Query psy15829
Match_columns 193
No_of_seqs 134 out of 1146
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 22:23:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4389|consensus 100.0 1.1E-34 2.3E-39 223.5 16.4 184 1-191 250-440 (601)
2 PF00135 COesterase: Carboxyle 99.9 3.8E-25 8.1E-30 181.2 10.6 180 1-191 240-425 (535)
3 cd00312 Esterase_lipase Estera 99.9 1.7E-24 3.6E-29 176.0 14.3 180 1-192 208-391 (493)
4 COG2272 PnbA Carboxylesterase 99.8 1.4E-18 3E-23 136.0 12.5 164 1-191 212-376 (491)
5 KOG1516|consensus 98.8 4.3E-08 9.4E-13 81.1 11.5 180 1-191 227-429 (545)
6 PF08006 DUF1700: Protein of u 56.6 25 0.00055 24.8 4.3 28 131-158 2-29 (181)
7 PF00325 Crp: Bacterial regula 42.8 5.3 0.00011 19.6 -0.7 22 23-49 6-27 (32)
8 KOG2145|consensus 33.2 32 0.0007 26.6 1.9 97 7-113 15-133 (397)
9 PF13744 HTH_37: Helix-turn-he 27.6 39 0.00085 20.2 1.3 36 23-63 35-71 (80)
10 cd05141 Barstar_evA4336-like B 26.9 1.2E+02 0.0026 18.2 3.3 33 18-52 11-43 (81)
11 PF08097 Toxin_26: Conotoxin T 24.3 27 0.00059 12.2 0.1 7 179-185 1-7 (11)
12 COG4709 Predicted membrane pro 24.3 2E+02 0.0042 20.8 4.3 28 131-158 2-29 (195)
13 COG1654 BirA Biotin operon rep 24.1 31 0.00067 20.9 0.4 14 21-34 21-34 (79)
14 PF04963 Sigma54_CBD: Sigma-54 23.2 32 0.00069 24.7 0.3 29 19-52 119-147 (194)
15 PF15287 KRBA1: KRBA1 family r 23.2 38 0.00083 17.9 0.5 16 40-55 13-28 (43)
16 PF10005 DUF2248: Uncharacteri 21.4 3.4E+02 0.0074 21.6 5.6 51 138-191 204-254 (343)
17 PF14614 DUF4450: Domain of un 21.1 75 0.0016 23.3 1.9 35 79-115 151-188 (211)
No 1
>KOG4389|consensus
Probab=100.00 E-value=1.1e-34 Score=223.51 Aligned_cols=184 Identities=30% Similarity=0.532 Sum_probs=166.5
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCCCChHHHhhhhcCCChhHHHhhhhhccccccCcccccccCCCc
Q psy15829 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQWNSYTAILGFTSAPTIDGEL 80 (193)
Q Consensus 1 ~~SGs~~~~~~~~~~~~~~~~~~~~a~~~gc~~~~~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~~f~PvvDg~~ 80 (193)
+||||..+||++.++.+|++++.++|+.+||+.+ +..++++|||++|++.|....+.+......++|.||+||+|
T Consensus 250 lQSGS~~~pWA~~s~~~A~~~s~~La~lvgC~~~-----~~~~i~~ClR~~~a~~l~~~~wnv~~~~l~FpfvpvvDg~F 324 (601)
T KOG4389|consen 250 LQSGSLNNPWAIVSPGEARQRSTALANLVGCNKT-----NDTEIVACLRSVPAQLLSLNEWNVSPTPLSFPFVPVVDGDF 324 (601)
T ss_pred hhcCCCCCCccccChHHHHHHHHHHHHHhCCCCC-----ChHHHHHHHhcCCHHHHhhhhccccCCccccceeeeecccc
Confidence 6999999999999999999999999999999987 89999999999999999998888776777899999999999
Q ss_pred CCCChHHHHhhccCCCCccceeEeecCCCceeeeehhcccccccCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHhhh-c
Q psy15829 81 VPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHE-K 159 (193)
Q Consensus 81 lp~~p~~~~~~~~~~~~~vp~miG~~~~Eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~Y-~ 159 (193)
|+++|..++++| .|+++.+|+|+++|||.+|..+.+++.+.+.+...+++++|...++..++..++..++.++-.| +
T Consensus 325 l~~~~~~~L~~g--~fkd~~il~G~nkDEGtyfl~Y~lp~ff~~~n~~~itR~ef~e~~~~~f~~~~~~~r~a~~~~ytd 402 (601)
T KOG4389|consen 325 LSDDPFALLKEG--DFKDVQILVGVNKDEGTYFLVYGLPGFFDKHNASLITRDEFLEGVRVFFPGVSDLAREAIKFHYTD 402 (601)
T ss_pred ccCChHHHHhcC--CccceeEEEEeecccceeEEeecCcccccccccccCCHHHHHHHHHHhcccccHHHHHHHHHhcCc
Confidence 999999999999 9999999999999999999988887777766777899999999999999988888888888888 2
Q ss_pred -----CCChhhH-HHHHHHHhcccceecCHHHHHHHHh
Q psy15829 160 -----HTSFTSR-ELTFLILVNQIFKVKPESEQAAAII 191 (193)
Q Consensus 160 -----~~~~~~~-~~~~~~~~sD~~f~~p~~~~a~~~~ 191 (193)
...+.+. ++++.++++|++|+||+..+|++++
T Consensus 403 ~~~~~~~~p~~~y~~~~~~~vGDyfFtC~~~e~A~~~~ 440 (601)
T KOG4389|consen 403 WHVLDPGRPERLYREALGDVVGDYFFTCPVNEFADALA 440 (601)
T ss_pred hhhcCccchhhhHHHHHHHhhcceeeecCHHHHHHHHH
Confidence 2233333 6899999999999999999999886
No 2
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.92 E-value=3.8e-25 Score=181.22 Aligned_cols=180 Identities=22% Similarity=0.357 Sum_probs=131.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCCCChHHHhhhhcCCChhHHHhhhhhccccccCc-ccccccCCC
Q psy15829 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQWNSYTAILGF-TSAPTIDGE 79 (193)
Q Consensus 1 ~~SGs~~~~~~~~~~~~~~~~~~~~a~~~gc~~~~~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~-~f~PvvDg~ 79 (193)
+|||+++.+|.... ..+..++++++.+||... +..++++|||++|+++|+++........... +|+|||||+
T Consensus 240 ~~SGs~~~~~~~~~--~~~~~~~~la~~lgc~~~-----~~~~~l~cLR~~~~~~L~~a~~~~~~~~~~~~~f~PvvDg~ 312 (535)
T PF00135_consen 240 LQSGSALSPWATSE--NPEQQAQKLAKALGCDDS-----DSSDILECLRSLPAEELLAAQNKLWPESGFFPPFGPVVDGD 312 (535)
T ss_dssp EES--TTSTTSSBS--HHHHHHHHHHHHTTSTTS-----SHHHHHHHHHHS-HHHHHHHHHCCSTTSSSSSSSSBBEBSS
T ss_pred cccccccccccccc--ccchhhhhhhhhhccccc-----cccchhhhhhhhhccchhhhhhcccccccccccCCceeccc
Confidence 58999999988764 348899999999999987 7779999999999999999988543222223 489999999
Q ss_pred cCCCChHHHHhhccCCCCccceeEeecCCCceeeeehhcccccccCCCCCCCHHHHHHHHHHHhcCCCHH--HHHHHHhh
Q psy15829 80 LVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPES--EQAAAIIH 157 (193)
Q Consensus 80 ~lp~~p~~~~~~~~~~~~~vp~miG~~~~Eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~i~~~ 157 (193)
|||++|.+++++| .++++|+|+|+|++||.+|.......... .......+.+...+...+...... ..+.+.+.
T Consensus 313 ~lp~~p~~~~~~g--~~~~vP~liG~t~~Eg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~ 388 (535)
T PF00135_consen 313 FLPDSPSELLKSG--RFNKVPLLIGSTSDEGSLFAPPSFSNNSE--SFSEILNEDFEDLLPSLLPYYSSDSRIADAIKEF 388 (535)
T ss_dssp SSSS-HHHHHHTT--TSTTSEEEEEEETBTTHHHHGTGSTTTSH--STSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCcccccccc--ccceeeeecccccccchhhhccccccccc--cccccchhhHHHHHhhhhcccccccccchhhhcc
Confidence 9999999999999 89999999999999999987654211100 001111234666777777654444 48899999
Q ss_pred hcCC---ChhhHHHHHHHHhcccceecCHHHHHHHHh
Q psy15829 158 EKHT---SFTSRELTFLILVNQIFKVKPESEQAAAII 191 (193)
Q Consensus 158 Y~~~---~~~~~~~~~~~~~sD~~f~~p~~~~a~~~~ 191 (193)
|... .+......+.++++|+.|.||....++.++
T Consensus 389 Y~~~~~~~~~~~~~~~~~~~sD~~f~~p~~~~~~~~~ 425 (535)
T PF00135_consen 389 YPDDPDPNDSDSRDRLAQLLSDIFFTCPARRAANHLA 425 (535)
T ss_dssp HSSTTSTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccccccchhhhHHHhhccCcceeeecccccccccc
Confidence 9332 234445889999999999999666665544
No 3
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.92 E-value=1.7e-24 Score=176.02 Aligned_cols=180 Identities=19% Similarity=0.274 Sum_probs=137.4
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCCCChHHHhhhhcCCChhHHHhhhhhccc--cccCcccccccCC
Q psy15829 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQWNSYT--AILGFTSAPTIDG 78 (193)
Q Consensus 1 ~~SGs~~~~~~~~~~~~~~~~~~~~a~~~gc~~~~~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~--~~~~~~f~PvvDg 78 (193)
+|||++..+|... ..+...++++++.+||+.. +..++++|||++++++|+++...... ....+.|.|++||
T Consensus 208 ~~sg~~~~~~~~~--~~~~~~~~~~~~~lgc~~~-----~~~~~l~cLr~~~~~~l~~a~~~~~~~~~~~~~~f~PvvDg 280 (493)
T cd00312 208 SQSGSALSPWAIQ--ENARGRAKRLARLLGCNDT-----SSAELLDCLRSKSAEELLDATRKLLLFSYSPFLPFGPVVDG 280 (493)
T ss_pred hhcCCccCccccc--ccHHHHHHHHHHHcCCCCC-----CHHHHHHHHhcCCHHHHHHHHHhhccccccCccceeeecCC
Confidence 5899998777643 5677888999999999876 66788999999999999988765431 1123578999999
Q ss_pred CcCCCChHHHHhhccCCCCccceeEeecCCCceeeeehhcccccccCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHhhh
Q psy15829 79 ELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHE 158 (193)
Q Consensus 79 ~~lp~~p~~~~~~~~~~~~~vp~miG~~~~Eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~Y 158 (193)
.|||++|.+++++| .+++||+|+|+|.+||.+|........ .. ......+.+...+...+........+.+++.|
T Consensus 281 ~~lp~~p~~~~~~g--~~~~vPvLiG~t~dEg~~f~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y 355 (493)
T cd00312 281 DFIPDDPEELIKEG--KFAKVPLIIGVTKDEGGYFAAMLLNFD-AK--LIIETNDRWLELLPYLLFYADDALADKVLEKY 355 (493)
T ss_pred CCCCcCHHHHHhcC--CCCCCCEEEEEeccchhhhHHhhhccc-cc--cccchHHHHHHHHHHHhccchHHHHHHHHHHc
Confidence 99999999999999 899999999999999998865332110 00 01123456666666665544467889999999
Q ss_pred cC--CChhhHHHHHHHHhcccceecCHHHHHHHHhc
Q psy15829 159 KH--TSFTSRELTFLILVNQIFKVKPESEQAAAIIH 192 (193)
Q Consensus 159 ~~--~~~~~~~~~~~~~~sD~~f~~p~~~~a~~~~~ 192 (193)
.. ......+..+.++++|..|.||+..+++.+++
T Consensus 356 ~~~~~~~~~~~~~~~~l~sD~~f~~P~~~~a~~~~~ 391 (493)
T cd00312 356 PGDVDDSVESRKNLSDMLTDLLFKCPARYFLAQHRK 391 (493)
T ss_pred cCCCCCcHHHHHHHHHHhhcccchhHHHHHHHHHHh
Confidence 32 22345677899999999999999998887763
No 4
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.79 E-value=1.4e-18 Score=136.02 Aligned_cols=164 Identities=20% Similarity=0.216 Sum_probs=125.0
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCCCChHHHhhhhcCCChhHHHhhhhhcccc-ccCcccccccCCC
Q psy15829 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQWNSYTA-ILGFTSAPTIDGE 79 (193)
Q Consensus 1 ~~SGs~~~~~~~~~~~~~~~~~~~~a~~~gc~~~~~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~-~~~~~f~PvvDg~ 79 (193)
+|||... ...+.+.++..+..+++.+||.. +.++|||.+++++|+++...+... ...++++|++|+.
T Consensus 212 ~~Sg~~~---~~~s~~~A~~~a~~f~~~lG~~~---------~~~~~L~~~~~~~L~~~~~~~~~~~~~~~~~~p~~~d~ 279 (491)
T COG2272 212 ALSGAAS---RVTSREEAREKAAAFARALGIPE---------ATLDKLRALSAEDLVKARLPLIGRTFGAVPYGPVLGDS 279 (491)
T ss_pred HhCCCCC---ccCcHHHHHHHHHHHHHHhCCCH---------HHHHHHhcCCHHHHHhhhhhhccccCCCcCCCCccCcc
Confidence 4788876 34567899999999999999973 348999999999999987766432 2335689999999
Q ss_pred cCCCChHHHHhhccCCCCccceeEeecCCCceeeeehhcccccccCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHhhhc
Q psy15829 80 LVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEK 159 (193)
Q Consensus 80 ~lp~~p~~~~~~~~~~~~~vp~miG~~~~Eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~Y~ 159 (193)
++|..|.+.+++| +.+.||+|||+|.+||.+|+.... . +... ..+.+...+........+++...|+
T Consensus 280 ~lp~~P~e~~~~g--~~~~vpl~iGtn~dEg~~f~~~~~---------~-~~~~-~~~~~~~~l~g~~~~~~~~v~~~Y~ 346 (491)
T COG2272 280 LLPRDPLEAIAQG--RSHGVPLMIGTNHDEGSLFINFNP---------D-SPPG-LRDKVAARLPGKELINAERVPAAYP 346 (491)
T ss_pred cccCChhhhhhcc--cccCCcEEeeccCCcceEEeeccC---------c-Cchh-hHHHHHHHhccccccchhhhhhhcc
Confidence 9999999999999 889999999999999999986542 1 1111 2223333332222233788889994
Q ss_pred CCChhhHHHHHHHHhcccceecCHHHHHHHHh
Q psy15829 160 HTSFTSRELTFLILVNQIFKVKPESEQAAAII 191 (193)
Q Consensus 160 ~~~~~~~~~~~~~~~sD~~f~~p~~~~a~~~~ 191 (193)
... .....+..+++|..|.||+.++|+.++
T Consensus 347 ~~~--~~~~~~~~~~tD~~F~~p~~~~a~a~~ 376 (491)
T COG2272 347 GVS--AAAAAFGALVTDRLFKAPSIRLAQAQS 376 (491)
T ss_pred ccc--hhHHHHHHHhhcceecchHHHHHHhcc
Confidence 322 345678889999999999999999886
No 5
>KOG1516|consensus
Probab=98.84 E-value=4.3e-08 Score=81.15 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=119.1
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCCCChHHHhhhhcCCChhHHHhhhhhcccc----ccCccccccc
Q psy15829 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQWNSYTA----ILGFTSAPTI 76 (193)
Q Consensus 1 ~~SGs~~~~~~~~~~~~~~~~~~~~a~~~gc~~~~~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~----~~~~~f~Pvv 76 (193)
+|||+++++|.+...+.....+++++..+||... +..++++|++.++.++++......... .....|.|++
T Consensus 227 ~~SG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (545)
T KOG1516|consen 227 SMSGNALSPWAIAPIEYARFLAEELACKVGLPGE-----DSSSLVQCLQAAPAEELLQALLKLELFDFVPSDLFAFPPVI 301 (545)
T ss_pred hhccccccchhcccchhhHHHHHHHhhhcCCCCC-----cHHHHHHHHhcCCHHHHHhhhccccccccCcccccccCCcc
Confidence 4899999999986556677788888888888765 678899999999999998865543321 1224678988
Q ss_pred CC-----CcCCCChHHHHhhccCCCCccc--eeEeecCCCceeeeehhcccccccCCCCCCCHHHHHHHHH---HHhcC-
Q psy15829 77 DG-----ELVPKHPLAMIEDMSKDDNLTE--IIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVN---QIFKV- 145 (193)
Q Consensus 77 Dg-----~~lp~~p~~~~~~~~~~~~~vp--~miG~~~~Eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~- 145 (193)
|+ .+++..|....... ....++ +++|.+..|+.+....... ...... ...+.++..+. .....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~ 375 (545)
T KOG1516|consen 302 DGSVARESFLPPVPIIVLMEA--DSNAPPLIILVGGNSNEGLLLLNFLKH--LGPELY--TLSKAVEELLPTLLIGAAKA 375 (545)
T ss_pred CcccccCcccCCCHHHHHhhh--cccCCCceeecccccccchhhhhhhhh--cccchh--hhhhhHhhhcchhhhhcccc
Confidence 86 57888888888887 666666 9999999999766432110 000000 01223333332 11111
Q ss_pred ---CCHHHHHHHHhhh--cCCChh---hHHHHHHHHhcccceecCHHHHHHHHh
Q psy15829 146 ---KPESEQAAAIIHE--KHTSFT---SRELTFLILVNQIFKVKPESEQAAAII 191 (193)
Q Consensus 146 ---~~~~~~~~i~~~Y--~~~~~~---~~~~~~~~~~sD~~f~~p~~~~a~~~~ 191 (193)
............| ...... ........+.+|..|..|+.+.++...
T Consensus 376 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 429 (545)
T KOG1516|consen 376 TDSASLENISVLKAYYLKDSAGSKEFGYSLTSLSDIVSDLLFNFGTHRLLRLRR 429 (545)
T ss_pred chhhHHHHHHHHHHHhccccCchhhhhhhHHHHHHHhhhhheeccHHHHHHHHH
Confidence 1233445555666 222222 256788999999999999999988765
No 6
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=56.58 E-value=25 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHhhh
Q psy15829 131 PREKFLILVNQIFKVKPESEQAAAIIHE 158 (193)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~~~i~~~Y 158 (193)
++++|.+.++..+...+++..+++.++|
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y 29 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYY 29 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455666666666656666666666666
No 7
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=42.79 E-value=5.3 Score=19.61 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=13.6
Q ss_pred HHHHHHcCCCCCCCCCCChHHHhhhhc
Q psy15829 23 RKLLDDVGCNGTTNLEDNPERVMSCLG 49 (193)
Q Consensus 23 ~~~a~~~gc~~~~~~~~~~~~~~~cLr 49 (193)
+++|..+||+.. ....++..|+
T Consensus 6 ~diA~~lG~t~E-----TVSR~l~~l~ 27 (32)
T PF00325_consen 6 QDIADYLGLTRE-----TVSRILKKLE 27 (32)
T ss_dssp HHHHHHHTS-HH-----HHHHHHHHHH
T ss_pred HHHHHHhCCcHH-----HHHHHHHHHH
Confidence 578899999765 4445554443
No 8
>KOG2145|consensus
Probab=33.24 E-value=32 Score=26.56 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=54.4
Q ss_pred cCCcccccHHHHHHHHHHHHHHcCCCCCCCCCCChHHHhhh---hcCCChhHHHhhhhhc------------ccc---cc
Q psy15829 7 NAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSC---LGAVDSKTISSMQWNS------------YTA---IL 68 (193)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~a~~~gc~~~~~~~~~~~~~~~c---Lr~~~~~~l~~~~~~~------------~~~---~~ 68 (193)
..||.........--++++...+||..- .+++++. |-..++.-+++-..-. ..+ +.
T Consensus 15 vtPW~V~~~~~~~IDYdklI~~FG~~k~------deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kpFyL 88 (397)
T KOG2145|consen 15 VTPWDVETSSADGIDYDKLIVQFGCSKI------DEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKPFYL 88 (397)
T ss_pred cCcceeecccCCCccHHHHHHHhCcccC------CHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCceEE
Confidence 3567665433334458899999999863 2344444 4444554444321100 001 01
Q ss_pred CcccccccC----CCcCCCChHHHHhhccCCCCccceeEeecCCCceee
Q psy15829 69 GFTSAPTID----GELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYF 113 (193)
Q Consensus 69 ~~~f~PvvD----g~~lp~~p~~~~~~~~~~~~~vp~miG~~~~Eg~~~ 113 (193)
+-.=+|..+ |.++|--...-++.- -+||+.|-.|.+|-.+|
T Consensus 89 YTGRGpSS~smHlGHliPFiftKwlQe~----F~vpLVIqlTDDEKflw 133 (397)
T KOG2145|consen 89 YTGRGPSSESMHLGHLIPFIFTKWLQDV----FDVPLVIQLTDDEKFLW 133 (397)
T ss_pred EeCCCCCccccccccchhHHHHHHHHHH----hCCceEEEecccHHHHH
Confidence 111267666 566665444444443 57999999999997655
No 9
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=27.55 E-value=39 Score=20.22 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=21.9
Q ss_pred HHHHHHcCCCCCCCCCCChHHHhh-hhcCCChhHHHhhhhhc
Q psy15829 23 RKLLDDVGCNGTTNLEDNPERVMS-CLGAVDSKTISSMQWNS 63 (193)
Q Consensus 23 ~~~a~~~gc~~~~~~~~~~~~~~~-cLr~~~~~~l~~~~~~~ 63 (193)
..+|+.+|++.. ..++++. -.++.+.+.|......+
T Consensus 35 ~e~A~~lgisq~-----~vS~l~~g~~~~~sl~~L~~~l~aL 71 (80)
T PF13744_consen 35 AELAERLGISQP-----RVSRLENGKIDDFSLDTLLRYLEAL 71 (80)
T ss_dssp HHHHHHHTS-HH-----HHHHHHTT-GCC--HHHHHHHHHHT
T ss_pred HHHHHHHCCChh-----HHHHHHcCcccCCCHHHHHHHHHHc
Confidence 467888888865 5556554 57778888887765543
No 10
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=26.89 E-value=1.2e+02 Score=18.20 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCChHHHhhhhcCCC
Q psy15829 18 AVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVD 52 (193)
Q Consensus 18 ~~~~~~~~a~~~gc~~~~~~~~~~~~~~~cLr~~~ 52 (193)
-....+.+++.++++.- -..+.+.+.+||+..+
T Consensus 11 ~~~~~~~l~~~l~fP~y--fG~NlDAl~DcL~d~~ 43 (81)
T cd05141 11 KAALLDALAAALDFPSW--FGHNWDALADCLTDLS 43 (81)
T ss_pred HHHHHHHHHHHcCCCcc--ccCCHHHHHHHHcCcc
Confidence 34678889999999842 1127889999999875
No 11
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=24.33 E-value=27 Score=12.25 Aligned_cols=7 Identities=14% Similarity=-0.083 Sum_probs=4.2
Q ss_pred eecCHHH
Q psy15829 179 KVKPESE 185 (193)
Q Consensus 179 f~~p~~~ 185 (193)
|-||+.+
T Consensus 1 fccpvir 7 (11)
T PF08097_consen 1 FCCPVIR 7 (11)
T ss_pred CCcchhh
Confidence 4577654
No 12
>COG4709 Predicted membrane protein [Function unknown]
Probab=24.32 E-value=2e+02 Score=20.79 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHhhh
Q psy15829 131 PREKFLILVNQIFKVKPESEQAAAIIHE 158 (193)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~~~i~~~Y 158 (193)
++.+|.+.++.++...+++...++...|
T Consensus 2 tk~efL~eL~~yL~~Lp~~~r~e~m~dy 29 (195)
T COG4709 2 TKTEFLNELEQYLEGLPREERREIMYDY 29 (195)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455556666666555555555555544
No 13
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=24.10 E-value=31 Score=20.90 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=9.8
Q ss_pred HHHHHHHHcCCCCC
Q psy15829 21 IARKLLDDVGCNGT 34 (193)
Q Consensus 21 ~~~~~a~~~gc~~~ 34 (193)
..+++++.+||+.+
T Consensus 21 SGe~La~~LgiSRt 34 (79)
T COG1654 21 SGEKLAEELGISRT 34 (79)
T ss_pred cHHHHHHHHCccHH
Confidence 35677888888754
No 14
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=23.22 E-value=32 Score=24.71 Aligned_cols=29 Identities=7% Similarity=0.205 Sum_probs=0.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCChHHHhhhhcCCC
Q psy15829 19 VEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVD 52 (193)
Q Consensus 19 ~~~~~~~a~~~gc~~~~~~~~~~~~~~~cLr~~~ 52 (193)
....+++++.+||+.. ...+.++.+|+.+
T Consensus 119 ~~~~~~ia~~l~~s~~-----~v~~~~~~Ir~L~ 147 (194)
T PF04963_consen 119 NKDYKKIAKKLGISEE-----EVQEAIELIRTLN 147 (194)
T ss_dssp H---------------------------------
T ss_pred Hhhhcccccccccccc-----ccccccccccccc
Confidence 3455677888888765 4455556666544
No 15
>PF15287 KRBA1: KRBA1 family repeat
Probab=23.20 E-value=38 Score=17.87 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=11.8
Q ss_pred ChHHHhhhhcCCChhH
Q psy15829 40 NPERVMSCLGAVDSKT 55 (193)
Q Consensus 40 ~~~~~~~cLr~~~~~~ 55 (193)
.-.-+++|||.++...
T Consensus 13 PLqgL~ncLkeIp~~r 28 (43)
T PF15287_consen 13 PLQGLENCLKEIPVPR 28 (43)
T ss_pred cHHHHHHHhhccccCC
Confidence 3467889999987643
No 16
>PF10005 DUF2248: Uncharacterized protein conserved in bacteria (DUF2248); InterPro: IPR011201 This is a family of uncharacterised bacterial proteins.
Probab=21.39 E-value=3.4e+02 Score=21.63 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=28.9
Q ss_pred HHHHHhcCCCHHHHHHHHhhhcCCChhhHHHHHHHHhcccceecCHHHHHHHHh
Q psy15829 138 LVNQIFKVKPESEQAAAIIHEKHTSFTSRELTFLILVNQIFKVKPESEQAAAII 191 (193)
Q Consensus 138 ~l~~~~~~~~~~~~~~i~~~Y~~~~~~~~~~~~~~~~sD~~f~~p~~~~a~~~~ 191 (193)
..+.+|++...+-.+++..+|..+++..|.+.++ |-|.-..|---+|+-.|
T Consensus 204 ~fR~lFGDer~DY~~AL~~hY~~Gpp~~W~~~~I---SaYAt~HPwEDwAETwA 254 (343)
T PF10005_consen 204 AFRALFGDERADYGAALQRHYANGPPADWQENFI---SAYATMHPWEDWAETWA 254 (343)
T ss_pred HHHHHhCCChhhHHHHHHHhhccCCchhhhhhhh---HHHhhcCchHHHHHHHH
Confidence 3345566666666777888885555555554433 33344555555555444
No 17
>PF14614 DUF4450: Domain of unknown function (DUF4450); PDB: 4E0E_D.
Probab=21.14 E-value=75 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=21.8
Q ss_pred CcCCCChHHHHhhccCCCCccceeEeecC---CCceeeee
Q psy15829 79 ELVPKHPLAMIEDMSKDDNLTEIIIGSNQ---DEGTYFLL 115 (193)
Q Consensus 79 ~~lp~~p~~~~~~~~~~~~~vp~miG~~~---~Eg~~~~~ 115 (193)
.-..++|.+++.+| +....|+|.|.+. .|-.+|..
T Consensus 151 a~~~~~pl~L~~Sg--k~t~~Pvl~g~~~~~~~~~~Y~~i 188 (211)
T PF14614_consen 151 AHKQNDPLELWNSG--KKTDAPVLAGKYPLKTEEPVYFCI 188 (211)
T ss_dssp GGG-SSHHHHHTT---S--SSEEEEEEEE--TTEEEEEEE
T ss_pred hhhhcCHHHHHhcC--CccCCCEEEEEeeCCCCCcEEEEE
Confidence 34456699999998 7678999999653 34444543
Done!