RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15829
(193 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 110 bits (277), Expect = 1e-28
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+ SG+ +PW+ + A++L +GC G + + ++ CL ++ + Q
Sbjct: 214 LMSGSALSPWAIT--SNPRQRAKRLAKLLGCPGEDSSAE----LLECLRKKSAEELLDAQ 267
Query: 61 WNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFID 120
+ F P +DG+ +PK P +++ S N ++IG DEG FL Y D
Sbjct: 268 LLLLEEVGFFPFGPVVDGDFLPKDPEELLK--SGWFNKVPLLIGVTSDEGLLFLAYVLPD 325
Query: 121 YFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHT 161
E S L E FL L+ ++ PE + A + E++T
Sbjct: 326 PTEL---SELLNEDFLELLPELLPGAPELSRIADALKEEYT 363
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 78.5 bits (194), Expect = 3e-17
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 1 MQSGTLNAPW--SYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISS 58
QSG+ +PW RA +AR L GCN T + ++ CL + ++ +
Sbjct: 208 SQSGSALSPWAIQENARGRAKRLARLL----GCNDT-----SSAELLDCLRSKSAEELLD 258
Query: 59 MQWN----SYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFL 114
SY+ L F P +DG+ +P P +I++ +IIG +DEG YF
Sbjct: 259 ATRKLLLFSYSPFLPFG--PVVDGDFIPDDPEELIKEGKFAK--VPLIIGVTKDEGGYFA 314
Query: 115 LYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAI 155
+ +++L L+ + ++ +
Sbjct: 315 AMLLNFDAKL---IIETNDRWLELLPYLLFYADDALADKVL 352
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 38.2 bits (89), Expect = 0.002
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 21/122 (17%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDS----KTI 56
SG + + E A E A +G PE + L A+ + K
Sbjct: 212 ALSGAASRV---TSREEAREKAAAFARALGI---------PEATLDKLRALSAEDLVKAR 259
Query: 57 SSMQWNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLY 116
+ ++ A+ P + L+P+ PL I + ++IG+N DEG+ F+ +
Sbjct: 260 LPLIGRTFGAVPYG---PVLGDSLLPRDPLEAIA--QGRSHGVPLMIGTNHDEGSLFINF 314
Query: 117 DF 118
+
Sbjct: 315 NP 316
>gnl|CDD|180968 PRK07413, PRK07413, hypothetical protein; Validated.
Length = 382
Score = 28.9 bits (65), Expect = 1.8
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 42/111 (37%)
Query: 9 PWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDS---KTISSMQWNSYT 65
P Y+ AERA EIAR A+ S KTI + N
Sbjct: 284 PIDYVEAERAWEIAR-------------------------AAIASGLYKTIILDELN--- 315
Query: 66 AILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIII-GSNQDEGTYFLL 115
PT+D EL+P P+ ++ + + TE+II G +++ YF L
Sbjct: 316 --------PTVDLELLPVEPI--VQTLLRKPRDTEVIITGRCKNQPAYFDL 356
>gnl|CDD|215408 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds.
Length = 978
Score = 28.3 bits (63), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 11/31 (35%)
Query: 4 GTLNAP-----------WSYMTAERAVEIAR 23
GT+ P WSY +A+R EIAR
Sbjct: 178 GTVFMPPKWALGYQQCRWSYESAKRVAEIAR 208
>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC)
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
The GRAMDC proteins are membrane proteins. Nothing is
known about its function. Members include: GRAMDC1A,
GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and
GRAMDC-like proteins. All of the members, except for
GRAMDC4 are included in this hierarchy. Each contains a
single PH-GRAM domain at their N-terminus. The GRAM
domain is found in glucosyltransferases, myotubularins
and other putative membrane-associated proteins. The
GRAM domain is part of a larger motif with a pleckstrin
homology (PH) domain fold.
Length = 111
Score = 26.7 bits (60), Expect = 4.2
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 157 HEKH--TSFTSRELTFLILVNQIFKVKPESE 185
EK+ SF SR+ TF ++ E
Sbjct: 79 TEKYFFASFLSRDSTFDLITRVWSNALLEKR 109
>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein)
[Inorganic ion transport and metabolism].
Length = 587
Score = 27.8 bits (62), Expect = 4.7
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 38 EDNPERV---MSCLGAVDSKTISSMQWNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSK 94
E++PE V + LG + ++ + + S PK L + +
Sbjct: 266 ENDPELVDEFLELLGLDPEEPVTV-DGETLPLVEALKSHFEFTSA--PKSLLENLAHFAG 322
Query: 95 DDNLTEII-IGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFL 136
+ L ++ D Y ID P+ LP E+ +
Sbjct: 323 QEELRRLLEQLDIADLQDYAKRRTLIDVLRDFPPAKLPAEELI 365
>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 92
Score = 26.2 bits (57), Expect = 5.5
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 112 YFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHTSFTSRELTF 170
+F+L+D + + K + + K LI ++ +V+ S E T R
Sbjct: 20 WFVLFDDVLLYYKSKKDSSKKPKGLIPLSDGLEVELVSSSGKPNCFELVTPDRGRTYYL 78
>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular
trafficking and secretion].
Length = 1263
Score = 26.8 bits (59), Expect = 8.6
Identities = 16/70 (22%), Positives = 26/70 (37%)
Query: 98 LTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIH 157
EI+ ++ D F + F + L +E LVN+ + E +
Sbjct: 720 FHEIVSSTSIDIQKSCSNLTFSELFTPNKTKKLIKEILKSLVNRNIQSGGSIEYLIKTLS 779
Query: 158 EKHTSFTSRE 167
E+ SF S E
Sbjct: 780 ERCGSFCSAE 789
>gnl|CDD|165556 PHA03299, PHA03299, envelope glycoprotein L; Provisional.
Length = 195
Score = 26.4 bits (58), Expect = 8.7
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 48 LGAVDSKTISSMQWNSYTAILGFTSAPTIDG----ELVPKHPL--AMIEDMSKDDNLTEI 101
L + + + W+ GF P + + +P L A ++S DD T I
Sbjct: 14 LRVFFASAEAVLNWSDRDLTYGFVRVPNVSSIMHLDCIPNSKLSSARYAELSSDDVPTGI 73
Query: 102 IIGSNQDEGTYFLLYD 117
I +N + L Y+
Sbjct: 74 FIKTNCSLPEFILWYE 89
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 26.6 bits (59), Expect = 8.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 122 FEKDGPSTLPREKFLILVNQIF 143
F + GPS LP E L L++
Sbjct: 68 FAQRGPSLLPPEPLLELLSNYL 89
>gnl|CDD|220331 pfam09660, DUF2397, Protein of unknown function (DUF2397).
Proteins in this entry are encoded within a conserved
gene four-gene neighborhood found sporadically in a
phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Betaproteobacteria).
Length = 478
Score = 26.5 bits (59), Expect = 9.9
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 151 QAAAIIHEKHTSFTSRELTFLILVNQIFKVKPESEQA 187
+ AA + E+ + +SR L + F P E+A
Sbjct: 285 RNAARLTERRSGGSSRRADLRHLA-RWFAAAPSIEEA 320
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,867,831
Number of extensions: 917168
Number of successful extensions: 891
Number of sequences better than 10.0: 1
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 16
Length of query: 193
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 101
Effective length of database: 6,857,034
Effective search space: 692560434
Effective search space used: 692560434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)