RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15829
(193 letters)
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 143 bits (363), Expect = 1e-40
Identities = 82/157 (52%), Positives = 115/157 (73%), Gaps = 3/157 (1%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
MQSGT+NAPWS+MT+E+AVEI + L++D CN + L+ NP VMSC+ +VD+KTIS Q
Sbjct: 262 MQSGTMNAPWSHMTSEKAVEIGKALINDCNCN-ASMLKTNPAHVMSCMRSVDAKTISVQQ 320
Query: 61 WNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFID 120
WNSY+ IL F SAPTIDG +P P+ +++ + D +I++G+ +DEGTYFLLYDFID
Sbjct: 321 WNSYSGILSFPSAPTIDGAFLPADPMTLMK--TADLKDYDILMGNVRDEGTYFLLYDFID 378
Query: 121 YFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIH 157
YF+KD + LPR+K+L ++N IF ++E+ A I
Sbjct: 379 YFDKDDATALPRDKYLEIMNNIFGKATQAEREAIIFQ 415
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 127 bits (321), Expect = 8e-35
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+QSGT N PW+ ++A A A L VGC N +++CL ++ + +
Sbjct: 227 LQSGTPNGPWATVSAGEARRRATLLARLVGCP-PGGAGGNDTELIACLRTRPAQDLVDHE 285
Query: 61 WN--SYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDF 118
W+ +I F+ P +DG+ + P A+I + D ++++G +DEG+YFL+Y
Sbjct: 286 WHVLPQESIFRFSFVPVVDGDFLSDTPEALIN--TGDFQDLQVLVGVVKDEGSYFLVYG- 342
Query: 119 IDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHE 158
+ F KD S + R +FL V + A A++
Sbjct: 343 VPGFSKDNESLISRAQFLAGVRIGVPQASD-LAAEAVVLH 381
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 126 bits (318), Expect = 2e-34
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+QSG+ N PW+ ++ A +L ++ CN ++ E ++ CL + + ++
Sbjct: 224 LQSGSPNCPWASVSVAEGRRRAVELGRNLNCNL-----NSDEELIHCLREKKPQELIDVE 278
Query: 61 WN--SYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDF 118
WN + +I F+ P IDGE P +M+ S + T+I++G N+DEG++FLLY
Sbjct: 279 WNVLPFDSIFRFSFVPVIDGEFFPTSLESMLN--SGNFKKTQILLGVNKDEGSFFLLYGA 336
Query: 119 IDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIH 157
F KD S + RE F+ V + A +
Sbjct: 337 -PGFSKDSESKISREDFMSGVKLSVPHANDLGLDAVTLQ 374
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 121 bits (306), Expect = 8e-33
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 10/180 (5%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+QSG+ NAPW+ + A L GC+ +N ++ CL D + I +
Sbjct: 222 LQSGSFNAPWAVTSLYEARNRTLNLAKLTGCSR-----ENETEIIKCLRNKDPQEILLNE 276
Query: 61 WN--SYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDF 118
Y L PT+DG+ + P ++E T+I++G N+DEGT FL+Y
Sbjct: 277 AFVVPYGTPLSVNFGPTVDGDFLTDMPDILLE--LGQFKKTQILVGVNKDEGTAFLVYGA 334
Query: 119 IDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHTSFTSRELTFLILVNQIF 178
F KD S + R++F + F E + + + H R + + +
Sbjct: 335 -PGFSKDNNSIITRKEFQEGLKIFFPGVSEFGKESILFHYTDWVDDQRPENYREALGDVV 393
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 108 bits (273), Expect = 4e-28
Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 19/172 (11%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
QSG PW+ + + A+++ + VGC D+ ++ CL D + ++
Sbjct: 218 SQSGVGLCPWAIQ--QDPLFWAKRIAEKVGCPV-----DDTSKMAGCLKITDPRALTLAY 270
Query: 61 -----WNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLL 115
Y + + P IDG+ +P P+ + + + + I G+N +G F+
Sbjct: 271 KLPLGSTEYPKLHYLSFVPVIDGDFIPDDPVNLYANAAD----VDYIAGTNDMDGHLFVG 326
Query: 116 YDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHTSFTSRE 167
D T E F LV+ + K A A +
Sbjct: 327 MDVPAINSNKQDVT--EEDFYKLVSGLTVTKGL-RGAQATYEVYTEPWAQDS 375
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 106 bits (265), Expect = 4e-27
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
QSGT + W+ + + + AR L VGCN + ++ CL K +
Sbjct: 244 AQSGTALSSWA--VSFQPAKYARILATKVGCNV-----SDTVELVECLQKKPYKELVDQD 296
Query: 61 WNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFID 120
+ F P IDG+++P P ++E + +I++G NQ EG F+
Sbjct: 297 VQPARYHIAF--GPVIDGDVIPDDPQILME--QGEFLNYDIMLGVNQGEGLKFVENIV-- 350
Query: 121 YFEKDGPSTLPREKFL----ILVNQIFKVKPESEQAAAIIHEKHTSFTSRE 167
D + F V+ ++ + I +T + R
Sbjct: 351 ----DSDDGVSASDFDFAVSNFVDNLYGYPEGKDVLRETIKFMYTDWADRH 397
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 99.4 bits (248), Expect = 9e-25
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 23/171 (13%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+ SGT ++ + A I + + ++G T +PE + L + ++ ++
Sbjct: 228 LMSGTSSSAFFTTNPVFAQYINKLFVTNIGITAT-----DPEEIHQKLIEMPAEKLNEAN 282
Query: 61 WNSYTAILGFTSAPTIDGEL------VPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFL 114
T P ++ + + P +I +IIG E F
Sbjct: 283 RFLLEQFGLTTFFPVVESPINGVTTILDGDPEQLIA--KGRGKHIPLIIGFTDAECEIFR 340
Query: 115 LY----DFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHT 161
D + +++ +P + +HEK+
Sbjct: 341 RQFEQIDIVSKIKENPGILVPLSVLFSS------APDTVAEITKAMHEKYF 385
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 96.7 bits (241), Expect = 8e-24
Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 20/168 (11%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+SG + +A ++ GC ++ CL + +
Sbjct: 227 SESGVALTSVLVKKGD-VKPLAEQIAITAGCK-----TTTSAVMVHCLRQKTEEELLETT 280
Query: 61 WNSYTAILGFTS---------APTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGT 111
L IDG L+ K P + ++ + ++G N+ E
Sbjct: 281 LKMKFLSLDLQGDPRESQPLLGTVIDGMLLLKTPEELQA--ERNFHTVPYMVGINKQEFG 338
Query: 112 YFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEK 159
+ + + L ++ + L+ + + + +++ EK
Sbjct: 339 WLIPMLMSYPLSEGQ---LDQKTAMSLLWKSYPLVCIAKELIPEATEK 383
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 89.7 bits (223), Expect = 2e-21
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 23/139 (16%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTI---- 56
++S + E + ++D GC+ + + CL D TI
Sbjct: 220 VESSFWPTQRTVSEMEFQ---FERFVNDTGCSSARD-------SLECLREQDIATIQKGN 269
Query: 57 --SSMQWNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFL 114
S S + + + P DG LVP + + + +++G + DEG+ F
Sbjct: 270 TGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFD--AGNFIKVPVLVGDDTDEGSNFA 327
Query: 115 LY-----DFIDYFEKDGPS 128
D +F+ + P+
Sbjct: 328 YNASSSADVSRFFKNNYPN 346
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 88.9 bits (221), Expect = 4e-21
Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 24/178 (13%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+QSG+ + E A+ + ++LD G L ++ ++ +
Sbjct: 218 LQSGS--GSLLLRSPETAMAMTERILDKAGIRPGD---------RERLLSIPAEELLRAA 266
Query: 61 WNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFID 120
+ G P +DG ++ +HP+ + + I+IG +DE F L D
Sbjct: 267 LSLGP---GVMYGPVVDGRVLRRHPIEALR--YGAASGIPILIGVTKDEYNLFTLTD--- 318
Query: 121 YFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHTSFTSRELTFLILVNQIF 178
+ L ++ L +N+ PE E S + + I+ ++F
Sbjct: 319 ----PSWTKLGEKELLDRINREVGPVPE-EAIRYYKETAEPSAPTWQTWLRIMTYRVF 371
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 89.0 bits (221), Expect = 4e-21
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 21/141 (14%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+QSG P+ ++ + GC+ + + D + CL + S + Q
Sbjct: 247 LQSGGP-LPYHDSSSVGPDISYNRFAQYAGCDTSASAND----TLECLRSKSSSVLHDAQ 301
Query: 61 WNSY------TAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFL 114
+ P DG ++P + S I G+ +DEGT F
Sbjct: 302 NSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYELFR--SGRYAKVPYISGNQEDEGTAFA 359
Query: 115 LY--------DFIDYFEKDGP 127
+ +
Sbjct: 360 PVALNATTTPHVKKWLQYIFY 380
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 88.7 bits (220), Expect = 5e-21
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 14/129 (10%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
MQSG + P + EI + GC ++ ++CL + S T+
Sbjct: 239 MQSGAM-VPSDPVDGTYGNEIYDLFVSSAGCGSASD-------KLACLRSASSDTLLDAT 290
Query: 61 WNSYTAI----LGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLY 116
N+ + L + P DG+ + ++ +IIG DEGT F L
Sbjct: 291 NNTPGFLAYSSLRLSYLPRPDGKNITDDMYKLVR--DGKYASVPVIIGDQNDEGTIFGLS 348
Query: 117 DFIDYFEKD 125
Sbjct: 349 SLNVTTNAQ 357
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 88.5 bits (220), Expect = 5e-21
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTI---- 56
M+SG E+A A L +G N + + L V ++ +
Sbjct: 213 MESGASRTMT----KEQAASTAAAFLQVLGINESQ---------LDRLHTVAAEDLLKAA 259
Query: 57 SSMQWNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLY 116
++ I P +D + +P+ P I + ++IG+ +DEG F
Sbjct: 260 DQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIA--EGAASGIPLLIGTTRDEGYLFFTP 317
Query: 117 DFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAA 154
D + ++ + L L + + P S ++
Sbjct: 318 DSDVHSQETLDAALEYLLGKPLAEKAADLYPRSLESQI 355
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 4e-04
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 47/163 (28%)
Query: 51 VDSKTISSMQWNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSK----DDNLTEIIIGSN 106
+D +T Q+ Y IL K ++DM K + + II+ +
Sbjct: 7 MDFET-GEHQY-QYKDIL-SVFEDAFVDNFDCKD----VQDMPKSILSKEEIDHIIMSKD 59
Query: 107 QDEGTYFLL-----------YDFI------DY--------FEKDGPSTLPREKFLILVNQ 141
GT L F+ +Y E+ PS + ++ ++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDR 118
Query: 142 IFKVKPESEQAAAIIHEKHTSFTSRELTFLILVNQIFKVKPES 184
++ + K+ SR +L L + +++P
Sbjct: 119 LYNDNQ--------VFAKY--NVSRLQPYLKLRQALLELRPAK 151
Score = 32.9 bits (74), Expect = 0.062
Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 52/201 (25%)
Query: 3 SGTLNAPWSYMTAERAVEIA-----RKLLDDVGCNGTTNLED---NPERVMSCLGAVDSK 54
+ L+ W + + + L++ T ++ + + A+
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 55 TISSMQWNSYTAILGF----TSAPTIDG---ELVPKHPLAMIEDMSKDDNLTEIIIGSNQ 107
+ + Y F P +D + H L IE + +
Sbjct: 449 IV-----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMV------ 496
Query: 108 DEGTYFLLYDFIDY-FEKDGPSTLPREKFLILVNQ-------IFKVKPESEQ-------- 151
FL + F++ D + L + Q I P+ E+
Sbjct: 497 -----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 152 ----AAAIIHEKHTSFTSREL 168
+I K+T L
Sbjct: 552 LPKIEENLICSKYTDLLRIAL 572
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport
protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A
1sn0_A 1sn5_A*
Length = 119
Score = 30.6 bits (69), Expect = 0.13
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 95 DDNLTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQ 151
+ +I G Y + +D Y+ G F + +F PE
Sbjct: 44 TGEIHNLITEQQFPAGVYRVEFDTKAYWTNQG-----STPFHEVAEVVFDAHPEGHG 95
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution,
URIC acid degradation, T hormones, peroxisome, purine
metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A
2h6u_A 2h1x_A
Length = 138
Score = 30.2 bits (68), Expect = 0.22
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 76 IDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKF 135
+D + L + D +I N G Y + ++ Y++ G F
Sbjct: 51 LDPVSSAWNILTTGI-TNDDGRCPGLITKENFIAGVYKMRFETGKYWDALG-----ETCF 104
Query: 136 LILVNQIFKVKPESE 150
V +F + S+
Sbjct: 105 YPYVEIVFTITNTSQ 119
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone,
fimbrium, immunoglobulin domain, periplasm, plasmid,
cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B
3f65_A 3f6i_A 3f6l_A
Length = 224
Score = 30.2 bits (67), Expect = 0.36
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 105 SNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHTSFT 164
+N D+ F ++D + ++ FKVKP +Q II
Sbjct: 23 TNNDKERTFGGQAWVDNIVEKDTRP-----TFVVTPSFFKVKPNGQQTLRIIMASDHLPK 77
Query: 165 SRELTFLILVNQI 177
+E + + + I
Sbjct: 78 DKESVYWLNLQDI 90
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY
amyloidogenesis, transport protein; HET: T44; 1.10A
{Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A
1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A*
3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A*
1tt6_A* 1tta_A 1tyr_A* ...
Length = 115
Score = 29.0 bits (65), Expect = 0.42
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 5/57 (8%)
Query: 95 DDNLTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQ 151
L + EG Y + D Y++ G F +F +
Sbjct: 43 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALG-----ISPFHEHAEVVFTANDSGPR 94
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne
transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP:
b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A
1tfp_A
Length = 127
Score = 28.4 bits (63), Expect = 0.70
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 5/57 (8%)
Query: 95 DDNLTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQ 151
L + EG Y + D Y++ G F +F +
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALG-----ISPFHEHAEVVFTANDSGPR 103
>2oya_A Macrophage receptor marco; extracellular matrix, scavenger
receptor cysteine-rich (SRCR macrophage receptor,
ligand binding, basic cluster; 1.77A {Mus musculus}
PDB: 2oy3_A
Length = 102
Score = 27.1 bits (61), Expect = 1.8
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 25 LLDDVGCNGT-TNLED 39
LD+V C GT +L D
Sbjct: 65 WLDNVNCRGTENSLWD 80
>1by2_A MAC-2 binding protein; extracellular module, scavenger receptor,
tumour-associated extracellular matrix, glycosylated
protein; HET: NAG; 2.00A {Homo sapiens} SCOP: d.170.1.1
Length = 119
Score = 26.8 bits (60), Expect = 2.2
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 25 LLDDVGCNGT-TNLED 39
+LD+V C GT +L D
Sbjct: 73 MLDEVQCTGTEASLAD 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 3.1
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 54/138 (39%)
Query: 44 VMSCLGAVDSKTISSMQW-NSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEII 102
L D+ + + + +Y P K A+ + + +++
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRP-----FDKKSNSALFR--AVGEGNAQLV 157
Query: 103 I-----GSNQDEGTYF--L--LY--------DFID------------------YFEK--- 124
G+ D YF L LY D I F +
Sbjct: 158 AIFGGQGNTDD---YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 125 -----DGPSTLPREKFLI 137
+ PS P + +L+
Sbjct: 215 ILEWLENPSNTPDKDYLL 232
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.2
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 12/30 (40%)
Query: 133 EKFLILVNQIFKVK-------PESEQAAAI 155
EK + K++ +S A AI
Sbjct: 18 EK-----QALKKLQASLKLYADDSAPALAI 42
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU;
2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Length = 121
Score = 25.2 bits (55), Expect = 9.0
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 100 EIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESE 150
++ G G Y + + DYF + FL +V F++
Sbjct: 53 PLLAGEELMSGEYVMEFHAGDYFASKN-MNAADQPFLTIVTVRFQLADPDA 102
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 25.9 bits (58), Expect = 9.2
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 96 DNLTEIIIGSNQDEGTYFLLYDFIDYFE 123
+L D Y++L DF DY E
Sbjct: 717 HSLIHGYGKDASDT--YYVLGDFADYRE 742
>1p5v_A CAF1M chaperone, chaperone protein CAF1M, CAF1M; chaperone-target
complex, chaperone-subunit complex, protein fiber; 1.70A
{Yersinia pestis} SCOP: b.1.11.1 b.7.2.1 PDB: 1p5u_A
1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A
Length = 235
Score = 26.0 bits (56), Expect = 9.5
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 125 DGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHTSFTSRELTFLILVNQI 177
D E ++ +F++ + + + I +E + V I
Sbjct: 50 DENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGI 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,927,928
Number of extensions: 170221
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 33
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.8 bits)