RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15829
(193 letters)
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 100 bits (248), Expect = 2e-25
Identities = 82/155 (52%), Positives = 113/155 (72%), Gaps = 3/155 (1%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
MQSGT+NAPWS+MT+E+AVEI + L++D CN + L+ NP VMSC+ +VD+KTIS Q
Sbjct: 260 MQSGTMNAPWSHMTSEKAVEIGKALINDCNCN-ASMLKTNPAHVMSCMRSVDAKTISVQQ 318
Query: 61 WNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFID 120
WNSY+ IL F SAPTIDG +P P+ + + D +I++G+ +DEGTYFLLYDFID
Sbjct: 319 WNSYSGILSFPSAPTIDGAFLPADPMTL--MKTADLKDYDILMGNVRDEGTYFLLYDFID 376
Query: 121 YFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAI 155
YF+KD + LPR+K+L ++N IF ++E+ A I
Sbjct: 377 YFDKDDATALPRDKYLEIMNNIFGKATQAEREAII 411
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 60.9 bits (146), Expect = 8e-12
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
+QSGT N PW+ ++A A A L VGC N +++CL ++ + +
Sbjct: 227 LQSGTPNGPWATVSAGEARRRATLLARLVGCP-PGGAGGNDTELIACLRTRPAQDLVDHE 285
Query: 61 WN--SYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDF 118
W+ +I F+ P +DG+ + P A+I D ++++G +DEG+YFL+Y
Sbjct: 286 WHVLPQESIFRFSFVPVVDGDFLSDTPEALINT--GDFQDLQVLVGVVKDEGSYFLVYG- 342
Query: 119 IDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIH 157
+ F KD S + R +FL V + A ++H
Sbjct: 343 VPGFSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLH 381
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 526
Score = 59.4 bits (142), Expect = 3e-11
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTI--SS 58
+QSG+ NAPW+ + A L GC+ +N ++ CL D + I +
Sbjct: 219 LQSGSFNAPWAVTSLYEARNRTLNLAKLTGCSR-----ENETEIIKCLRNKDPQEILLNE 273
Query: 59 MQWNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDF 118
Y L PT+DG+ + P ++E T+I++G N+DEGT FL+Y
Sbjct: 274 AFVVPYGTPLSVNFGPTVDGDFLTDMPDILLELGQFKK--TQILVGVNKDEGTAFLVYG- 330
Query: 119 IDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIH 157
F KD S + R++F + F E + + + H
Sbjct: 331 APGFSKDNNSIITRKEFQEGLKIFFPGVSEFGKESILFH 369
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 41.7 bits (96), Expect = 3e-05
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 4/112 (3%)
Query: 9 PWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQWNSYTAIL 68
P+ ++ + GC+ + + D E + S +V +S +L
Sbjct: 254 PYHDSSSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLL 313
Query: 69 G--FTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDF 118
P DG ++P + S I G+ +DEGT F
Sbjct: 314 PQFLGFGPRPDGNIIPDAAYEL--FRSGRYAKVPYISGNQEDEGTAFAPVAL 363
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 39.3 bits (90), Expect = 2e-04
Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 20/187 (10%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTI---- 56
+SG + +A ++ GC T ++ CL + +
Sbjct: 225 SESGVALTSV-LVKKGDVKPLAEQIAITAGCKTT-----TSAVMVHCLRQKTEEELLETT 278
Query: 57 -----SSMQWNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGT 111
S+ IDG L+ K P + + + ++G N+ E
Sbjct: 279 LKMKFLSLDLQGDPRESQPLLGTVIDGMLLLKTPEELQAERNFHTV--PYMVGINKQEFG 336
Query: 112 YFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKHTSFTSRELTFL 171
+ + + L ++ + L+ + + + +++ EK+ T +
Sbjct: 337 WLIPMLMSYPLSEGQ---LDQKTAMSLLWKSYPLVCIAKELIPEATEKYLGGTDDTVKKK 393
Query: 172 ILVNQIF 178
L +
Sbjct: 394 DLFLDLI 400
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 33.1 bits (74), Expect = 0.017
Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 11/154 (7%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
M+SG A A + L G N E +R+ + K ++
Sbjct: 212 MESGASRTMTKEQAASTAAAFLQVL----GIN-----ESQLDRLHTVAAEDLLKAADQLR 262
Query: 61 WNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFID 120
I P +D + +P+ P + ++IG+ +DEG F D
Sbjct: 263 IAEKENIFQLFFQPALDPKTLPEEP--EKSIAEGAASGIPLLIGTTRDEGYLFFTPDSDV 320
Query: 121 YFEKDGPSTLPREKFLILVNQIFKVKPESEQAAA 154
+ ++ + L L + + P S ++
Sbjct: 321 HSQETLDAALEYLLGKPLAEKAADLYPRSLESQI 354
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 32.0 bits (71), Expect = 0.040
Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 14/149 (9%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
MQSG + P + EI + GC + ++CL + S T+
Sbjct: 239 MQSGAM-VPSDPVDGTYGNEIYDLFVSSAGCG-------SASDKLACLRSASSDTLLDAT 290
Query: 61 WNSYTAIL----GFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLY 116
N+ + + P DG+ + +IIG DEGT F L
Sbjct: 291 NNTPGFLAYSSLRLSYLPRPDGKNITDDM--YKLVRDGKYASVPVIIGDQNDEGTIFGLS 348
Query: 117 DFIDYFEKDGPSTLPREKFLILVNQIFKV 145
+ + +I +
Sbjct: 349 SLNVTTNAQARAYFKQSFIHASDAEIDTL 377
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 31.3 bits (69), Expect = 0.065
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 6/120 (5%)
Query: 1 MQSGTLNAPWSYMTAERAVEIARKLLDDVGCNGTTNLEDNPERVMSCLGAVDSKTISSMQ 60
++S + E E D + +LE E+ ++ + T S
Sbjct: 215 VESSFWPTQRTVSEMEFQFERFVN--DTGCSSARDSLECLREQDIATI--QKGNTGSPFP 270
Query: 61 WNSYTAILGFTSAPTIDGELVPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFID 120
S + + + P DG LVP + + +++G + DEG+ F
Sbjct: 271 GGSSSPLPDWYFLPVTDGSLVPDELYNA--FDAGNFIKVPVLVGDDTDEGSNFAYNASSS 328
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead
seabream (Sparus aurata) [TaxId: 8175]}
Length = 116
Score = 29.4 bits (66), Expect = 0.12
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 98 LTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQ 151
+ +I G Y + +D Y+ G + F + +F PE
Sbjct: 47 IHNLITEQQFPAGVYRVEFDTKAYWTNQGSTP-----FHEVAEVVFDAHPEGHG 95
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 27.5 bits (61), Expect = 0.47
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 98 LTEIIIGSNQDEGTYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQ 151
L + EG Y + D Y++ G S F +F +
Sbjct: 46 LHGLTTEEEFVEGIYKVEIDTKSYWKALGISP-----FHEHAEVVFTANDSGPR 94
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase,
phosphotransferase subunit DhaM {Lactococcus lactis
[TaxId: 1358]}
Length = 123
Score = 27.8 bits (62), Expect = 0.50
Identities = 7/51 (13%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 11 SYMTAERAVEIARKLLDDV-----GCNGTTNLEDNPERVMSCLGAVDSKTI 56
S A ++ R++ ++ G + + +RVM+ + ++ +
Sbjct: 11 SPEIASGLKKLIREVAKNISLTAIGGLENGEIGTSFDRVMNAIEENEADNL 61
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain
{Thermoanaerobacterium saccharolyticum [TaxId: 28896]}
Length = 346
Score = 28.1 bits (61), Expect = 0.62
Identities = 21/144 (14%), Positives = 34/144 (23%), Gaps = 3/144 (2%)
Query: 7 NAPWSYMTAERAVEIARKLLDDVGCN--GTTNLEDNPERVMSCLGAVDSKTISSMQWNSY 64
A + +D V + + E P + + +
Sbjct: 190 GADYWIEDFLNFCYEENVPVDFVSRHAYTSKQGEYTPHLIYQEIMPSEYMLNEFKTVREI 249
Query: 65 TAILGFTSAPTIDGEL-VPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFIDYFE 123
F + P E P + D + I+ D F + F D FE
Sbjct: 250 IKNSHFPNLPFHITEYNTSYSPQNPVHDTPFNAAYIARILSEGGDYVDSFSYWTFSDVFE 309
Query: 124 KDGPSTLPREKFLILVNQIFKVKP 147
+ LV KP
Sbjct: 310 ERDVPRSQFHGGFGLVALNMIPKP 333
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 26.2 bits (57), Expect = 3.2
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 113 FLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPE 148
F+ ++F E+ +++ F I + +K PE
Sbjct: 8 FVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPE 43
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 24.8 bits (54), Expect = 4.5
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 106 NQDEGTYFLLYDFIDYFEK-----DGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEKH 160
+E Y L ++ + D ++ I K E+E+ + + ++
Sbjct: 49 RDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRY 108
Query: 161 TSFTSREL 168
R+
Sbjct: 109 EEAEVRKK 116
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
factor A (PrfA) {Bacillus stearothermophilus [TaxId:
1422]}
Length = 168
Score = 24.7 bits (54), Expect = 6.5
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 81 VPKHPLAMIEDMSKDDNLTEIIIGSNQDEGTYFLLYDFIDYF----EKDGPSTLPREKF 135
H + +E + + I+ + TY L + + E G ++P+++
Sbjct: 84 FHAHQIRHMEQVVAHGGICFAILRFSLLNETYLLDASHLIAWWNKQEAGGRKSIPKQEI 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 702,868
Number of extensions: 31359
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 15
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)