BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15830
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RC35|EMC4_PONAB ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2
SV=1
Length = 183
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH-QVLGQKFIYFI 60
+PMN+ IMYMAGN+ISIFP MMV M+ RPI+AL +S++FKM+E Q Q +Y I
Sbjct: 79 QIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFLQGLVYLI 138
Query: 61 GNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104
GN++ + LA+YKCQSMGLLP+H+SDWL+F+ P R+E+S GG++
Sbjct: 139 GNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLL 182
>sp|Q5J8M3|EMC4_HUMAN ER membrane protein complex subunit 4 OS=Homo sapiens GN=EMC4 PE=1
SV=2
Length = 183
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH-QVLGQKFIYFI 60
+PMN+ IMYMAGN+ISIFP MMV M+ RPI+AL +S++FKM+E Q Q +Y I
Sbjct: 79 QIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFLQGLVYLI 138
Query: 61 GNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104
GN++ + LA+YKCQSMGLLP+H+SDWL+F+ P R+E+S GG++
Sbjct: 139 GNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLL 182
>sp|Q3T0K8|EMC4_BOVIN ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2
SV=1
Length = 183
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH-QVLGQKFIYFI 60
+PMN+ IMYMAGN+ISIFP MMV M+ RPI+AL +S++FKM+E Q Q +Y I
Sbjct: 79 QIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFLQGLVYLI 138
Query: 61 GNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104
GN++ + LA+YKCQSMGLLP+H+SDWL+F+ P R+E+S GG++
Sbjct: 139 GNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLL 182
>sp|Q9CZX9|EMC4_MOUSE ER membrane protein complex subunit 4 OS=Mus musculus GN=Emc4 PE=2
SV=1
Length = 183
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH-QVLGQKFIYFI 60
+PMN+ IMYMAGN+ISIFP MMV M+ RPI+AL +S++FKM+E Q Q +Y I
Sbjct: 79 QIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLESSSQKFLQGLVYLI 138
Query: 61 GNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104
GN++ + LA+YKCQSMGLLP+H+SDWL+F+ P R+E+S GG++
Sbjct: 139 GNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLL 182
>sp|Q6PBF7|EMC4_XENTR ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4
PE=2 SV=1
Length = 180
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 82/107 (76%), Gaps = 7/107 (6%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGHQVLGQKF----I 57
+PMN+ IMYMAGN+ISIFPIMMV M+ RPI+AL ++FK++E GQ+F +
Sbjct: 76 QIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLESS---GQRFLQGLV 132
Query: 58 YFIGNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104
Y IGN++ + LA+YKCQSMGLLP+H+SDWL+F+ P R+EY+ GG++
Sbjct: 133 YLIGNLLGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEYTGGGLL 179
>sp|Q6GR43|EMC4_XENLA ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4
PE=2 SV=1
Length = 180
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 79/103 (76%), Gaps = 3/103 (2%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIE--GHQVLGQKFIYF 59
+PMN+ IMYMAGN+ISIFPIMMV M+ RPI+AL ++FK++E G + L Q +Y
Sbjct: 76 QIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLESSGQRFL-QGLVYL 134
Query: 60 IGNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGG 102
IGN++ + L +YKCQSMGLLP+H+SDWL+F+ P R+EY+ GG
Sbjct: 135 IGNLLGLALGVYKCQSMGLLPTHASDWLAFIEPPERMEYTGGG 177
>sp|Q6P011|EMC4_DANRE ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2
SV=1
Length = 189
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH-QVLGQKFIYFI 60
+PMN+ IMYM+GN+ISIFPIMMV M+ RPI+AL ++S++FK++E Q Q +Y I
Sbjct: 85 QIPMNLFIMYMSGNTISIFPIMMVCMMAWRPIQALMSMSATFKLLESSSQQWLQGLVYLI 144
Query: 61 GNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104
GN++ LA+YKCQSMGLLP+HSSDWL+F+ P R+E GG+V
Sbjct: 145 GNLLGSALAIYKCQSMGLLPTHSSDWLAFIEPPQRLEIMGGGMV 188
>sp|B5XB24|EMC4_SALSA ER membrane protein complex subunit 4 OS=Salmo salar GN=emc4 PE=2
SV=1
Length = 188
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEG-HQVLGQKFIYFI 60
+PMN+ IMYM+GN+ISIFPIMMV M+ RPI+AL ++S++FK++E +Q Q +Y +
Sbjct: 84 QIPMNLFIMYMSGNTISIFPIMMVCMMAWRPIQALMSMSATFKLLENSNQQWLQGLVYSV 143
Query: 61 GNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104
GN++ LA+YKCQSMGLLP+HSSDWL+F+ P R+E GG+V
Sbjct: 144 GNLLGSALAIYKCQSMGLLPTHSSDWLAFIEPPQRMEIMGGGMV 187
>sp|P53073|EMC4_YEAST ER membrane protein complex subunit 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMC4 PE=1 SV=1
Length = 190
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 3 VPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH-----QVLGQKFI 57
+PMNI + YM+G S+ I PIM ML+ PIKA+F+ S+FK + G+ QV F+
Sbjct: 84 IPMNIFMSYMSGTSLQIIPIMTALMLLSGPIKAIFSTRSAFKPVLGNKATQSQVQTAMFM 143
Query: 58 YFIGNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVVY 105
Y + V + + K SMGL+P+ DW LP RI + + G+ +
Sbjct: 144 YIVFQGVLMYIGYRKLNSMGLIPNAKGDW----LPWERIAHYNNGLQW 187
>sp|O94520|YQ13_SCHPO ER membrane protein complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1281.03c PE=3 SV=1
Length = 193
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGHQ------VLGQK 55
+PMN ++ YM+GNS+ IF IM ML+V P+KA+ + S+F +G +G
Sbjct: 85 QIPMNAILAYMSGNSLQIFSIMTTLMLLVNPLKAITSTGSAFTPFKGTHPGTLWPAMG-- 142
Query: 56 FIYFIGNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSG 101
Y + ++ + + +YK Q MGLLP+ +SDWL++ + + ++ S G
Sbjct: 143 -AYILFQLLLMGIGVYKLQRMGLLPTTTSDWLAWEVSKVFMDRSYG 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,770,459
Number of Sequences: 539616
Number of extensions: 1115313
Number of successful extensions: 2906
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2886
Number of HSP's gapped (non-prelim): 11
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)