Query psy15830
Match_columns 106
No_of_seqs 106 out of 164
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 22:26:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3318|consensus 100.0 2E-52 4.4E-57 315.5 9.0 104 2-105 70-176 (178)
2 PF06417 DUF1077: Protein of u 100.0 5.5E-52 1.2E-56 299.7 8.6 93 2-94 26-124 (124)
3 PRK09555 feoA ferrous iron tra 62.4 4.2 9.1E-05 26.6 1.1 36 70-105 23-58 (74)
4 PF13124 DUF3963: Protein of u 56.2 11 0.00025 22.5 2.1 35 37-71 2-38 (40)
5 KOG0527|consensus 51.0 5.5 0.00012 33.2 0.2 9 4-12 66-74 (331)
6 PF12037 DUF3523: Domain of un 50.3 16 0.00035 30.0 2.8 39 34-72 211-253 (276)
7 KOG4655|consensus 39.8 9.7 0.00021 29.6 0.0 16 69-84 77-92 (181)
8 PRK04051 rps4p 30S ribosomal p 33.3 25 0.00055 26.9 1.4 15 68-82 72-86 (177)
9 PF10032 Pho88: Phosphate tran 33.3 49 0.0011 25.6 3.0 27 45-71 22-49 (192)
10 cd00084 HMG-box High Mobility 32.5 21 0.00044 21.0 0.6 11 3-13 3-13 (66)
11 PF05289 BLYB: Borrelia hemoly 28.6 1.2E+02 0.0026 21.8 4.0 42 33-74 12-54 (105)
12 cd01390 HMGB-UBF_HMG-box HMGB- 27.6 28 0.0006 20.6 0.6 10 4-13 4-13 (66)
13 KOG0528|consensus 24.8 23 0.0005 31.5 -0.1 9 4-12 329-337 (511)
14 COG1918 FeoA Fe2+ transport sy 24.3 48 0.001 21.9 1.3 35 70-104 24-58 (75)
15 CHL00077 rps18 ribosomal prote 24.2 51 0.0011 22.7 1.5 21 65-85 61-81 (86)
16 TIGR01018 rpsD_arch ribosomal 24.1 44 0.00096 25.3 1.3 14 67-80 71-84 (162)
17 cd01389 MATA_HMG-box MATA_HMG- 21.8 40 0.00086 21.2 0.6 10 4-13 5-14 (77)
18 PF02300 Fumarate_red_C: Fumar 21.4 1.7E+02 0.0037 21.6 3.9 64 7-74 21-84 (129)
19 cd01388 SOX-TCF_HMG-box SOX-TC 21.3 43 0.00094 20.9 0.6 10 4-13 5-14 (72)
20 PLN02720 complex II 20.9 80 0.0017 23.7 2.1 18 60-77 109-126 (140)
21 cd00546 QFR_TypeD_subunitC Qui 20.7 2.2E+02 0.0048 20.9 4.3 72 7-82 18-90 (124)
No 1
>KOG3318|consensus
Probab=100.00 E-value=2e-52 Score=315.47 Aligned_cols=104 Identities=57% Similarity=1.024 Sum_probs=101.2
Q ss_pred CchhhhHHHHhcCCcceehhHHHHHHHHHHHHHHHhcchhhhcccccc---cchhhHHHHHHHHHHHHHHHHHHhhcCCc
Q psy15830 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH---QVLGQKFIYFIGNIVNIVLALYKCQSMGL 78 (106)
Q Consensus 2 ~ipMn~FMmyMsGnsiqIFsImmv~m~~~~Pikai~~~~~~F~~~e~~---~~~~~klvyi~~~l~~l~~glyK~~~MGL 78 (106)
|||||+|||||+|||+||||||||+|++|||||||++++++||+||++ |.+.+|++|+++|++++++|+|||++|||
T Consensus 70 ~iPMN~FmmYMaGnsvsIFpIMm~~Mml~~PikAl~st~stFkp~eg~~~~q~~~~~lvy~l~nL~~~~lgvyKlqsMGL 149 (178)
T KOG3318|consen 70 NIPMNLFMMYMAGNSVSIFPIMMVLMMLWRPIKALFSTGSTFKPFEGNKASQLFMAKLVYLLGNLGGLALGVYKLQSMGL 149 (178)
T ss_pred hccHHHHHHHHcCCceEEeHHHHHHHHHHHHHHHHHhhhhhcccccCCchhhhHHHHHHHHHHhhhHHHHHHHhhhhcCC
Confidence 799999999999999999999999999999999999999999999985 78999999999999999999999999999
Q ss_pred ccCCCCCcccccCCccceeeecccccc
Q psy15830 79 LPSHSSDWLSFVLPQTRIEYSSGGVVY 105 (106)
Q Consensus 79 LPt~~sDWla~~~~~~~~E~s~gg~~l 105 (106)
||||+||||+|++||.++|++.|+..+
T Consensus 150 LPt~aSDWLa~~~pp~~~~ys~g~~~f 176 (178)
T KOG3318|consen 150 LPTHASDWLAFEPPPFRLEYSGGPMCF 176 (178)
T ss_pred CCCCcccchhccCCcceeeecCCceee
Confidence 999999999999999999999998764
No 2
>PF06417 DUF1077: Protein of unknown function (DUF1077); InterPro: IPR009445 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=100.00 E-value=5.5e-52 Score=299.72 Aligned_cols=93 Identities=56% Similarity=1.037 Sum_probs=90.4
Q ss_pred CchhhhHHHHhcCCcceehhHHHHHHHHHHHHHHHhcchhhhcccccc------cchhhHHHHHHHHHHHHHHHHHHhhc
Q psy15830 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH------QVLGQKFIYFIGNIVNIVLALYKCQS 75 (106)
Q Consensus 2 ~ipMn~FMmyMsGnsiqIFsImmv~m~~~~Pikai~~~~~~F~~~e~~------~~~~~klvyi~~~l~~l~~glyK~~~ 75 (106)
|||||+|||||||||+||||||||+|+++||+|||+++|++|+++|++ +.+.||++||+||++++++|+||||+
T Consensus 26 ~ipMn~FMmyMsGnsi~IFsIm~v~m~~~~Pikai~~~~~~F~~~~~~~~~~~~~~~~~kl~yvl~ql~~l~~gl~K~~~ 105 (124)
T PF06417_consen 26 SIPMNLFMMYMSGNSIQIFSIMMVGMLLWNPIKAIFSVNQAFKPFEGDSNDNRSQLLLQKLVYVLCQLLGLALGLYKCNS 105 (124)
T ss_pred hhhHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 799999999999999999999999999999999999999999999987 67899999999999999999999999
Q ss_pred CCcccCCCCCcccccCCcc
Q psy15830 76 MGLLPSHSSDWLSFVLPQT 94 (106)
Q Consensus 76 MGLLPt~~sDWla~~~~~~ 94 (106)
|||||||+||||+|++|++
T Consensus 106 MGLLPt~~sDWla~~~p~~ 124 (124)
T PF06417_consen 106 MGLLPTTSSDWLAFEPPQQ 124 (124)
T ss_pred ccCCCCCcccccccCCCCC
Confidence 9999999999999999975
No 3
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=62.36 E-value=4.2 Score=26.64 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHhhcCCcccCCCCCcccccCCccceeeecccccc
Q psy15830 70 LYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVVY 105 (106)
Q Consensus 70 lyK~~~MGLLPt~~sDWla~~~~~~~~E~s~gg~~l 105 (106)
--||.+||++|-++=.-+.--|...++|+...|..+
T Consensus 23 ~~rL~~mGl~pG~~V~v~~~aP~gdPi~i~v~g~~i 58 (74)
T PRK09555 23 RQKLLSLGMLPGSSFNVVRVAPLGDPIHIETRRVSL 58 (74)
T ss_pred HHHHHHcCCCCCCEEEEEEECCCCCCEEEEECCEEE
Confidence 457889999999998888777778899988877543
No 4
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=56.25 E-value=11 Score=22.55 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=26.3
Q ss_pred hcchhhhcc--cccccchhhHHHHHHHHHHHHHHHHH
Q psy15830 37 FTLSSSFKM--IEGHQVLGQKFIYFIGNIVNIVLALY 71 (106)
Q Consensus 37 ~~~~~~F~~--~e~~~~~~~klvyi~~~l~~l~~gly 71 (106)
+.++.+|-. |++-|++.+.+.||+.-++...+++|
T Consensus 2 ~~i~~~fieryfddiqkwirnit~cfal~vv~lvslw 38 (40)
T PF13124_consen 2 LYIYTAFIERYFDDIQKWIRNITFCFALLVVVLVSLW 38 (40)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666633 44448899999999999998888887
No 5
>KOG0527|consensus
Probab=51.01 E-value=5.5 Score=33.24 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=7.2
Q ss_pred hhhhHHHHh
Q psy15830 4 PMNIVIMYM 12 (106)
Q Consensus 4 pMn~FMmyM 12 (106)
|||+||.|=
T Consensus 66 PMNAFMVWS 74 (331)
T KOG0527|consen 66 PMNAFMVWS 74 (331)
T ss_pred Ccchhhhhh
Confidence 788888874
No 6
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=50.29 E-value=16 Score=29.95 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=30.0
Q ss_pred HHHhcchhhhcccccc-cch---hhHHHHHHHHHHHHHHHHHH
Q psy15830 34 KALFTLSSSFKMIEGH-QVL---GQKFIYFIGNIVNIVLALYK 72 (106)
Q Consensus 34 kai~~~~~~F~~~e~~-~~~---~~klvyi~~~l~~l~~glyK 72 (106)
+.|-++|.+|..+.+. ..+ ..|++-.++-+.++++|+|-
T Consensus 211 t~lesI~t~f~~lg~G~~~lltD~~kl~~~vgg~T~LA~GvYt 253 (276)
T PF12037_consen 211 TVLESINTTFSHLGEGFRALLTDRDKLTTTVGGLTALAAGVYT 253 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 4455788888888765 322 37899999999999999994
No 7
>KOG4655|consensus
Probab=39.77 E-value=9.7 Score=29.61 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=13.4
Q ss_pred HHHHhhcCCcccCCCC
Q psy15830 69 ALYKCQSMGLLPSHSS 84 (106)
Q Consensus 69 glyK~~~MGLLPt~~s 84 (106)
-|=|+.+||++||.++
T Consensus 77 LL~kly~~GvipTr~~ 92 (181)
T KOG4655|consen 77 LLEKLYAMGVIPTRKS 92 (181)
T ss_pred hhccccccceecchhh
Confidence 3569999999999875
No 8
>PRK04051 rps4p 30S ribosomal protein S4P; Validated
Probab=33.31 E-value=25 Score=26.86 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.4
Q ss_pred HHHHHhhcCCcccCC
Q psy15830 68 LALYKCQSMGLLPSH 82 (106)
Q Consensus 68 ~glyK~~~MGLLPt~ 82 (106)
.-+.||+.||+||++
T Consensus 72 ~Ll~kL~~~Gil~~~ 86 (177)
T PRK04051 72 QLLGKLKRYGILKEN 86 (177)
T ss_pred HHHHHHHHcCCCCCC
Confidence 447899999999874
No 9
>PF10032 Pho88: Phosphate transport (Pho88); InterPro: IPR019263 This entry represents proteins involved in inorganic phosphate transport, as well as telomere length regulation and maintenance [, , , ].
Probab=33.29 E-value=49 Score=25.59 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=21.6
Q ss_pred cccccc-chhhHHHHHHHHHHHHHHHHH
Q psy15830 45 MIEGHQ-VLGQKFIYFIGNIVNIVLALY 71 (106)
Q Consensus 45 ~~e~~~-~~~~klvyi~~~l~~l~~gly 71 (106)
++|+.+ ...-|.+|+++|++.+++-+|
T Consensus 22 d~~dP~v~~~vR~~y~~s~~i~~~~y~y 49 (192)
T PF10032_consen 22 DFEDPQVLFYVRIAYVASQLIILGVYLY 49 (192)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456654 466899999999999998876
No 10
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=32.48 E-value=21 Score=20.95 Aligned_cols=11 Identities=9% Similarity=0.446 Sum_probs=8.2
Q ss_pred chhhhHHHHhc
Q psy15830 3 VPMNIVIMYMA 13 (106)
Q Consensus 3 ipMn~FMmyMs 13 (106)
-|+|.||+|+.
T Consensus 3 rp~~af~~f~~ 13 (66)
T cd00084 3 RPLSAYFLFSQ 13 (66)
T ss_pred CCCcHHHHHHH
Confidence 37888888874
No 11
>PF05289 BLYB: Borrelia hemolysin accessory protein; InterPro: IPR007953 This entry represents the borrelial prophage-encoded protein BlyB. Originally BlyB and its partner, the membrane-bound protein BlyA, were thought to comprise a haemolysis system. It is now thought, however, that BlyA and BlyB function instead as a holin or holin-like system [].
Probab=28.57 E-value=1.2e+02 Score=21.82 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=33.5
Q ss_pred HHHHhcchhhhcccccc-cchhhHHHHHHHHHHHHHHHHHHhh
Q psy15830 33 IKALFTLSSSFKMIEGH-QVLGQKFIYFIGNIVNIVLALYKCQ 74 (106)
Q Consensus 33 ikai~~~~~~F~~~e~~-~~~~~klvyi~~~l~~l~~glyK~~ 74 (106)
+.||-+.=+.|+.||++ +...+|-.|.+.++=..---+||-+
T Consensus 12 l~sisnLid~fs~fe~ef~e~ahKGf~Lv~~LYs~y~~IYk~n 54 (105)
T PF05289_consen 12 LTSISNLIDFFSKFEDEFDEIAHKGFFLVYDLYSHYTLIYKSN 54 (105)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666889999987 6688999999999888888888854
No 12
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=27.57 E-value=28 Score=20.62 Aligned_cols=10 Identities=10% Similarity=0.557 Sum_probs=7.6
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|.|++|+.
T Consensus 4 p~saf~~f~~ 13 (66)
T cd01390 4 PLSAYFLFSQ 13 (66)
T ss_pred CCcHHHHHHH
Confidence 7788888864
No 13
>KOG0528|consensus
Probab=24.83 E-value=23 Score=31.45 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=7.1
Q ss_pred hhhhHHHHh
Q psy15830 4 PMNIVIMYM 12 (106)
Q Consensus 4 pMn~FMmyM 12 (106)
|||+||.|=
T Consensus 329 PMNAFMVWA 337 (511)
T KOG0528|consen 329 PMNAFMVWA 337 (511)
T ss_pred Ccchhhccc
Confidence 788888883
No 14
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=24.28 E-value=48 Score=21.93 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=24.4
Q ss_pred HHHhhcCCcccCCCCCcccccCCccceeeeccccc
Q psy15830 70 LYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104 (106)
Q Consensus 70 lyK~~~MGLLPt~~sDWla~~~~~~~~E~s~gg~~ 104 (106)
-.|+-+||++|-++=-=+.--+-.++++...+|..
T Consensus 24 ~~RL~~mG~~~G~~i~vi~~aplgdPi~v~v~g~~ 58 (75)
T COG1918 24 RRRLLSMGIVPGASITVVRKAPLGDPILVEVRGTR 58 (75)
T ss_pred HHHHHHcCCCCCCEEEEEEecCCCCCEEEEECCEE
Confidence 47889999999887655555555566666666543
No 15
>CHL00077 rps18 ribosomal protein S18
Probab=24.16 E-value=51 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcCCcccCCCCC
Q psy15830 65 NIVLALYKCQSMGLLPSHSSD 85 (106)
Q Consensus 65 ~l~~glyK~~~MGLLPt~~sD 85 (106)
-++-++-+...|||||....|
T Consensus 61 ~l~~aIKrAR~~gLlP~~~~~ 81 (86)
T CHL00077 61 LITKAIKQARILSLLPFLNNE 81 (86)
T ss_pred HHHHHHHHHHHHhcCCccccc
Confidence 368899999999999987765
No 16
>TIGR01018 rpsD_arch ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type). This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4.
Probab=24.07 E-value=44 Score=25.27 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.7
Q ss_pred HHHHHHhhcCCccc
Q psy15830 67 VLALYKCQSMGLLP 80 (106)
Q Consensus 67 ~~glyK~~~MGLLP 80 (106)
..-+.||+.||+||
T Consensus 71 ~~LL~kL~~~Gll~ 84 (162)
T TIGR01018 71 NQLLRRLVRLGILD 84 (162)
T ss_pred HHHHHHHHHcCCCc
Confidence 34578999999998
No 17
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=21.82 E-value=40 Score=21.24 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=8.0
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|..
T Consensus 5 P~naf~lf~~ 14 (77)
T cd01389 5 PRNAFILYRQ 14 (77)
T ss_pred CCcHHHHHHH
Confidence 7888888865
No 18
>PF02300 Fumarate_red_C: Fumarate reductase subunit C; InterPro: IPR003510 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 15kDa hydrophobic subunit C.; GO: 0016020 membrane; PDB: 1KFY_O 1L0V_O 3P4S_O 2B76_O 3CIR_O 3P4R_C 1KF6_O 3P4P_C 3P4Q_C.
Probab=21.39 E-value=1.7e+02 Score=21.57 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=46.5
Q ss_pred hHHHHhcCCcceehhHHHHHHHHHHHHHHHhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy15830 7 IVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGHQVLGQKFIYFIGNIVNIVLALYKCQ 74 (106)
Q Consensus 7 ~FMmyMsGnsiqIFsImmv~m~~~~Pikai~~~~~~F~~~e~~~~~~~klvyi~~~l~~l~~glyK~~ 74 (106)
++-.||--++-.++..-...-++++ +-++-+-.++++.+-+ ++|-=+-++.|+++++.++|+--
T Consensus 21 FY~~YMlRE~T~v~~~~f~l~Ll~G-l~~L~~G~~aw~~~~~---fl~nP~vv~lnliaLaa~L~Ha~ 84 (129)
T PF02300_consen 21 FYRFYMLREGTSVPVAWFSLVLLYG-LFALGQGPEAWQGWLA---FLQNPIVVILNLIALAAALLHAK 84 (129)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHH---HHTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHccCHHHHHHHHH---HHcCcHHHHHHHHHHHHHHHHHH
Confidence 5678898888888888777777765 3344444445555543 67777889999999999999754
No 19
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=21.28 E-value=43 Score=20.85 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=7.8
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+|+.|+.
T Consensus 5 P~naf~~F~~ 14 (72)
T cd01388 5 PMNAFMLFSK 14 (72)
T ss_pred CCcHHHHHHH
Confidence 7888888863
No 20
>PLN02720 complex II
Probab=20.88 E-value=80 Score=23.69 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhcCC
Q psy15830 60 IGNIVNIVLALYKCQSMG 77 (106)
Q Consensus 60 ~~~l~~l~~glyK~~~MG 77 (106)
...++...++|||++.|+
T Consensus 109 G~EvAnh~lqLYk~d~m~ 126 (140)
T PLN02720 109 GQEVANHWLQLYKFDTMA 126 (140)
T ss_pred hHHHHHHHHHHHhccccc
Confidence 345677788999999997
No 21
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=20.69 E-value=2.2e+02 Score=20.91 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=50.8
Q ss_pred hHHHHhcCCcceehhHHHHHHHHHHHHHHHhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHhhc-CCcccCC
Q psy15830 7 IVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGHQVLGQKFIYFIGNIVNIVLALYKCQS-MGLLPSH 82 (106)
Q Consensus 7 ~FMmyMsGnsiqIFsImmv~m~~~~Pikai~~~~~~F~~~e~~~~~~~klvyi~~~l~~l~~glyK~~~-MGLLPt~ 82 (106)
++-.||--++-.++.+-...-++++ +-++-+=.++++.+-+ ++|-=+.++.|++.++.++|+-.+ =++.|-.
T Consensus 18 FYr~YMlRE~T~v~~~~f~lvLl~G-l~~L~~g~~aw~~f~~---flqnPiv~~lniiaL~a~L~Ha~TwF~~~Pka 90 (124)
T cd00546 18 FYRFYMLREATAVPTVWFSLVLLYG-LFALGSGPESWAGFVS---FLQNPIVVLLNIIALAAALLHAKTWFEMAPKV 90 (124)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHH---HHhCcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4667998888888888888877776 3345544455555544 677778899999999999997543 3334433
Done!