Query psy15830
Match_columns 106
No_of_seqs 106 out of 164
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:26:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a3n_A Transcription factor SO 29.3 14 0.00048 21.6 0.4 10 4-13 6-15 (71)
2 2bp3_S Platelet glycoprotein I 27.6 16 0.00055 19.3 0.4 20 77-96 3-22 (26)
3 3u2b_C Transcription factor SO 26.6 17 0.00057 21.9 0.4 10 4-13 6-15 (79)
4 3j20_D 30S ribosomal protein S 24.8 24 0.0008 26.0 1.0 15 69-83 73-87 (180)
5 1i11_A Transcription factor SO 24.6 19 0.00066 21.9 0.4 10 4-13 8-17 (81)
6 3f27_D Transcription factor SO 24.5 19 0.00064 21.9 0.3 10 4-13 10-19 (83)
7 2lx9_A Ferrous iron transport 24.2 27 0.00093 21.9 1.1 35 70-104 23-57 (83)
8 2lef_A LEF-1 HMG, protein (lym 23.4 21 0.00071 22.0 0.4 10 4-13 6-15 (86)
9 3r8n_R 30S ribosomal protein S 22.1 44 0.0015 20.1 1.7 19 65-83 35-53 (55)
10 1hry_A Human SRY; DNA, DNA-bin 19.6 28 0.00095 20.7 0.4 10 4-13 8-17 (76)
No 1
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=29.28 E-value=14 Score=21.65 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.1
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|+.
T Consensus 6 P~~af~lf~~ 15 (71)
T 4a3n_A 6 PMNAFMVWAK 15 (71)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8899999863
No 2
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=27.56 E-value=16 Score=19.26 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=16.0
Q ss_pred CcccCCCCCcccccCCccce
Q psy15830 77 GLLPSHSSDWLSFVLPQTRI 96 (106)
Q Consensus 77 GLLPt~~sDWla~~~~~~~~ 96 (106)
|.+||-+|.-.-|..|..++
T Consensus 3 gslptfrsslflwvr~ng~~ 22 (26)
T 2bp3_S 3 GSLPTFRSSLFLWVRPNGRV 22 (26)
T ss_pred ccccchhheEEEEEccCCee
Confidence 88999999888888776543
No 3
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=26.65 E-value=17 Score=21.90 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=8.3
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|..
T Consensus 6 P~naf~lf~~ 15 (79)
T 3u2b_C 6 PMNAFMVWSQ 15 (79)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8899999864
No 4
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.82 E-value=24 Score=25.96 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=12.4
Q ss_pred HHHHhhcCCcccCCC
Q psy15830 69 ALYKCQSMGLLPSHS 83 (106)
Q Consensus 69 glyK~~~MGLLPt~~ 83 (106)
-|-||+.||+||+.+
T Consensus 73 LL~kL~~~Gll~~~~ 87 (180)
T 3j20_D 73 LLARLKRLGLLPEDA 87 (180)
T ss_dssp HHHHHHHHTSSSSCC
T ss_pred HHHHHHHcCCCCCCC
Confidence 468999999999843
No 5
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.63 E-value=19 Score=21.89 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.2
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|..
T Consensus 8 P~naf~lf~~ 17 (81)
T 1i11_A 8 PMNAFMVWAK 17 (81)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7889998874
No 6
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=24.49 E-value=19 Score=21.94 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.2
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|+.
T Consensus 10 P~~af~lf~~ 19 (83)
T 3f27_D 10 PMNAFMVWAK 19 (83)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7899999864
No 7
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=24.20 E-value=27 Score=21.88 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.4
Q ss_pred HHHhhcCCcccCCCCCcccccCCccceeeeccccc
Q psy15830 70 LYKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104 (106)
Q Consensus 70 lyK~~~MGLLPt~~sDWla~~~~~~~~E~s~gg~~ 104 (106)
.-++.+||+.|-++=.-+.-.+-..++++..+|..
T Consensus 23 ~rrL~~mGl~pG~~V~Vi~~ap~ggPi~v~v~g~~ 57 (83)
T 2lx9_A 23 RQKLLSLGMLPGSSFNVVRVAPLGDPIHIETRRVS 57 (83)
T ss_dssp HHHHHHSSCCSSSEEEEEEECTTTCCEEEECSSCE
T ss_pred HHHHHHCCCCCCCEEEEEEeCCCCCcEEEEECCEE
Confidence 45789999999988777766555677887777643
No 8
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.44 E-value=21 Score=22.05 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=8.3
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|..
T Consensus 6 P~naf~lf~~ 15 (86)
T 2lef_A 6 PLNAFMLYMK 15 (86)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8889998875
No 9
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=22.08 E-value=44 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=15.7
Q ss_pred HHHHHHHHhhcCCcccCCC
Q psy15830 65 NIVLALYKCQSMGLLPSHS 83 (106)
Q Consensus 65 ~l~~glyK~~~MGLLPt~~ 83 (106)
-++-|+-+...|||||-+.
T Consensus 35 ~l~~AIKrAR~~~LlP~~~ 53 (55)
T 3r8n_R 35 QLARAIKRARYLSLLPYTD 53 (55)
T ss_dssp HHHHHHHHHHHTTSSCSCT
T ss_pred HHHHHHHHHHHhccCCccC
Confidence 3578899999999999753
No 10
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=19.62 E-value=28 Score=20.75 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=7.8
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|..
T Consensus 8 P~~af~lf~~ 17 (76)
T 1hry_A 8 PMNAFIVWSR 17 (76)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7888888875
Done!