Query psy15830
Match_columns 106
No_of_seqs 106 out of 164
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 22:27:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15830.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15830hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i11a_ a.21.1.1 (A:) Sox-5 {M 37.2 4.1 0.0003 23.3 0.4 10 4-13 6-15 (70)
2 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 34.2 4.8 0.00035 23.8 0.4 10 4-13 6-15 (80)
3 d2lefa_ a.21.1.1 (A:) Lymphoid 30.4 6.1 0.00044 23.4 0.4 10 4-13 6-15 (86)
4 d2qalr1 a.4.8.1 (R:19-73) Ribo 27.2 14 0.0011 20.7 1.7 18 65-82 35-52 (55)
5 d1j46a_ a.21.1.1 (A:) SRY {Hum 24.9 8.8 0.00064 22.6 0.4 10 4-13 8-17 (85)
6 d2gcxa1 b.34.1.2 (A:1-75) Ferr 22.4 16 0.0012 21.4 1.3 33 71-103 24-56 (75)
7 d2h3ja1 b.34.1.2 (A:1-75) Hypo 22.3 15 0.0011 21.3 1.1 34 71-104 25-58 (75)
8 d1qrva_ a.21.1.1 (A:) HMG-D {D 20.4 12 0.0009 21.1 0.4 10 4-13 7-16 (73)
9 d2uubr1 a.4.8.1 (R:19-88) Ribo 19.5 29 0.0021 20.4 2.0 19 65-83 47-65 (70)
10 d1ckta_ a.21.1.1 (A:) High mob 17.6 16 0.0011 20.4 0.4 10 4-13 5-14 (71)
No 1
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.21 E-value=4.1 Score=23.28 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=7.9
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|||+||+|+.
T Consensus 6 P~nay~lf~~ 15 (70)
T d1i11a_ 6 PMNAFMVWAK 15 (70)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7888888863
No 2
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.22 E-value=4.8 Score=23.76 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=8.3
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|+.
T Consensus 6 P~nAy~lF~~ 15 (80)
T d1gt0d_ 6 PMNAFMVWSR 15 (80)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8889998875
No 3
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.42 E-value=6.1 Score=23.38 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=8.0
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|..
T Consensus 6 P~naf~lF~~ 15 (86)
T d2lefa_ 6 PLNAFMLYMK 15 (86)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8899998853
No 4
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=27.16 E-value=14 Score=20.75 Aligned_cols=18 Identities=22% Similarity=0.443 Sum_probs=15.4
Q ss_pred HHHHHHHHhhcCCcccCC
Q psy15830 65 NIVLALYKCQSMGLLPSH 82 (106)
Q Consensus 65 ~l~~glyK~~~MGLLPt~ 82 (106)
-++-++-+...|||||-+
T Consensus 35 ~l~~aIkrAR~~gLlP~~ 52 (55)
T d2qalr1 35 QLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHTTSSCSS
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 367889999999999965
No 5
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.89 E-value=8.8 Score=22.56 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=7.8
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|+.
T Consensus 8 P~nay~lF~~ 17 (85)
T d1j46a_ 8 PMNAFIVWSR 17 (85)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7888888765
No 6
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=22.44 E-value=16 Score=21.40 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=23.5
Q ss_pred HHhhcCCcccCCCCCcccccCCccceeeecccc
Q psy15830 71 YKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGV 103 (106)
Q Consensus 71 yK~~~MGLLPt~~sDWla~~~~~~~~E~s~gg~ 103 (106)
-|+.+||+.|-+.=.=+.--+-..++++..+|.
T Consensus 24 ~RL~~mGl~pG~~V~v~~~ap~g~P~~i~v~~~ 56 (75)
T d2gcxa1 24 QKLLSLGMLPGSSFHVVRVAPLGDPVHIETRRV 56 (75)
T ss_dssp HHHTTTTCCSSEEEEECCCCSSCCEEEEEETTE
T ss_pred HHHHHcCCCCCCEEEEEEECCCCCCEEEEECCE
Confidence 478999999988777666544456676666654
No 7
>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.32 E-value=15 Score=21.28 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=23.2
Q ss_pred HHhhcCCcccCCCCCcccccCCccceeeeccccc
Q psy15830 71 YKCQSMGLLPSHSSDWLSFVLPQTRIEYSSGGVV 104 (106)
Q Consensus 71 yK~~~MGLLPt~~sDWla~~~~~~~~E~s~gg~~ 104 (106)
-|+.+||+.|-+.=.=+.--+-..++++..+|..
T Consensus 25 ~rL~~mG~~~G~~v~v~~~~p~g~p~~v~v~~~~ 58 (75)
T d2h3ja1 25 QRLFSMGLLPGAALRVVRIAPLGDPIQVETRQTS 58 (75)
T ss_dssp HHHHHHTCCTTCEEEEEECCTTSCCCEEESSSSE
T ss_pred HHHHHcCCCCCCEEEEEEECCCCCCEEEEECCEE
Confidence 4678999999887666654444556776666643
No 8
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Probab=20.36 E-value=12 Score=21.11 Aligned_cols=10 Identities=10% Similarity=0.710 Sum_probs=7.6
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|+.
T Consensus 7 P~say~lf~~ 16 (73)
T d1qrva_ 7 PLSAYMLWLN 16 (73)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7788888864
No 9
>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}
Probab=19.50 E-value=29 Score=20.41 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.2
Q ss_pred HHHHHHHHhhcCCcccCCC
Q psy15830 65 NIVLALYKCQSMGLLPSHS 83 (106)
Q Consensus 65 ~l~~glyK~~~MGLLPt~~ 83 (106)
-++-++-+...|||||-+.
T Consensus 47 ~l~~aIkrAR~~gLlPy~~ 65 (70)
T d2uubr1 47 ILAKTIKRARILGLLPFTE 65 (70)
T ss_dssp HHHHHHHHHHHTTSSCSCC
T ss_pred HHHHHHHHHHHHhcccccH
Confidence 4678899999999999764
No 10
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.58 E-value=16 Score=20.36 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=7.7
Q ss_pred hhhhHHHHhc
Q psy15830 4 PMNIVIMYMA 13 (106)
Q Consensus 4 pMn~FMmyMs 13 (106)
|+|+||+|+.
T Consensus 5 P~say~~f~~ 14 (71)
T d1ckta_ 5 KMSSYAFFVQ 14 (71)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7788888874
Done!