RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15830
(106 letters)
>gnl|CDD|219016 pfam06417, DUF1077, Protein of unknown function (DUF1077). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 124
Score = 130 bits (330), Expect = 7e-41
Identities = 52/98 (53%), Positives = 74/98 (75%), Gaps = 4/98 (4%)
Query: 2 NVPMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKMIEGH----QVLGQKFI 57
++PMN+ +MYM+GNS+ IFPIMMVGML+ PIKA+ + +S+FK +E + Q+L QK +
Sbjct: 27 SLPMNLFMMYMSGNSLQIFPIMMVGMLLWNPIKAILSTNSAFKPLENNSNRSQLLLQKLV 86
Query: 58 YFIGNIVNIVLALYKCQSMGLLPSHSSDWLSFVLPQTR 95
Y +G ++ + L LYK SMGLLP+ SSDWL++ PQTR
Sbjct: 87 YVLGQLLALALGLYKLNSMGLLPTTSSDWLAWEPPQTR 124
>gnl|CDD|218784 pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI).
This family consists of several Proteobacterial
phosphonate metabolism protein (PhnI) sequences.
Bacteria that use phosphonates as a phosphorus source
must be able to break the stable carbon-phosphorus bond.
In Escherichia coli phosphonates are broken down by a
C-P lyase that has a broad substrate specificity. The
genes for phosphonate uptake and degradation in E. coli
are organised in an operon of 14 genes, named phnC to
phnP. Three gene products (PhnC, PhnD and PhnE) comprise
a binding protein-dependent phosphonate transporter,
which also transports phosphate, phosphite, and certain
phosphate esters such as phosphoserine; two gene
products (PhnF and PhnO) may have a role in gene
regulation; and nine gene products (PhnG, PhnH, PhnI,
PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably
comprise a membrane-associated C-P lyase enzyme complex.
Length = 356
Score = 29.9 bits (68), Expect = 0.19
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 27 MLIVRPIKALFTLSSSFKMIEGHQVLGQKFIY 58
M + R I S++FK I G QVLG + Y
Sbjct: 99 MRLERRI------SAAFKDIPGGQVLGPTYDY 124
>gnl|CDD|184988 PRK15028, PRK15028, cytochrome bd-II oxidase subunit 2;
Provisional.
Length = 378
Score = 26.8 bits (59), Expect = 2.7
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 4 PMNIVIMYMAGNSISIFPIMMVGMLIVRPIKALFTLSSSFKM 45
P++ + ++ + +S IM+V +LI PI L+TL S +KM
Sbjct: 320 PISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361
>gnl|CDD|226153 COG3626, PhnI, Uncharacterized enzyme of phosphonate metabolism
[Inorganic ion transport and metabolism].
Length = 367
Score = 26.3 bits (58), Expect = 3.3
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 21 PIMMVGMLIVRPIKALFTLSSSFKMIEGHQVLGQKFIY 58
P+ M + R I S+++K + G Q+LG + Y
Sbjct: 93 PLDTSKMRLERRI------SATYKDLPGGQLLGPTYDY 124
>gnl|CDD|234400 TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This
model represents the N-terminal domain or EccCa subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 661
Score = 26.1 bits (58), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 7 IVIMYMAGNSIS-----IFPIMM-VGML 28
+V+M+ +G IFP+MM V ML
Sbjct: 20 VVMMFASGGRQRNPMFLIFPLMMLVSML 47
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 26.2 bits (57), Expect = 4.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 81 SHSSDWLSFVLPQTRIEYSSGGVVYS 106
+ +SDW F+L +EY G ++S
Sbjct: 210 ARASDWTGFLLTGDLVEYGRTGEIFS 235
>gnl|CDD|100035 cd02204, PurL_repeat2, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second
repeat. FGAR-AT catalyzes the ATP-dependent conversion
of formylglycinamide ribonucleotide (FGAR) and glutamine
to formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 264
Score = 25.6 bits (57), Expect = 5.5
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 10 MYMAGNSISIFPIMMVGML-IVRPIKALFTLSSSFKMIEGHQVLGQKFIYFIG 61
+Y ++I P +++G + +V ++ ++ FK EG +Y IG
Sbjct: 99 LYNETEGVAIPPTLVIGAVGVVDDVRK--IVTLDFK-KEGDL------LYLIG 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.415
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,342,300
Number of extensions: 450636
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 48
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)