RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15830
         (106 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 4.4
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 26/84 (30%)

Query: 11  YMAGNSISIFPIMMVGML----IVRPIKAL-FTLSSSFKMIEGHQVLGQKFIYFIGNIVN 65
           Y+    IS  P+  +G++     V   K L FT       ++G     Q           
Sbjct: 230 YLLSIPIS-CPL--IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ----------G 276

Query: 66  IVLALYKCQSMGLLPSHSSDWLSF 89
           +V A+          + +  W SF
Sbjct: 277 LVTAV--------AIAETDSWESF 292


>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
           protein biosynthesis I aminoacyl-tRNA synthetase,
           ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
           4ari_A* 4as1_A*
          Length = 880

 Score = 25.2 bits (56), Expect = 5.3
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 44  KMIEGHQVLGQKFIYFIGNIVNIVLA 69
           K ++G  V  +K IY  G ++N+V+ 
Sbjct: 857 KYLDGVTV--RKVIYVPGKLLNLVVG 880


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,546,932
Number of extensions: 75618
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 3
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.3 bits)