RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15830
         (106 letters)



>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
           {Escherichia coli [TaxId: 562]}
          Length = 214

 Score = 22.9 bits (49), Expect = 9.6
 Identities = 5/29 (17%), Positives = 9/29 (31%)

Query: 15  NSISIFPIMMVGMLIVRPIKALFTLSSSF 43
                 P+  +G    +  K L  L+   
Sbjct: 159 MDNFFAPVFTMGKYYTQGDKVLMPLAIQV 187


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,247
Number of extensions: 14432
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.3 bits)