BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15831
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 12/224 (5%)
Query: 8 ERFNLALEEAKQ-VDILLAASTKSVEEIG-RDTPLLGVPLTVKESVAVKGCSNNAGRIKP 65
+R+N E+ K + L + K E + R+ PL G+P+ VK+++ V+G
Sbjct: 30 DRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKTTCASKIL 89
Query: 66 KERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPXXXXX 125
+ +A DA + L++AGA+I+ TN E M T A T NP+D R P
Sbjct: 90 ENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSG 149
Query: 126 XXXXXXXXXXXIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVG--HMPSSEDKMWNT 183
V + SD GS R PA F GV G KP+ G VS G SS D+
Sbjct: 150 GSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQ---- 205
Query: 184 YFTIGLLARYAEDLPLVLHLMIS-DREQAKSLRLLEPVIVQDIK 226
IG+ R ED+ LVL ++ D + + S ++ P +++K
Sbjct: 206 ---IGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSEEVK 246
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 116/273 (42%), Gaps = 40/273 (14%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCM 98
PL G+PLTVK+ VKG AG P + ++A VR LR+AGA++ TN E+ +
Sbjct: 64 PLHGLPLTVKDLFPVKGMPTRAGTKAPLPPL-PEEARAVRRLREAGALLFAKTNXHEIAL 122
Query: 99 NWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFTGVF 158
N TG N D R + + +D GS RIPA F GV
Sbjct: 123 GITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVV 182
Query: 159 GHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLE 218
G KPS G VS G +P S + G L R D + ++ E
Sbjct: 183 GFKPSYGRVSLEGALPLS-----RSTDHAGPLTRSVRDAHFLTEILAG-----------E 226
Query: 219 PVIVQDIK--VFYMEDDGSCTLTDGVDLDIKEG-----IRKAVHH-LEYKQGIKAQ--KV 268
+ ++ ++ VF GV LD EG +RKA LE ++A+ +V
Sbjct: 227 SIPLEGVQNPVF------------GVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREV 274
Query: 269 NIDLEDVFELVSMVLLKMNGINCPYQEDDEHPE 301
++ LE V+E+ + L++ + EHPE
Sbjct: 275 SLPLEGVYEVYTR-LVRYEAARIHEKALKEHPE 306
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 85/190 (44%), Gaps = 23/190 (12%)
Query: 14 LEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDD 73
LEEA+ VD L PL G+ + VK+++A +G AG + + +
Sbjct: 46 LEEAEAVDPGL--------------PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYE 91
Query: 74 AETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXX 133
A V L+ GA++L TN E M T + A T NP+D R P
Sbjct: 92 ATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAA 151
Query: 134 XXXIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHM--PSSEDKMWNTYFTIGLLA 191
+ + SD GS R PA F GV+G KP+ G VS G + SS D+ IG +A
Sbjct: 152 DLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQ-------IGPMA 204
Query: 192 RYAEDLPLVL 201
R DL L++
Sbjct: 205 RSVRDLALLM 214
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 18/207 (8%)
Query: 11 NLALEEAKQVDILLAASTK-----SVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKP 65
L+LE K++D + A SVE+ G+ G+P+ +K+++ G
Sbjct: 27 QLSLETIKRLDPHVKAFISVRENVSVEKKGK---FWGIPVAIKDNILTLGMRTTCASRIL 83
Query: 66 KERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPXXXXX 125
+ + DA V+ +++AG +++ N E M T A T NP+D R P
Sbjct: 84 ENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSG 143
Query: 126 XXXXXXXXXXXIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVG--HMPSSEDKMWNT 183
+ + SD GS R PA GV G+KP+ G VS G SS D+
Sbjct: 144 GSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQ---- 199
Query: 184 YFTIGLLARYAEDLPLVLHLMISDREQ 210
IG + + D +++ + IS R++
Sbjct: 200 ---IGPITKTVRDAAILMEI-ISGRDE 222
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 93/234 (39%), Gaps = 22/234 (9%)
Query: 37 DTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPEL 96
D L G + +K++V V G G + + DA V L AGA + +L
Sbjct: 85 DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDL 144
Query: 97 CMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFTG 156
C + +F A+G NP+D +R + D GS RIPA F G
Sbjct: 145 CFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCG 204
Query: 157 VFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMI----SDREQAK 212
V GHKP+ G V G P + T +G + R D L+L ++ +D QA
Sbjct: 205 VVGHKPTFGLVPYTGAFP-----IERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259
Query: 213 SLRLLEPVIVQDIKVFYMEDDGSCTLTDGVDLDI-KEGIRKAVHHLEYKQGIKA 265
S+ + + D V DG+ + I +EG AV E ++A
Sbjct: 260 SVEAGDYLSTLDSDV------------DGLRIGIVREGFGHAVSQPEVDDAVRA 301
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 93/234 (39%), Gaps = 22/234 (9%)
Query: 37 DTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPEL 96
D L G + +K++V V G G + + DA V L AGA + +L
Sbjct: 85 DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDL 144
Query: 97 CMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFTG 156
C + +F A+G NP+D +R + D G+ RIPA F G
Sbjct: 145 CFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFCG 204
Query: 157 VFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMI----SDREQAK 212
V GHKP+ G V G P + T +G + R D L+L ++ +D QA
Sbjct: 205 VVGHKPTFGLVPYTGAFP-----IERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259
Query: 213 SLRLLEPVIVQDIKVFYMEDDGSCTLTDGVDLDI-KEGIRKAVHHLEYKQGIKA 265
S+ + + D V DG+ + I +EG AV E ++A
Sbjct: 260 SVEAGDYLSTLDSDV------------DGLRIGIVREGFGHAVSQPEVDDAVRA 301
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCM 98
PL G+PL +K+++ + +AG + + DDA VR LR AGA++L TN E
Sbjct: 77 PLHGIPLLLKDNINAAPMATSAGSLA-LQGFRPDDAYLVRRLRDAGAVVLGKTNLSE--- 132
Query: 99 NWETF---------NKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCR 149
W F + G T NPY +P V + ++ GS
Sbjct: 133 -WANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIV 191
Query: 150 IPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDRE 209
PA GV G KP+ G VS G +P S + T G +AR D VL I+ R+
Sbjct: 192 CPAAINGVVGLKPTVGLVSRDGIIPISFSQD-----TAGPMARSVADAAAVL-TAIAGRD 245
Query: 210 QA 211
A
Sbjct: 246 DA 247
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 76/173 (43%), Gaps = 5/173 (2%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAGRIKPKERI---ATDDAETVRLLRQAGAIILCVTNTPE 95
P GVP +K+ V N IK + A DA V+ +R AG ++L TNTPE
Sbjct: 63 PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122
Query: 96 LCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFT 155
+ T +A G T NP++ R+ V +D AGS RIPA
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVC 182
Query: 156 GVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDR 208
GV G KP+ G +S G + + D + GL AR D+ +L ++ R
Sbjct: 183 GVVGLKPTRGRISP-GPLVTDSDNVAGAAHE-GLFARSVRDIAALLDVVSGHR 233
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 5/173 (2%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAGRIKPKERI---ATDDAETVRLLRQAGAIILCVTNTPE 95
P GVP +K+ V N IK + A DA V+ +R AG ++L TNTPE
Sbjct: 63 PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122
Query: 96 LCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFT 155
+ T +A G T NP++ R+ V +D AG+ RIPA
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182
Query: 156 GVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDR 208
GV G KP+ G +S G + + D + GL AR D+ +L ++ R
Sbjct: 183 GVVGLKPTRGRISP-GPLVTDSDNVAGAAHE-GLFARSVRDIAALLDVVSGHR 233
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 18/207 (8%)
Query: 11 NLALEEAKQVDILLAASTK-----SVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKP 65
L+LE K++D + A SVE+ G+ G+P+ +K+++ G
Sbjct: 28 QLSLETIKRLDPHVKAFISVRENVSVEKKGK---FWGIPVAIKDNILTLGXRTTCASRIL 84
Query: 66 KERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPXXXXX 125
+ + DA V+ ++AG +++ N E T A T NP+D R P
Sbjct: 85 ENYESVFDATVVKKXKEAGFVVVGKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSG 144
Query: 126 XXXXXXXXXXXIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVG--HMPSSEDKMWNT 183
+ + SD GS R PA GV G+KP+ G VS G SS D+
Sbjct: 145 GSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQ---- 200
Query: 184 YFTIGLLARYAEDLPLVLHLMISDREQ 210
IG + + D +L +IS R++
Sbjct: 201 ---IGPITKTVRD-AAILXEIISGRDE 223
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 104/253 (41%), Gaps = 22/253 (8%)
Query: 13 ALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATD 72
A+++A+++D L A D L G+P+ +K+++ G + +
Sbjct: 51 AIKKAQELDELQAKDQ-------MDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY 103
Query: 73 DAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXX 132
++ + L + A+++ N E M T T NP+D + P
Sbjct: 104 ESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVA 163
Query: 133 XXXXIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVG--HMPSSEDKMWNTYFTIGLL 190
+ + SD GS R PA + GV G KP+ G VS G SS D+ IG L
Sbjct: 164 AGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQ-------IGPL 216
Query: 191 ARYAEDLPLVLHLM----ISDREQAKSLRL-LEPVIVQDIKVFYMEDDGSCTLTDGVDLD 245
R +D +VL + ++D A + I +DIK + L +GV D
Sbjct: 217 TRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEY-LGEGVADD 275
Query: 246 IKEGIRKAVHHLE 258
+KE ++ AV L+
Sbjct: 276 VKEAVQNAVETLK 288
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%)
Query: 36 RDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPE 95
R L GVP+++KE + KG + G + + D V++L+ GA+ TN P+
Sbjct: 94 RQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 153
Query: 96 LCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFT 155
++++ N G T NP+ + ++P +G+ +DI GS R P+ F
Sbjct: 154 SMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFC 213
Query: 156 GVFGHKPSPGFVSNVG 171
G+ G KP+ +S G
Sbjct: 214 GICGLKPTGNRLSKSG 229
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%)
Query: 36 RDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPE 95
R L GVP+++KE + KG + G + + D V++L+ GA+ TN P+
Sbjct: 138 RQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 197
Query: 96 LCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFT 155
+++ N G T NP+ + ++P +G+ +DI GS R P+ F
Sbjct: 198 SMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFC 257
Query: 156 GVFGHKPSPGFVSNVG 171
G+ G KP+ +S G
Sbjct: 258 GICGLKPTGNRLSKSG 273
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%)
Query: 36 RDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPE 95
R L GVP+++KE + KG + G + + D V++L+ GA+ TN P+
Sbjct: 100 RQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 159
Query: 96 LCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFT 155
+++ N G T NP+ + ++P +G+ +DI GS R P+ F
Sbjct: 160 SMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFC 219
Query: 156 GVFGHKPSPGFVSNVG 171
G+ G KP+ +S G
Sbjct: 220 GICGLKPTGNRLSKSG 235
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%)
Query: 36 RDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPE 95
R L GVP+++KE + KG + G + + D V++L+ GA+ TN P+
Sbjct: 120 RQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 179
Query: 96 LCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFT 155
++++ N G T NP+ + ++P +G+ +DI GS R P+ F
Sbjct: 180 SMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFC 239
Query: 156 GVFGHKPSPGFVSNVG 171
G+ G KP+ +S G
Sbjct: 240 GICGLKPTGNRLSKSG 255
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%)
Query: 31 VEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCV 90
+ + R L GVP+++KE + KG + G + + D V++L+ GA+
Sbjct: 96 LSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVH 155
Query: 91 TNTPELCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRI 150
TN P+ ++++ N G T NP+ + ++P +G+ +DI GS R
Sbjct: 156 TNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRF 215
Query: 151 PAMFTGVFGHKPSPGFVSNVG 171
P+ F G+ G KP+ +S G
Sbjct: 216 PSAFCGICGLKPTGNRLSKSG 236
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%)
Query: 36 RDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPE 95
R L GVP+++KE + KG + G + + D V++L+ GA+ TN P+
Sbjct: 138 RQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 197
Query: 96 LCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFT 155
++++ N G T NP+ + ++P +G+ +DI GS R P+ F
Sbjct: 198 SMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFC 257
Query: 156 GVFGHKPSPGFVSNVG 171
G+ G KP+ +S G
Sbjct: 258 GICGLKPTGNRLSKSG 273
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%)
Query: 31 VEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCV 90
+ + R L GVP+++KE + KG + G + + D V++L+ GA+
Sbjct: 119 LSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVH 178
Query: 91 TNTPELCMNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRI 150
TN P+ +++ N G T NP+ + ++P +G+ +DI GS R
Sbjct: 179 TNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRF 238
Query: 151 PAMFTGVFGHKPSPGFVSNVG 171
P+ F G+ G KP+ +S G
Sbjct: 239 PSAFCGICGLKPTGNRLSKSG 259
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAGRIKPKERIATD-DAETVRLLRQAGAIILCVTNTPELC 97
PL GVP VK+++ V G +A P D DA V LR AGAI+L TN +
Sbjct: 94 PLYGVPFAVKDNIDVAGLPCSAA--CPAFTYEPDRDATVVARLRAAGAIVLGKTNLDQFA 151
Query: 98 MNWETFNKATGTTNNPYDTRRTPXXXXXXXXXXXXXXXXIVGVASDIAGSCRIPAMFTGV 157
G +D + +D AGS R+PA F +
Sbjct: 152 TGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAFNNL 211
Query: 158 FGHKPSPGFVSNVGHMPS 175
G KP+ G +S G +P+
Sbjct: 212 VGVKPTKGLLSTSGVVPA 229
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 171 GHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMIS-----DREQAKSLRLLEPVIVQDI 225
GH PS E+ M N++ +IG +P++ HL + E A+S+ ++
Sbjct: 408 GHKPSLEEYMKNSWISIG-------GIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASC 460
Query: 226 KVFYMEDDGSCTL 238
+ + DD +L
Sbjct: 461 TILRLADDMGTSL 473
>pdb|3L4R|A Chain A, Crystal Structure Of The Dog Lipocalin Allergen Can F 2
And Implications For Cross-Reactivity To The Cat
Allergen Fel D 4
Length = 170
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 183 TYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPVIVQDI-----KVFYMEDDGSC 236
+Y + ++ +Y +D LV HLM+ D + + + +DI ++ + DD C
Sbjct: 99 SYLILYMINQYNDDTSLVAHLMVRDLSRQQDFLPAFESVCEDIGLHKDQIVVLSDDDRC 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,637,031
Number of Sequences: 62578
Number of extensions: 329269
Number of successful extensions: 667
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 21
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)