Query psy15831
Match_columns 304
No_of_seqs 152 out of 1080
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:27:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 4.4E-73 1.5E-77 558.2 28.1 259 2-279 40-309 (485)
2 2dc0_A Probable amidase; struc 100.0 1.7E-71 5.8E-76 540.0 24.5 243 2-271 34-277 (434)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 5.4E-71 1.8E-75 542.1 25.3 254 2-279 39-302 (478)
4 1m22_A Peptide amidase, PAM; e 100.0 4.7E-71 1.6E-75 546.0 23.5 248 1-270 47-312 (503)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 6.4E-70 2.2E-74 533.4 23.4 251 2-279 35-294 (471)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 2.9E-69 9.9E-74 532.1 22.1 243 2-270 42-300 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 8.4E-69 2.9E-73 526.7 22.1 231 38-279 57-296 (476)
8 3ppm_A Fatty-acid amide hydrol 100.0 2.2E-68 7.6E-73 531.9 22.1 267 2-289 105-379 (573)
9 3a1k_A Amidase; AS family enzy 100.0 1.3E-66 4.4E-71 515.7 21.6 233 37-279 85-328 (521)
10 1o9p_A Malonamidase E2; malona 100.0 6.6E-66 2.3E-70 497.9 21.4 212 37-270 51-262 (414)
11 2hw2_A Rifampin ADP-ribosyl tr 23.3 84 0.0029 24.8 3.9 39 221-266 102-141 (143)
12 3n5l_A Binding protein compone 22.0 1.3E+02 0.0045 26.3 5.7 49 222-278 3-52 (310)
13 2i0f_A 6,7-dimethyl-8-ribityll 21.1 1.5E+02 0.0052 23.8 5.3 73 224-304 12-93 (157)
14 3p7i_A PHND, subunit of alkylp 21.1 1.3E+02 0.0045 26.6 5.5 51 221-279 12-63 (321)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=4.4e-73 Score=558.19 Aligned_cols=259 Identities=25% Similarity=0.369 Sum_probs=235.6
Q ss_pred eeEEEecCHHHHHHHHHHHhHHH-HcCCCcccccCCCCCcccceEEeecCCCCCCccCCCCCCCCCCCCCCcchHHHHHH
Q psy15831 2 LNAVVDERFNLALEEAKQVDILL-AASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLL 80 (304)
Q Consensus 2 lna~~~~~~~~al~~A~~~d~~~-~~~~~~~~~~~~~~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~da~~V~~L 80 (304)
+||+++.++|+|+++|+++|+++ ++|+ . +|||||||+|||+|+++|++||+||..+.++++.+|+++|++|
T Consensus 40 lna~~~~~~~~Al~~A~~~d~~~~~~g~-------~-gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rL 111 (485)
T 3ip4_A 40 IKSFLALDKENAIKKAQELDELQAKDQM-------D-GKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKL 111 (485)
T ss_dssp HCCEEEECHHHHHHHHHHHHHHHHTTCC-------C-STTTTCEEEEETTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHH
T ss_pred ceEEEEECHHHHHHHHHHHHHHHHhcCC-------C-CCcCCCEEEEEcCcccCCCccCCCChhhcCCCCCCCcHHHHHH
Confidence 79999999999999999999988 6664 3 8999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCceee
Q psy15831 81 RQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGH 160 (304)
Q Consensus 81 ~~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~gl 160 (304)
+++|||++||||||||+++.++.|++||+|+||||+.|+|||||||||++||+|++++++|||+|||||+||+|||||||
T Consensus 112 r~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~Gl 191 (485)
T 3ip4_A 112 HKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGM 191 (485)
T ss_dssp HHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEE
T ss_pred HHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCccCCCCceeeccccCCcchHHHHHHHHcCCCccccccccCCc---------cccCCcEEEEEC
Q psy15831 161 KPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEP---------VIVQDIKVFYME 231 (304)
Q Consensus 161 kPT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~Dl~~~~~~l~~~~~~~~~~~~~~~---------~~~~~lrig~~~ 231 (304)
|||+|+||+.|++|.++ ++|++|||+|||+|+++++++|.+.| ..++.....+ ...+++||||+.
T Consensus 192 KPT~Grvs~~G~~p~~~-----sld~~Gp~aRsv~D~a~~l~vl~g~d-~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~ 265 (485)
T 3ip4_A 192 KPTYGRVSRFGLVAFAS-----SLDQIGPLTRNVKDNAIVLEAISGAD-VNDSTSAPVDDVDFTSEIGKDIKGLKVALPK 265 (485)
T ss_dssp ECCTTSBCCTTBCCSCT-----TTCCEEEEESSHHHHHHHHHHHBSCC-TTCTTSCCCCCCCCSTTTTCCCTTCEEEEEG
T ss_pred cCCCCcccCCCCCCccc-----ccceeccccCCHHHHHHHHHHhcCCC-cccccccccCccchhhhhccCccCcEEEEEC
Confidence 99999999999999987 99999999999999999999999963 3333222111 146789999998
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC-ChHHHHHHH
Q psy15831 232 DDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI-DLEDVFELV 279 (304)
Q Consensus 232 ~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~-~~~~~~~~~ 279 (304)
+. +...++|+++++++++++.|++ +||+|+++++ .+++...+|
T Consensus 266 ~~----~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~~ 309 (485)
T 3ip4_A 266 EY----LGEGVADDVKEAVQNAVETLKS-LGAVVEEVSLPNTKFGIPSY 309 (485)
T ss_dssp GG----GSTTSCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHH
T ss_pred Cc----ccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCcHHHHHHHH
Confidence 63 2356899999999999999999 5999999998 666666555
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-71 Score=539.95 Aligned_cols=243 Identities=31% Similarity=0.394 Sum_probs=225.6
Q ss_pred eeEEEecCHHHHHHHHHHHhHHHHcCCCcccccCCCCCcccceEEeecCCCCCCccCCCCCCCCCCCCC-CcchHHHHHH
Q psy15831 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIA-TDDAETVRLL 80 (304)
Q Consensus 2 lna~~~~~~~~al~~A~~~d~~~~~~~~~~~~~~~~~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~-~~da~~V~~L 80 (304)
+||+++.++|+|+++|+++|+++++++. .+|||||||+|||+|+++|++||+||..+ +++ .+|+++|++|
T Consensus 34 lna~~~~~~~~Al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~--~~~a~~dA~vV~rL 104 (434)
T 2dc0_A 34 RNALAYLDEEAARKEALALTEELRRGQV-------RGPLHGLPLTVKDLFPVKGMPTRAGTKAP--LPPLPEEARAVRRL 104 (434)
T ss_dssp GCCEEEECHHHHHHHHHHHHHHHHTTCC-------CSTTTTCEEEEETTSCBTTBCCCTTCSSC--CCCCCSSCHHHHHH
T ss_pred CcEEEEcCHHHHHHHHHHHHHHHhcCCC-------CCCcCCeeEEEEeccccCCcccCCCCccc--CCCCCCCHHHHHHH
Confidence 6999999999999999999999988753 58999999999999999999999999999 666 8999999999
Q ss_pred HHcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCceee
Q psy15831 81 RQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGH 160 (304)
Q Consensus 81 ~~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~gl 160 (304)
+++|||++||||||||+++..++|++||+|+||||+.++|||||||||++||+|++++++|||+|||||+||+|||+|||
T Consensus 105 ~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~Gl 184 (434)
T 2dc0_A 105 REAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGF 184 (434)
T ss_dssp HHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEE
T ss_pred HHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCccCCCCceeeccccCCcchHHHHHHHHcCCCccccccccCCccccCCcEEEEECCCCCCcCCC
Q psy15831 161 KPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPVIVQDIKVFYMEDDGSCTLTD 240 (304)
Q Consensus 161 kPT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~Dl~~~~~~l~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~ 240 (304)
|||+|+||+.|++|.++ ++|++|||+|||+|+++++++|.+ +..+ +...+++||||+.+++ +.
T Consensus 185 KPT~G~vs~~g~~~~~~-----s~d~~Gp~arsv~D~a~~l~~l~g--~~~d------~~~~~~lrig~~~~~~----~~ 247 (434)
T 2dc0_A 185 KPSYGRVSLEGALPLSR-----STDHAGPLTRSVRDAHFLTEILAG--ESIP------LEGVQNPVFGVPLDFL----EG 247 (434)
T ss_dssp ECSTTSSCCTTSCCSCT-----TTCCEEEEESSHHHHHHHHHHHHT--SCCC------CCCCCSCEEEECHHHH----TT
T ss_pred ECCCCCCCCCCCCCCCC-----ccCeeCcccCCHHHHHHHHHHHhC--CCCC------cccccCCEEEEECccc----cC
Confidence 99999999999999988 999999999999999999999998 3111 1135789999987642 45
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEecCC
Q psy15831 241 GVDLDIKEGIRKAVHHLEYKQGIKAQKVNID 271 (304)
Q Consensus 241 ~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~~ 271 (304)
.++|+++++++++++.|++ +||+|+++++.
T Consensus 248 ~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p 277 (434)
T 2dc0_A 248 RLGVEVRKAFTRLLEDLPA-LRAEVREVSLP 277 (434)
T ss_dssp CSCHHHHHHHHHHHHHTTT-TTCEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEeCCC
Confidence 6899999999999999999 59999998763
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=5.4e-71 Score=542.06 Aligned_cols=254 Identities=30% Similarity=0.436 Sum_probs=231.1
Q ss_pred eeEEEecCHHHHHHHHHHHhHHHHcCCCcccccCCCCCcccceEEeecCCCCCCccCCCCCCCCCCCCCCcchHHHHHHH
Q psy15831 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLR 81 (304)
Q Consensus 2 lna~~~~~~~~al~~A~~~d~~~~~~~~~~~~~~~~~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~da~~V~~L~ 81 (304)
+||+++.++|+|+++|+++|++ .+|||||||+|||+|+++|++||+||..+.++++.+|+++|++|+
T Consensus 39 lna~~~~~~~~Al~~A~~~d~~-------------~gpL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~ 105 (478)
T 3h0l_A 39 VKAYITPLYGKALKQAESLKER-------------ELPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLK 105 (478)
T ss_dssp HCCEEEECHHHHHHHHHTCCCT-------------TSTTTTCEEEEETTBCCTTSBCCTTCGGGTTCBCSSCCHHHHHHH
T ss_pred CcEEEEeChHHHHHHHHhhchh-------------cCCcCCceEEEEcCccCCCCCcCCcCHhhcCCCCCCCHHHHHHHH
Confidence 7999999999999999988864 289999999999999999999999999999999999999999999
Q ss_pred HcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCceeec
Q psy15831 82 QAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHK 161 (304)
Q Consensus 82 ~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~glk 161 (304)
++|||++||||||||+++.++.|+.||+|+||||+.++|||||||||++||+|++++++|||+|||||+||+||||||||
T Consensus 106 ~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlK 185 (478)
T 3h0l_A 106 KAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIK 185 (478)
T ss_dssp HTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEE
T ss_pred HCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccCCCCceeeccccCCcchHHHHHHHHcCCCccccccccCCc---------cccCCcEEEEECC
Q psy15831 162 PSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEP---------VIVQDIKVFYMED 232 (304)
Q Consensus 162 PT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~Dl~~~~~~l~~~~~~~~~~~~~~~---------~~~~~lrig~~~~ 232 (304)
||+|+||+.|++|.++ ++|++|||+|||+|+++++++|.+. +..++.....+ ...+++||||+.+
T Consensus 186 PT~G~v~~~g~~~~~~-----~~d~~Gp~arsv~D~a~~l~vl~g~-d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~ 259 (478)
T 3h0l_A 186 PTYGRVSRYGLVAFAS-----SLDQIGVFGRRTEDVALVLEVISGW-DEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKE 259 (478)
T ss_dssp CCTTSBCCTTBCCSCT-----TTCCEEEEESSHHHHHHHHHHHBSC-CTTCTTSCCCCCCCHHHHTTCCCTTCEEEEEGG
T ss_pred CCCCcccCCCCCCCcc-----CCCeecceeCCHHHHHHHHHHhcCC-CcccccccccCccchhhhhccCCCCCEEEEECC
Confidence 9999999999999987 9999999999999999999999996 33333322211 1467899999986
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC-ChHHHHHHH
Q psy15831 233 DGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI-DLEDVFELV 279 (304)
Q Consensus 233 ~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~-~~~~~~~~~ 279 (304)
. +...++|+++++++++++.|++ +||+|+++++ .+++....|
T Consensus 260 ~----~~~~~~p~v~~a~~~a~~~L~~-~G~~v~~v~~p~~~~~~~~~ 302 (478)
T 3h0l_A 260 F----FEYELQPQVKEAFENFIKELEK-EGFEIKEVSLPHVKYSIPTY 302 (478)
T ss_dssp G----GGSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHH
T ss_pred c----ccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCcHHHHHHHH
Confidence 3 2356899999999999999999 5999999998 666665554
No 4
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=4.7e-71 Score=545.98 Aligned_cols=248 Identities=29% Similarity=0.368 Sum_probs=226.0
Q ss_pred CeeEEEecCHHHHHHHHHHHhHHHHcCCCcccccCCCCCcccceEEeecCCCCCCccCCCCCCCCCCCCCCcchHHHHHH
Q psy15831 1 MLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLL 80 (304)
Q Consensus 1 ~lna~~~~~~~~al~~A~~~d~~~~~~~~~~~~~~~~~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~da~~V~~L 80 (304)
.+||+++.++| |+++|+++|+++++++. .+|||||||+|||+|+++|++||+||..+.++++ +|+++|++|
T Consensus 47 ~lna~~~~~~~-Al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~~~~-~dA~vV~rL 117 (503)
T 1m22_A 47 RLRAVIELNPD-ALKEAAERDRERRDGRL-------RGPLHGIPLLLKDNINAAPMATSAGSLALQGFRP-DDAYLVRRL 117 (503)
T ss_dssp CCCCEEEECTT-HHHHHHHHHHHHHTTCC-------CSTTTTCEEEEETTBCCTTSCCCTTCGGGTTCCC-CCCHHHHHH
T ss_pred ceEEEEECCHH-HHHHHHHHHHHHHcCCC-------CCCcCCceeEeecccccCCCCcCCCCHhhcCCCC-CCcHHHHHH
Confidence 37999999988 99999999999888752 5999999999999999999999999999999999 999999999
Q ss_pred HHcCCeEEEEcCcCcccc-----ccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCcceeEeccCCCccccccccc
Q psy15831 81 RQAGAIILCVTNTPELCM-----NWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFT 155 (304)
Q Consensus 81 ~~aGai~igkt~~~e~~~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~ 155 (304)
+++|||++||||||||++ +.+++|++||+|+||||+.|+|||||||||++||+|++++++|||||||||+||+||
T Consensus 118 r~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~c 197 (503)
T 1m22_A 118 RDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAIN 197 (503)
T ss_dssp HHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHT
T ss_pred HHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHh
Confidence 999999999999999998 778999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCCCCCCCCCCCCccCCCCceeeccccCCcchHHHHHHHHcCCCccccccccCCc-------------ccc
Q psy15831 156 GVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEP-------------VIV 222 (304)
Q Consensus 156 Gv~glkPT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~Dl~~~~~~l~~~~~~~~~~~~~~~-------------~~~ 222 (304)
||||||||+|+||+.|++|.++ ++|++|||+|||+|+++++++|.+.|+ .++.....+ ...
T Consensus 198 GvvGlKPT~Grvs~~G~~p~~~-----sld~~Gp~arsv~D~a~~l~vl~g~d~-~d~~~~~~~~~~~~~~~~~~~~~~~ 271 (503)
T 1m22_A 198 GVVGLKPTVGLVSRDGIIPISF-----SQDTAGPMARSVADAAAVLTAIAGRDD-ADPATATMPGRAVYDYTARLDPQGL 271 (503)
T ss_dssp TSEEEECCTTSSCCTTBCCSCT-----TTCEEEEEESSHHHHHHHHHHHCCCCT-TCGGGGGCTTCCCCCGGGGCCTTTT
T ss_pred CceEEECCCCCcCCCCcCCccC-----CCCeeCcccCCHHHHHHHHHHHcCCCC-CCccccccccccccchhhhccccCC
Confidence 9999999999999999999987 899999999999999999999999632 232221111 135
Q ss_pred CCcEEEEECCCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy15831 223 QDIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI 270 (304)
Q Consensus 223 ~~lrig~~~~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~ 270 (304)
+++||||+.++ + .++++++++++++++.|++ +||+|+++++
T Consensus 272 ~~lrIgv~~~~-----~-~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~ 312 (503)
T 1m22_A 272 RGKRIGLLQTP-----L-LKYRGMPPLIEQAATELRR-AGAVVVPVEL 312 (503)
T ss_dssp TTCEEEEECSG-----G-GGSTTHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred CCCEEEEECcc-----c-cCCHHHHHHHHHHHHHHHH-cCCEEEEeCC
Confidence 78999999863 2 3799999999999999999 5999999987
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=6.4e-70 Score=533.37 Aligned_cols=251 Identities=30% Similarity=0.423 Sum_probs=228.1
Q ss_pred eeEEEecCHHHHHHHHHHHhHHHHcCCCcccccCCCCCcccceEEeecCCCCCCccCCCCCCCCCCCCCCcchHHHHHHH
Q psy15831 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLR 81 (304)
Q Consensus 2 lna~~~~~~~~al~~A~~~d~~~~~~~~~~~~~~~~~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~da~~V~~L~ 81 (304)
+||+++.+ |+|+++|+++|++ .|||||||+|||+|+++|++||+||..+.++++.+|+++|++|+
T Consensus 35 lna~~~~~-~~al~~A~~~d~~--------------~pL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~ 99 (471)
T 3kfu_E 35 LGAFLSLN-ERLLEEAEAVDPG--------------LPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLK 99 (471)
T ss_dssp HCCEEEEC-CTTTHHHHTSCCS--------------CTTTTCEEEEETTBCCTTSCCCTTCSTTTTCCCSSCCHHHHHHH
T ss_pred ccEEEEeC-HHHHHHHHhcCcc--------------CCcCCCeEEEECCcccCCccccccCHhHcCCCCCCChHHHHHHH
Confidence 79999999 9999999887752 39999999999999999999999999999999999999999999
Q ss_pred HcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCceeec
Q psy15831 82 QAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHK 161 (304)
Q Consensus 82 ~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~glk 161 (304)
++|||++||||||||+++.++.|+.||+|+||||+.++|||||||||++||+|++++++|||+|||||+||+||||||||
T Consensus 100 ~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlK 179 (471)
T 3kfu_E 100 ALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLK 179 (471)
T ss_dssp TTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEE
T ss_pred HCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCccccChhhcCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccCCCCceeeccccCCcchHHHHHHHHcCCCccccccccCCc--------cccCCcEEEEECCC
Q psy15831 162 PSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEP--------VIVQDIKVFYMEDD 233 (304)
Q Consensus 162 PT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~Dl~~~~~~l~~~~~~~~~~~~~~~--------~~~~~lrig~~~~~ 233 (304)
||+|+||+.|++|.++ ++|++|||+|||+|+++++++|.+.| ..++.....+ ...+++||||+.++
T Consensus 180 PT~G~v~~~g~~~~~~-----~~d~~Gp~arsv~D~a~~~~~l~g~d-~~d~~~~~~~~~~~~~~~~~~~~lrIgv~~~~ 253 (471)
T 3kfu_E 180 PTYGRVSRFGLIAYAS-----SLDQIGPMARSVRDLALLMDAAAGPD-PLDATSLDLPPRFQEALEGPLPPLRLGVVREA 253 (471)
T ss_dssp CCTTSSCCTTBCCSCT-----TTCEEEEEESSHHHHHHHHHHHCSCC-TTCTTCCCCCCCTTCCSCCCCSSCEEEEEGGG
T ss_pred CCCCCccCCCCCCccc-----ccCeecceeCCHHHHHHHHHHhcCCC-cccccccCCCcchhhhhccCCCCCEEEEECCc
Confidence 9999999999999987 99999999999999999999999963 3333222111 14678999999873
Q ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC-ChHHHHHHH
Q psy15831 234 GSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI-DLEDVFELV 279 (304)
Q Consensus 234 g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~-~~~~~~~~~ 279 (304)
...++|+++++++++++.|++ +||+|+++++ .+++.+..|
T Consensus 254 -----~~~~~p~v~~a~~~a~~~L~~-~G~~v~~v~~p~~~~~~~~~ 294 (471)
T 3kfu_E 254 -----LAGNSPGVERALEEALKVFRE-LGLSVREVSWPSLPQALAAY 294 (471)
T ss_dssp -----TTTCCHHHHHHHHHHHHHHHT-TTCEEEEECCTTGGGHHHHH
T ss_pred -----cCCCCHHHHHHHHHHHHHHHH-cCCeeeeecCccHHHHHHHH
Confidence 257899999999999999999 5999999998 666666655
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=2.9e-69 Score=532.10 Aligned_cols=243 Identities=29% Similarity=0.346 Sum_probs=219.7
Q ss_pred eeEEEecCHHHHHHHHHHHhHHHHcCCCcccccCCCCCcccceEEeecCC-CCCCccCCCCCCCCC--CCCCCcchHHHH
Q psy15831 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESV-AVKGCSNNAGRIKPK--ERIATDDAETVR 78 (304)
Q Consensus 2 lna~~~~~~~~al~~A~~~d~~~~~~~~~~~~~~~~~pL~GiPi~vKD~~-~v~g~~tt~Gs~~~~--~~~~~~da~~V~ 78 (304)
+||+++.++|+|+++|++ | . +|||||||+|||+| +++|++||+||..+. ++++.+|+++|+
T Consensus 42 lna~~~~~~~~Al~~A~~-d------~---------gpL~GvPi~vKD~~~~v~G~~Tt~Gs~~~~~~~~~~~~dA~vV~ 105 (493)
T 3a2q_A 42 INAVIIPLFEKARRESEL-A------S---------GPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQ 105 (493)
T ss_dssp HCCEEEECHHHHHHHHHH-C------C---------STTTTCEEEEESSSSCCTTSBCCTTCHHHHHHTCBCSSCCHHHH
T ss_pred cCeEEecCHHHHHHHhhh-c------C---------CCcCCcEEEEecCCcCcCCCcccccChhhhhcCCCCCCCHHHHH
Confidence 799999999999999998 7 1 79999999999999 999999999999999 999999999999
Q ss_pred HHHHcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCce
Q psy15831 79 LLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVF 158 (304)
Q Consensus 79 ~L~~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~ 158 (304)
||++||||++||||||||+++.+++|++||+|+||||+.|+|||||||||++||+|++++++|||+|||||+||+|||||
T Consensus 106 rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~ 185 (493)
T 3a2q_A 106 RMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVV 185 (493)
T ss_dssp HHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSE
T ss_pred HHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCC--C-CCCCccCCCCceeeccccCCcchHHHHHHHHcCCCccccccccCCc---------cccCCcE
Q psy15831 159 GHKPSPGFVSNVGH--M-PSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEP---------VIVQDIK 226 (304)
Q Consensus 159 glkPT~g~vs~~G~--~-p~~~~~~~~~~~~~G~~arsv~Dl~~~~~~l~~~~~~~~~~~~~~~---------~~~~~lr 226 (304)
|||||+|+||+.|+ . +.++ ++|++|||+|||+|+++++++|.+.| ..++.....+ ...+++|
T Consensus 186 GlKPT~Grvs~~g~~~~~~~~~-----sld~~Gp~arsv~D~a~~l~~l~g~d-~~d~~~~~~p~~~~~~~~~~~~~~lr 259 (493)
T 3a2q_A 186 GLKPTRGRISPGPLVTDSDNVA-----GAAHEGLFARSVRDIAALLDVVSGHR-PGDTFCAPTASRPYAQGISENPGSLR 259 (493)
T ss_dssp EEECSTTSBCCCSSCCHHHHHH-----TTCEEEEEESSHHHHHHHHHHHBSCC-TTCSCCCCCCSSCHHHHTTSCCCSCE
T ss_pred eEEcCCCccCCCCCcccccccc-----cCceecCccCCHHHHHHHHHHHcCCC-CCCcccccCCCcchhhhcccCCCCCE
Confidence 99999999999887 4 5555 89999999999999999999999963 2233222111 1357899
Q ss_pred EEEECCCCCCcC-CCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy15831 227 VFYMEDDGSCTL-TDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI 270 (304)
Q Consensus 227 ig~~~~~g~~~~-~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~ 270 (304)
|||+.+++ + ...++|+++++++++++.|++ +||+|+++++
T Consensus 260 Igv~~~~~---~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~ 300 (493)
T 3a2q_A 260 VGVLTHNP---VGDFALDPECAAAARGAAAALAA-LGHDVNDAYP 300 (493)
T ss_dssp EEECCSCT---TCSSCCCHHHHHHHHHHHHHHHH-TTCEEEECCC
T ss_pred EEEECCcc---ccCCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCC
Confidence 99998742 1 346899999999999999999 5999999886
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=8.4e-69 Score=526.74 Aligned_cols=231 Identities=26% Similarity=0.405 Sum_probs=209.3
Q ss_pred CCcccceEEeecCCCCCCccCCCCCCCCCCCCCCcchHHHHHHHHcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCCC
Q psy15831 38 TPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTR 117 (304)
Q Consensus 38 ~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~da~~V~~L~~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~~ 117 (304)
+|||||||+|||+|+++|++||+||..+.++++.+|+++|+||++||||++||||||||+++.++.|++||+|+||||+.
T Consensus 57 gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~ 136 (476)
T 2gi3_A 57 GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLE 136 (476)
T ss_dssp STTTTCEEEEETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT
T ss_pred CCcCCceEEEEcCccCCCCccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCceeeccCCCCCCCCCCCCCCCccCCCCceeeccccCCcchH
Q psy15831 118 RTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDL 197 (304)
Q Consensus 118 ~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~glkPT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~Dl 197 (304)
|+|||||||||++||+|++++++|||+|||||+||+||||||||||+|+||+.|++|.++ ++|++|||+|||+|+
T Consensus 137 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~-----sld~~Gp~arsv~D~ 211 (476)
T 2gi3_A 137 RVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFAS-----SLDQIGPITKTVRDA 211 (476)
T ss_dssp BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCT-----TTCEEEEEESSHHHH
T ss_pred CCCCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCccc-----CCCeeeeeeCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred HHHHHHHcCCCccccccccCCc--------cccCCcEEEEECCCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEec
Q psy15831 198 PLVLHLMISDREQAKSLRLLEP--------VIVQDIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVN 269 (304)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~~~~--------~~~~~lrig~~~~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~ 269 (304)
++++++|.+. +..++.....+ ...+++||||+.+. +...++++++++++++++.|++ +||+|++++
T Consensus 212 a~~l~~l~g~-d~~d~~~~~~p~~~~~~~~~~~~~lrig~~~~~----~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~ 285 (476)
T 2gi3_A 212 AILMEIISGR-DENDATTVNRKVDFLSEIEEGVSGMKFAVPEEI----YEHDIEEGVSERFEEALKLLER-LGAKVERVK 285 (476)
T ss_dssp HHHHHHHBSC-BTTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGG----GGSCCCHHHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHhhCC-CCCCccccCCCcchhhhhhcCCCCCEEEEECcc----ccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeC
Confidence 9999999996 33333222111 13578999999863 2356899999999999999999 599999998
Q ss_pred C-ChHHHHHHH
Q psy15831 270 I-DLEDVFELV 279 (304)
Q Consensus 270 ~-~~~~~~~~~ 279 (304)
+ .+.+....|
T Consensus 286 ~p~~~~~~~~~ 296 (476)
T 2gi3_A 286 IPHIKYSVATY 296 (476)
T ss_dssp CTTGGGHHHHH
T ss_pred CCchHHHHHHH
Confidence 8 555554444
No 8
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.2e-68 Score=531.87 Aligned_cols=267 Identities=27% Similarity=0.378 Sum_probs=229.1
Q ss_pred eeEEEecCHHHHHHHHHHHhHHHHcCCCcccccCCCCCcccceEEeecCCCCCCccCCCCCCCCCCCCCCcchHHHHHHH
Q psy15831 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLR 81 (304)
Q Consensus 2 lna~~~~~~~~al~~A~~~d~~~~~~~~~~~~~~~~~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~da~~V~~L~ 81 (304)
+||+++..+| ++++|+++++ .+|||||||+|||+|+++|++||+||..+.++++.+|+++|++|+
T Consensus 105 ~na~~~~~~~-a~~~a~~~~~--------------~gpL~GvPi~vKD~~~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~ 169 (573)
T 3ppm_A 105 TNCVTSYLTD-CETQLSQAPR--------------QGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLK 169 (573)
T ss_dssp HCCEEEECTT-HHHHHHHCCT--------------TCTTTTCEEEEETTBCCBTCCCCTTCGGGTTCCBSSCCHHHHHHH
T ss_pred cCEEEEECHH-HHHHHHhhhh--------------cCCcCCCeEEEEcccCCCCCCcCCcChhhcCCCCCcchHHHHHHH
Confidence 6999998766 5566654431 389999999999999999999999999999999999999999999
Q ss_pred HcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCceeec
Q psy15831 82 QAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHK 161 (304)
Q Consensus 82 ~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~glk 161 (304)
++|||++||||||||+++.++.|+.||+|+||||+.++||||||||||+||+|++++|+|||+|||||+||+||||||||
T Consensus 170 ~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlK 249 (573)
T 3ppm_A 170 LQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 249 (573)
T ss_dssp HTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEE
T ss_pred HCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccCCCCceeeccccCCcchHHHHHHHHcCCCcc-cc----ccccCCc--cccCCcEEEEECCCC
Q psy15831 162 PSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQ-AK----SLRLLEP--VIVQDIKVFYMEDDG 234 (304)
Q Consensus 162 PT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~Dl~~~~~~l~~~~~~-~~----~~~~~~~--~~~~~lrig~~~~~g 234 (304)
||+||+|+.|++|.+. +....+|++|||+|||+|+++++++|.+.|+. .+ +.++... ...+++||||+.+++
T Consensus 250 PT~Grvs~~G~~~~~~-~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~ 328 (573)
T 3ppm_A 250 PTGNRLSKSGLKGCVY-GQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN 328 (573)
T ss_dssp CCGGGSCCTTBCCSCC-SCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS
T ss_pred CCCCcccCCCCCCccc-ccCcccccccceeCcHHHHHHHHHHHhcccccccCCCCCccccchhhcccCCCCEEEEEcccC
Confidence 9999999999999875 33446899999999999999999999984211 11 1222211 136889999998765
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC-ChHHHHHHHHHHHhcccCc
Q psy15831 235 SCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI-DLEDVFELVSMVLLKMNGI 289 (304)
Q Consensus 235 ~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~-~~~~~~~~~~~~~~~~~g~ 289 (304)
+..++|+++++++++++.|++ +||+|+++++ .+.+++..+.......+|.
T Consensus 329 ----~~~~~p~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~~~~~~~~~dg~ 379 (573)
T 3ppm_A 329 ----YTMPSPAMRRALIETKQRLEA-AGHTLIPFLPNNIPYALEVLSTGGLFSDGG 379 (573)
T ss_dssp ----SSCCCHHHHHHHHHHHHHHHH-TTCEEEECCCTTHHHHHHTHHHHHHTTBTT
T ss_pred ----CCCCCHHHHHHHHHHHHHHHH-CCCEEEEecCccHHHHHHHHHHHHHhhhhH
Confidence 457899999999999999999 5999999998 7777776443333333443
No 9
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=1.3e-66 Score=515.65 Aligned_cols=233 Identities=30% Similarity=0.459 Sum_probs=208.5
Q ss_pred CCCcccceEEeecCCCCCCccCCCCCCCCCCCCCCcchHHHHHHHHcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCC
Q psy15831 37 DTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDT 116 (304)
Q Consensus 37 ~~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~da~~V~~L~~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~ 116 (304)
.+||+||||+|||+|+++|++||+||+.+.++++.+|+++|+||++||||++||||||||+++.+++|++||+|+||||+
T Consensus 85 ~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~ 164 (521)
T 3a1k_A 85 DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDR 164 (521)
T ss_dssp CCTTTTCEEEEETTBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEE
T ss_pred CCCCCCCEEEEEcCcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCceeeccCCCCCCCCCCCCCCCccCCCCceeeccccCCcch
Q psy15831 117 RRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAED 196 (304)
Q Consensus 117 ~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~glkPT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~D 196 (304)
.|+|||||||||++||+|++++++|||||||||+||+||||||||||+|+||+.|++|.++ ++|++|||+|||+|
T Consensus 165 ~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~-----sld~~Gp~aRsv~D 239 (521)
T 3a1k_A 165 QREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIER-----TIDHLGPITRTVHD 239 (521)
T ss_dssp EEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCG-----GGCEEEEEESSHHH
T ss_pred CCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCccc-----ccCeeCceeCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred HHHHHHHHcCCCccccccc--------cCCc--cccCCcEEEEECCCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q psy15831 197 LPLVLHLMISDREQAKSLR--------LLEP--VIVQDIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQ 266 (304)
Q Consensus 197 l~~~~~~l~~~~~~~~~~~--------~~~~--~~~~~lrig~~~~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~ 266 (304)
+++++++|.+. +..++.. +... ...+++||||+.+. +....++++++++++++++.|+++ |++|+
T Consensus 240 ~a~~l~vlag~-d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~---~~~~~~~~~v~~a~~~a~~~L~~~-Ga~v~ 314 (521)
T 3a1k_A 240 AALMLSVIAGR-DGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREG---FGHAVSQPEVDDAVRAAAHSLTEI-GCTVE 314 (521)
T ss_dssp HHHHHHHHCSC-CSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGG---SCCSSSCHHHHHHHHHHHHGGGGG-TCEEE
T ss_pred HHHHHHHHhCC-CCCCccccccCCCcchhhhhccCccCcEEEEECcc---ccccCCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence 99999999996 3333322 1111 13578999998762 112357999999999999999995 99999
Q ss_pred EecC-ChHHHHHHH
Q psy15831 267 KVNI-DLEDVFELV 279 (304)
Q Consensus 267 ~~~~-~~~~~~~~~ 279 (304)
++++ .+.+...+|
T Consensus 315 ev~~p~~~~~~~~~ 328 (521)
T 3a1k_A 315 EVNIPWHLHAFHIW 328 (521)
T ss_dssp EECCTHHHHHHHHH
T ss_pred EeCCCchHhHHHHH
Confidence 9998 444444444
No 10
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=6.6e-66 Score=497.88 Aligned_cols=212 Identities=25% Similarity=0.343 Sum_probs=196.1
Q ss_pred CCCcccceEEeecCCCCCCccCCCCCCCCCCCCCCcchHHHHHHHHcCCeEEEEcCcCccccccCCCCCCCCCCCCCCCC
Q psy15831 37 DTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDT 116 (304)
Q Consensus 37 ~~pL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~~~~da~~V~~L~~aGai~igkt~~~e~~~~~~~~n~~~G~t~NP~~~ 116 (304)
.+|||||||+|||+|+++|++||+||..+.++++.+|+++|++|+++|||++||||||||++ .|+ |+|+||||+
T Consensus 51 ~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~ 124 (414)
T 1o9p_A 51 SGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNT 124 (414)
T ss_dssp SSTTTTCEEEEETTBCCSSSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBT
T ss_pred CCCcCCCEEEEEcccccCCcccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999998 344 999999999
Q ss_pred CCCCCCCchHHHHHHHhCCcceeEeccCCCcccccccccCceeeccCCCCCCCCCCCCCCCccCCCCceeeccccCCcch
Q psy15831 117 RRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAED 196 (304)
Q Consensus 117 ~~~~GGSSgGsaaavaag~~~~alGtD~gGSiR~PAa~~Gv~glkPT~g~vs~~G~~p~~~~~~~~~~~~~G~~arsv~D 196 (304)
.|+|||||||||++||+|++++++|||+|||||+||+|||+||||||+|+||+.|++|.++ ++|++|||+|+|+|
T Consensus 125 ~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~-----s~d~~Gp~arsv~D 199 (414)
T 1o9p_A 125 GHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSW-----ALDTVGLFGARAED 199 (414)
T ss_dssp TBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCT-----TTCEEEEEESSHHH
T ss_pred CCCCCcchHHHHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCC-----ccCeeccccCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred HHHHHHHHcCCCccccccccCCccccCCcEEEEECCCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy15831 197 LPLVLHLMISDREQAKSLRLLEPVIVQDIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI 270 (304)
Q Consensus 197 l~~~~~~l~~~~~~~~~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~ 270 (304)
+++++++|.+. + ++. .+...+++||||+.+++ +..++|+++++++++++.|++ +||+|+++++
T Consensus 200 ~a~~~~~l~g~-~--~~~---~~~~~~~lrig~~~~~~----~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~ 262 (414)
T 1o9p_A 200 LARGLLAMTGR-S--EFS---GIVPAKAPRIGVVRQEF----AGAVEPAAEQGLQAAIKAAER-AGASVQAIDL 262 (414)
T ss_dssp HHHHHHHHHCC-G--GGS---SCCCCSSCEEEECCCGG----GCCCCHHHHHHHHHHHHHHHH-TTCEEEECCC
T ss_pred HHHHHHHhcCC-C--ccc---cccCCCCCEEEEECccc----cCCCCHHHHHHHHHHHHHHHH-CCCEEEEecC
Confidence 99999999995 2 111 11235789999988743 457899999999999999999 5999999987
No 11
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=23.26 E-value=84 Score=24.84 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=30.9
Q ss_pred ccCCcEEE-EECCCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q psy15831 221 IVQDIKVF-YMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQ 266 (304)
Q Consensus 221 ~~~~lrig-~~~~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~ 266 (304)
+..+|||. -..+ |...+|+..++|++-++.|+++ |..++
T Consensus 102 S~~PLrIvgEv~~------W~~h~pE~lq~mr~~La~l~~~-g~~~I 141 (143)
T 2hw2_A 102 TREPVWIVGELTD------WVGHPPEQLAAMRQGLEELRRK-GLAVI 141 (143)
T ss_dssp ESSCEEEEEEECC------CCCCCHHHHHHHHHHHHHHHHT-TCCCC
T ss_pred cCCCcEEEEEecc------cCCCCHHHHHHHHHHHHHHHhc-ccccc
Confidence 35678975 4444 6789999999999999999995 87653
No 12
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=22.05 E-value=1.3e+02 Score=26.27 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=33.9
Q ss_pred cCCcEEEEECCCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC-ChHHHHHH
Q psy15831 222 VQDIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI-DLEDVFEL 278 (304)
Q Consensus 222 ~~~lrig~~~~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~-~~~~~~~~ 278 (304)
.+.+|||+.... ....+.+.++..++.|++.+|.+|+-+.. ++....+.
T Consensus 3 ~~~l~iG~~p~~--------~p~~~~~~~~~l~~~l~k~lG~~ve~~~~~~~~~~i~a 52 (310)
T 3n5l_A 3 QPVINFGIISTE--------SSQNLKSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQG 52 (310)
T ss_dssp CCEEEEEECCSS--------CHHHHHHHHHHHHHHHHHHHSSEEEEECCSSHHHHHHH
T ss_pred CcEEEEEEecCC--------CHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHH
Confidence 356899987541 23456677888999998878999876654 55554443
No 13
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=21.11 E-value=1.5e+02 Score=23.81 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=41.8
Q ss_pred CcEEEEECCCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC----ChHHHHHHHHHHH----hcccC-cccccc
Q psy15831 224 DIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI----DLEDVFELVSMVL----LKMNG-INCPYQ 294 (304)
Q Consensus 224 ~lrig~~~~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~----~~~~~~~~~~~~~----~~~~g-~~~~~~ 294 (304)
++||++...- | .+.=+.+.++.+++.|++ +|.++..+.. ++..+.+...... ..+|+ +..+.-
T Consensus 12 ~~ri~IV~ar-----f--n~~I~~~Ll~gA~~~l~~-~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~V 83 (157)
T 2i0f_A 12 APHLLIVEAR-----F--YDDLADALLDGAKAALDE-AGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTV 83 (157)
T ss_dssp CCEEEEEEEC-----S--SHHHHHHHHHHHHHHHHH-TTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEE
T ss_pred CcEEEEEEEe-----C--cHHHHHHHHHHHHHHHHH-cCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeee
Confidence 4899987641 2 134456788889999999 5976655443 4444444332221 33566 333344
Q ss_pred ccCCCCCCCC
Q psy15831 295 EDDEHPEFNY 304 (304)
Q Consensus 295 ~~~~~~~~~~ 304 (304)
+.++-|+|.|
T Consensus 84 IrG~T~Hfd~ 93 (157)
T 2i0f_A 84 IRGETYHFDI 93 (157)
T ss_dssp ECCSSSTTHH
T ss_pred ecCCchHHHH
Confidence 5666666643
No 14
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=21.09 E-value=1.3e+02 Score=26.58 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=35.4
Q ss_pred ccCCcEEEEECCCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecC-ChHHHHHHH
Q psy15831 221 IVQDIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI-DLEDVFELV 279 (304)
Q Consensus 221 ~~~~lrig~~~~~g~~~~~~~~~~~v~~a~~~a~~~L~~~lG~~v~~~~~-~~~~~~~~~ 279 (304)
..+.+|||+... .....+.+.++..++.|.+.+|.+|+-+.. ++....+.+
T Consensus 12 ~~~~l~~Gv~p~--------~~~~~~~~~~~~l~~~L~k~lG~~ve~~~~~~~~~~i~aL 63 (321)
T 3p7i_A 12 QEKALNFGIIST--------ESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGM 63 (321)
T ss_dssp --CCEEEEECCS--------SCHHHHHHHHHHHHHHHHHHHTSCEEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEecC--------CCHHHHHHHHHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 456799998754 124567788999999998888999876644 555544433
Done!