RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15831
(304 letters)
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 200 bits (511), Expect = 2e-61
Identities = 91/265 (34%), Positives = 127/265 (47%), Gaps = 25/265 (9%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
LNA V F AL +AK D A K PL GVP+++K+++ VKG AG
Sbjct: 17 LNAFVTVFFEEALAQAKAADKRRARKEKG--------PLHGVPISLKDNIDVKGVPTTAG 68
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
+ DA V LR AGA+IL TN E M T N A G T NP+D RTPG
Sbjct: 69 SKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPTRNPWDLSRTPG 128
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMW 181
GSSGG AA +++G + + +D GS RIPA F G+ G KP+ G VS G +P S
Sbjct: 129 GSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPYS----- 183
Query: 182 NTYFTIGLLARYAEDLPLVLHLMI--------SDREQAKSLRLLEPVIVQDIKVFYMEDD 233
++ +G LAR ED L+L ++ S ++ +++ +D
Sbjct: 184 SSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGLRIGVPRED 243
Query: 234 GSCTLTDGVDLDIKEGIRKAVHHLE 258
+L +++ +RKA LE
Sbjct: 244 FYFSLDP----EVQRAVRKAAAALE 264
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 190 bits (485), Expect = 6e-57
Identities = 93/269 (34%), Positives = 135/269 (50%), Gaps = 21/269 (7%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
+NA+V F+ A A+ D A G PLLG+P+TVKES V G G
Sbjct: 46 INAIVVRDFDRARAAARAADAARAR--------GERGPLLGIPVTVKESFNVAGLPTTWG 97
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
++ + +DA V L+ AGA+IL TN P +W+++N+ GTTNNP+D RTPG
Sbjct: 98 FPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPG 157
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMW 181
GSSGG AA L++G + + SDI GS R+PA + GV+ HKP+ G V GH+P +
Sbjct: 158 GSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALP 217
Query: 182 NT--YFTIGLLARYAEDLPLVLHLMIS-DR-EQAKSLRLLEPVI----VQDIKVFYMEDD 233
G +AR A DL L+L +M D + + RL P ++D +V +++
Sbjct: 218 GQADLAVAGPMARSARDLALLLDVMAGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEH 277
Query: 234 GSCTLTDGVDLDIKEGIRKAVHHLEYKQG 262
D ++ I + L G
Sbjct: 278 PLLP----TDAAVRAAIERLAAALA-DAG 301
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 185 bits (472), Expect = 3e-55
Identities = 100/284 (35%), Positives = 137/284 (48%), Gaps = 29/284 (10%)
Query: 2 LNAVV--DERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNN 59
LNA V D LAL EA D LAA E +G PL GVP+ VK+++ G
Sbjct: 41 LNAFVAVDPEAALALAEAAAADARLAAG----EPLG---PLAGVPIAVKDNIDTAGLPTT 93
Query: 60 AGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRT 119
AG ++ + DA V LR AGA+IL TN E M T N A G T NP++ R
Sbjct: 94 AGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERV 153
Query: 120 PGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP--SSE 177
PGGSSGG AA +++G + + SD GS RIPA F G+ G KP+ G VS G +P SS
Sbjct: 154 PGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSL 213
Query: 178 DKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPVI-------VQDIKVFYM 230
D IG LAR D L+L ++ + L PV ++ +++
Sbjct: 214 D-------QIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPALAGKDLKGLRIGVP 266
Query: 231 EDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDLED 274
++ G +D D++ AV LE G + +V++ L
Sbjct: 267 KELG---GGGPLDPDVRAAFEAAVKALE-AAGAEVVEVSLPLLS 306
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 143 bits (364), Expect = 1e-39
Identities = 83/215 (38%), Positives = 107/215 (49%), Gaps = 23/215 (10%)
Query: 1 MLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNA 60
+NAVVD R AL +A VD A ++ G PL GVP+TVK +V G +
Sbjct: 41 AINAVVDHRPEEALAQADAVDAARARG----DDPG---PLAGVPVTVKVNVDQAGFATTN 93
Query: 61 GRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTP 120
G K+ IA D+ V LR+AGA+I+ TNTP W T N G T NP+D TP
Sbjct: 94 GVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTP 153
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKM 180
GGSSGG AA +++G + +DI GS R PA GV G +P+ G V + SS ++
Sbjct: 154 GGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVP--AYNASSPER- 210
Query: 181 WNTYFTI--------GLLARYAEDLPLVLHLMISD 207
I G LAR DL L L M +
Sbjct: 211 -----PIGAQLMSVQGPLARTVADLRLALAAMAAP 240
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 140 bits (356), Expect = 2e-38
Identities = 87/286 (30%), Positives = 120/286 (41%), Gaps = 36/286 (12%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
LNA AL A+++D AA G L GVP+ +K+++ G AG
Sbjct: 44 LNAFTTVDAEGALAAARRIDAQRAA--------GAALLLAGVPIVIKDNINTAGMPTTAG 95
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
+ DA V+ L AGA+ L N EL + N A G NPYD R G
Sbjct: 96 TPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAG 155
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMW 181
GSSGG AA +++ + G+ +D GS RIPA GV G +P+ G S G +P S
Sbjct: 156 GSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPIS----- 210
Query: 182 NTYFTIGLLARYAEDLPLVLHLMISDRE-----QAKSLRLLEPVIVQDIKVFYMEDDGSC 236
+T T+G +AR DL L+ ++ D LRL P +
Sbjct: 211 HTRDTVGPIARSVADLALLDAVITGDAALPAPVALAGLRLGVP---------------AA 255
Query: 237 TLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDLEDVFELVSMV 282
DG+D D+ A+ L V +DL + EL V
Sbjct: 256 PFWDGLDPDVAAVAEAALAKLAAAG---VTFVELDLPGLHELNEAV 298
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 140 bits (355), Expect = 2e-38
Identities = 80/200 (40%), Positives = 101/200 (50%), Gaps = 14/200 (7%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
L A F+ A EA+ L A G PLLGVP+ +K+ V V G G
Sbjct: 43 LRAYRVVLFDRARAEAEAAQQRLDA--------GERLPLLGVPIAIKDDVDVAGEVTTYG 94
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
AT DAE VR LR AGA+I+ TN PEL + T + A G T NP+D RTPG
Sbjct: 95 S-AGHGPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPG 153
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMW 181
GSSGG AA +++G + V + SD GS RIP+ + G+FG KP +S H D W
Sbjct: 154 GSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPH-----DGAW 208
Query: 182 NTYFTIGLLARYAEDLPLVL 201
G +AR D L+L
Sbjct: 209 QGLSVNGPIARSVMDAALLL 228
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 133 bits (337), Expect = 1e-35
Identities = 86/204 (42%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNN-- 59
LNA R AL EA + D AA G PLLGVP+ VK+ V V G
Sbjct: 52 LNAFRVVRAEAALAEAAEADRRRAA--------GDRLPLLGVPIAVKDDVDVAGVPTAFG 103
Query: 60 -AGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWE-TFNKATGTTNNPYDTR 117
AG + P AT D+E VR LR AGA+I+ TNT EL W T A G T NP+
Sbjct: 104 TAGEVPP----ATADSEVVRRLRAAGAVIVGKTNTCELGQ-WPFTSGPAFGHTRNPWSRD 158
Query: 118 RTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSE 177
TPGGSSGG AA +++G + SD AGS RIPA +T + G KP G +S P E
Sbjct: 159 HTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRIST---WPLPE 215
Query: 178 DKMWNTYFTIGLLARYAEDLPLVL 201
+N G LAR D L+L
Sbjct: 216 --AFNGLTVNGPLARTVADAALLL 237
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 129 bits (328), Expect = 2e-34
Identities = 94/286 (32%), Positives = 133/286 (46%), Gaps = 36/286 (12%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
LNA + AL +AK D LAA G PL G+P+ +K+++ KG
Sbjct: 26 LNAFITVTEEEALAQAKAADAKLAA--------GEAGPLAGIPIAIKDNICTKGIRTTCA 77
Query: 62 -RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTP 120
+I + + DA V L+ AGA+IL TN E M T N A G T NP+D R P
Sbjct: 78 SKIL-ENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVP 136
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP--SSED 178
GGSSGG AA +++G + + SD GS R PA F GV G KP+ G VS G + SS D
Sbjct: 137 GGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLD 196
Query: 179 KMWNTYFTIGLLARYAEDLPLVLHLMI---------SDREQAKSLRLLEPVIVQDIKVFY 229
IG AR ED L+L+ + +D L ++ +K+
Sbjct: 197 -------QIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGK-DIKGLKIGV 248
Query: 230 MEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDLEDV 275
++ +G+D ++KE + A+ LE G A+ V + L
Sbjct: 249 PKE----YFGEGLDPEVKEAVEAAIKKLE-DLG--AEIVEVSLPHT 287
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 116 bits (292), Expect = 2e-29
Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 22/230 (9%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
+NA ++ AL++AK++D + I TPL G+P+ VK++++ KG
Sbjct: 30 INAFLEVTVEKALKQAKKLD----------KAI--LTPLAGIPIAVKDNISTKGIVTTCA 77
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
+ I DA + L+QAGA+I+ TN E M T A G T NP++ R PG
Sbjct: 78 SKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPG 137
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP--SSEDK 179
GSSGG AA +++ + + SD GS R PA F GV G KP+ G VS G + SS D
Sbjct: 138 GSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLD- 196
Query: 180 MWNTYFTIGLLARYAEDLPLVLHLMI-SDREQAKSLRLLEPVIVQDIKVF 228
IG AR ED+ L+L ++ D+ + S ++ +P +++K
Sbjct: 197 ------QIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKD 240
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 114 bits (288), Expect = 5e-29
Identities = 77/222 (34%), Positives = 101/222 (45%), Gaps = 17/222 (7%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLL-GVPLTVKESVAVKGCSNNA 60
LNA AL +A ++D LAA G L GVP VK V G + A
Sbjct: 34 LNAFTAVTAERALADAARIDADLAA--------GSPLGPLAGVPFAVKNLFDVAGLTTLA 85
Query: 61 G-RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRT 119
G +I A DA V+ L AGA+++ N E + T N G T NP+D R
Sbjct: 86 GAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRI 145
Query: 120 PGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDK 179
GGSSGG AA +++G + SD GS R+PA GVFG KP+ G +S G P
Sbjct: 146 AGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVA-- 203
Query: 180 MWNTYFTIGLLARYAEDLPLVLHLM--ISDREQAKSLRLLEP 219
+ +G AR EDL L +M ++ + R EP
Sbjct: 204 ---SLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEP 242
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 115 bits (289), Expect = 5e-29
Identities = 87/230 (37%), Positives = 107/230 (46%), Gaps = 31/230 (13%)
Query: 2 LNA---VVDERFNLALEEAKQVDILLAASTKSVEEIGRDT-PLLGVPLTVKESVAVKGCS 57
LNA V ER AL EA ++D AA G PL GVP VK V G +
Sbjct: 41 LNAFTAVTAER---ALAEAARIDAARAA--------GEPLGPLAGVPFAVKNLFDVAGLT 89
Query: 58 NNAG-RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDT 116
AG +I AT DA VR L AGA+++ N E + T N G T NP+D
Sbjct: 90 TLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDL 149
Query: 117 RRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP-- 174
R GGSSGG AA +++G + SD GS R+PA G+FG KP+ G +S G P
Sbjct: 150 TRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFV 209
Query: 175 SSEDKMWNTYFTIGLLARYAEDLPLVLHLM----ISDREQAKSLRLLEPV 220
+S D IG AR DL LV ++ D QA R EP
Sbjct: 210 ASLD-------HIGPFARSVADLALVYDVLQGPDPQDPFQAD--RPAEPT 250
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 113 bits (285), Expect = 1e-28
Identities = 92/266 (34%), Positives = 122/266 (45%), Gaps = 31/266 (11%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKE-SVAVKGCSNNA 60
LNA+V ER+ ALEEAKQ D P GVP+ +K+ +KG + +
Sbjct: 38 LNAIVSERYEEALEEAKQRDFS-------------GKPFAGVPIFLKDLGQELKGQLSTS 84
Query: 61 GRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTP 120
G K AT V+ L G IIL +NTPE + + G N P+D R
Sbjct: 85 GSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNA 144
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKM 180
GGSSGG AAL+SSG + ASD GS RIPA F G+ G KPS G + VG P S +
Sbjct: 145 GGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRIP-VG--PGSY-RG 200
Query: 181 WNTYFTIGLLARYAEDLP-LVLHLMISDREQAKSL-RLLEPVIVQDIK-----VFYMED- 232
W L + D L+ +L + E L L + + Q ++ FY
Sbjct: 201 WQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKESLFQSLQRPLKIAFYQRSP 260
Query: 233 DGSCTLTDGVDLDIKEGIRKAVHHLE 258
DGS V LD + +++AV L
Sbjct: 261 DGS-----PVSLDAAKALKQAVTFLR 281
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 113 bits (285), Expect = 2e-28
Identities = 75/205 (36%), Positives = 98/205 (47%), Gaps = 20/205 (9%)
Query: 2 LNAVVDERFNLAL-EEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNA 60
+NA+V R AL EA + D LA E G L G+P K+ KG
Sbjct: 46 VNAIVALRDRDALLAEAAEKDAALARG----EYRG---WLHGMPQAPKDLAPTKGIRTTL 98
Query: 61 GRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTP 120
G +++ +DA V +R AGAI + TNTPE + T+N G T NPYD R+
Sbjct: 99 GSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSA 158
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKM 180
GGSSGG AA L+ V SD+ GS R PA F V+G +PS G V H P +
Sbjct: 159 GGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVP---HGPGGD--- 212
Query: 181 WNTYF----TIGLLARYAEDLPLVL 201
+ T G + R ED+ L+L
Sbjct: 213 --VFVQQLGTEGPMGRTVEDVALLL 235
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 113 bits (285), Expect = 2e-28
Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAG-RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELC 97
L GVP+++K+ +G G R + DA V LR+AGA++L T TPE
Sbjct: 71 LLDGVPVSIKDIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFG 130
Query: 98 MNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGV 157
T + G T NP+DTR T GGSSGG AA ++ G + V +D GS RIPA F G
Sbjct: 131 WKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFCGT 190
Query: 158 FGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVL 201
FG KP+ G V P+S + T +G + R D L+L
Sbjct: 191 FGFKPTFGRVP---LYPASP---FGTLAHVGPMTRTVADAALLL 228
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 101 bits (253), Expect = 4e-24
Identities = 50/129 (38%), Positives = 70/129 (54%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCM 98
PL GVP+T+KE++A +G G A DA LR+AGA+IL T P+ M
Sbjct: 71 PLDGVPVTIKENIATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGM 130
Query: 99 NWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVF 158
+ G T NP+D + PGGSS G A ++G + + +DI GS R+PA + G+
Sbjct: 131 LSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIV 190
Query: 159 GHKPSPGFV 167
G KPS G +
Sbjct: 191 GLKPSLGRI 199
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 100 bits (251), Expect = 7e-24
Identities = 80/281 (28%), Positives = 115/281 (40%), Gaps = 43/281 (15%)
Query: 13 ALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG-RIKPKERIAT 71
A A D L AA +PL G+P++VK+ V G AG R+ A
Sbjct: 52 ARAAADAADALRAAGAAP-------SPLAGIPVSVKDLFDVAGQVTRAGSRVLADAPPAA 104
Query: 72 DDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPY----DTRRTPGGSSGGE 127
DA V LR+AGA+++ TN E + N GT NP+ R PGGSS G
Sbjct: 105 ADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGA 164
Query: 128 AALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTI 187
A ++ G + + +D GS RIPA G+ G KP+ V G +P S T +I
Sbjct: 165 AVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLS-----TTLDSI 219
Query: 188 GLLARYAEDLPLVLHLMISDREQA-------KSLRLLEPVIVQDIKVFYMEDDGSCTLTD 240
G LAR ++ +++ E + LRL P V + D
Sbjct: 220 GPLARSVACC-ALVDAVLAGEEPVVPAARPLEGLRLAVPTTV---------------VLD 263
Query: 241 GVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDLEDVFELVSM 281
G+D + +A+ L G A I ++ EL +
Sbjct: 264 GLDATVAAAFERALKRLS-AAG--AIIEEIAFPELAELAEI 301
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 99.5 bits (248), Expect = 2e-23
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 33/216 (15%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGR-DTPLLGVPLTVKESV-AVKGCSNN 59
LNAV++ + A +A +D A G+ PL G+P+ +K+++ A
Sbjct: 43 LNAVIELNPD-AEADAAALDAERKA--------GKVRGPLHGIPVLLKDNIDAADPMPTT 93
Query: 60 AGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETF--NKAT-------GTT 110
AG + T DA V LR AGA+IL N E W F +++ G T
Sbjct: 94 AGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSE----WANFRSTRSSSGWSARGGLT 149
Query: 111 NNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNV 170
NPY R+P GSS G A +++G + V + ++ GS PA G+ G KP+ G VS
Sbjct: 150 RNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRD 209
Query: 171 GHMP--SSEDKMWNTYFTIGLLARYAEDLPLVLHLM 204
G +P S+D T G + R D VL +
Sbjct: 210 GIVPISHSQD-------TAGPMTRTVADAAAVLTAI 238
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 91.5 bits (227), Expect = 1e-20
Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 41/302 (13%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESV-AVKGCSNNA 60
LN+V + N A+EEA+++D + + L G+P+ VK++V K +A
Sbjct: 108 LNSVTEINPN-AMEEARKLD--------QERSRNKKSNLYGIPVVVKDNVQTAKVMPTSA 158
Query: 61 GRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATG------TTNNPY 114
G K+ IA DA V+ L++ GA +L N E N+ +F +G NPY
Sbjct: 159 GTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWA-NYLSFTMPSGYSGKKGQNLNPY 217
Query: 115 DTRR-TPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHM 173
+ GSS G A ++++ + + V ++ GS PA V G +PS G VS G +
Sbjct: 218 GPIKFDTSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGII 277
Query: 174 PSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPVIVQDIKVFYMEDD 233
P +E T T G +AR +D + + MI E +D+ ++D
Sbjct: 278 PLAE-----TLDTAGPMARTVKDAATLFNAMIGYDE-------------KDVMTEKVKDK 319
Query: 234 GSCTLTDGVDLDI----KEGIRKAVHHLEYKQGIKAQKVNIDLEDV-FELVSMVLLKMNG 288
T + +D K G+ +V + + A+K+ DL+D L + L G
Sbjct: 320 ERIDYTKDLSIDGLKGKKIGLLFSVDQQDENRKAVAEKIRKDLQDAGAILTDYIQLNNGG 379
Query: 289 IN 290
++
Sbjct: 380 VD 381
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 88.9 bits (221), Expect = 1e-19
Identities = 56/180 (31%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 35 GRDTPLLGVPLTVKESVAVKGCSNNAGRIKPK-ERIATDDAETVRLLRQAGAIILCVTNT 93
PL GVP VK+++ V G A P +DA V LLR AGAI++ TN
Sbjct: 27 PERLPLYGVPFAVKDNIDVAGLPTTAA--CPAFAYTPEEDATVVALLRAAGAIVVGKTNL 84
Query: 94 PELCMNWETFNKATGT--TNNPY-------DTRRTPGGSSGGEAALLSSGASIVGVASDI 144
+ ATG T +PY D GGSS G A ++ G + +D
Sbjct: 85 DQF---------ATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDT 135
Query: 145 AGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLM 204
AGS R+PA + G KP+ G VS G +P+ + + + A D VL +
Sbjct: 136 AGSGRVPAALNNIVGLKPTKGLVSTTGVVPACR-----SLDCVSIFALTVADAEQVLRIA 190
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 87.9 bits (218), Expect = 1e-19
Identities = 60/190 (31%), Positives = 85/190 (44%), Gaps = 11/190 (5%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAGR-IKPKERIATDDAETVRLLRQAGAIILCVTNTPELC 97
PL G +++K+ V G AG I+ A DA V+ LR AGA+I+ T+ E
Sbjct: 45 PLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEFA 104
Query: 98 MNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGV 157
N G N D R PGGSS G A ++ G S + + SD GS RIPA G+
Sbjct: 105 FTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGL 164
Query: 158 FGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLL 217
G KP+ + G P S + +IG LAR D +M ++ L
Sbjct: 165 VGFKPTARRIPLEGAFPLSP-----SLDSIGPLARTVADCAAADAVMAGEKP-----IPL 214
Query: 218 EPVIVQDIKV 227
E + V +++
Sbjct: 215 EVLPVAGLRI 224
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 87.8 bits (218), Expect = 2e-19
Identities = 69/251 (27%), Positives = 106/251 (42%), Gaps = 34/251 (13%)
Query: 37 DTPLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPEL 96
+ L G + +K++VAV G G + + + DA V L AGA I+ +L
Sbjct: 85 EGKLAGKTVALKDNVAVAGVPMMNGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDL 144
Query: 97 CMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTG 156
C + + G +NP D + GGSS G AAL+++G + + D GS RIP+ + G
Sbjct: 145 CFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCG 204
Query: 157 VFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRL 216
++G KP+ G V G P + T +G + D L+L ++
Sbjct: 205 IYGMKPTHGLVPYTGAFP-----IERTIDHLGPMTATVRDNALLLEVIAGRDG------- 252
Query: 217 LEPVIVQDIKVFYMEDDGSCTLTDGV-DLDI---KEG-------------IRKAVHHLEY 259
L+P V DD + L GV L I +EG +R A LE
Sbjct: 253 LDPRQPAQPPV----DDYTAALDRGVKGLKIGILREGFGLPNSEPEVDEAVRAAAKRLE- 307
Query: 260 KQGIKAQKVNI 270
G ++V+I
Sbjct: 308 DLGATVEEVSI 318
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 87.0 bits (216), Expect = 3e-19
Identities = 52/164 (31%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
LNA+ F+ A + A + + GVP +K++V V G G
Sbjct: 49 LNALAYAAFDRARDRAARPG-------------SQGGFFSGVPTFIKDNVDVAGLPTMHG 95
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
R A D++ R G I L T PE + T + G NP++T + G
Sbjct: 96 SDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAG 155
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPG 165
SSGG AAL+++G + A+D GS RIPA G+ G KPS G
Sbjct: 156 ASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRG 199
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 85.6 bits (212), Expect = 1e-18
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 39 PLLGVPLTVKESVAVKG-CSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELC 97
PL G+P+ +K+++ +AG I ++ I+++DA V LR+AGA+IL N EL
Sbjct: 79 PLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTELA 138
Query: 98 --MN---WETFNKATGTTNNPYDT---RRTPGGSSGGEAALLSSGASIVGVASDIAGSCR 149
M+ W ++ G T NPY T GGSS G A +++ ++V V ++ GS
Sbjct: 139 NFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGSIL 198
Query: 150 IPAMFTGVFGHKPSPGFVSNVGHMP--SSEDKMWNTYFTIGLLARYAEDLPLVL 201
PA+ V G KP+ G +S G +P S+D T G AR D ++L
Sbjct: 199 SPAVQNSVVGIKPTVGLISRRGIIPFTYSQD-------TAGPFARTVTDAAILL 245
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 84.7 bits (210), Expect = 1e-18
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 13/188 (6%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAG--RIKPKERIATDDAETVRLLRQAGAIILCVTNTPEL 96
PL G+ VK+ V G G + +AT A V L AGA + T T EL
Sbjct: 25 PLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDEL 84
Query: 97 C--MNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMF 154
+N + N GT NP R PGGSS G AA ++ G + + +D GS R PA F
Sbjct: 85 AFSLNGQ--NAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASF 142
Query: 155 TGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSL 214
G++G +P+ G +S G MP + ++ T+G AR L V +++ + A+
Sbjct: 143 CGLYGLRPTHGRISLEGVMPLAP-----SFDTVGWFARDIALLERVGEVLL--GDDAQEF 195
Query: 215 RLLEPVIV 222
L + +++
Sbjct: 196 PLTQRLLI 203
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 82.6 bits (205), Expect = 2e-17
Identities = 61/192 (31%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 24 LAASTKSVEEIGRDT-PLLGVPLTVKESVAVKGCSNNAGRIKPK-ERIATDDAETVRLLR 81
L A ++E PL GVP VK+++ V G A P DA V LR
Sbjct: 52 LLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAA--CPAFAYTPERDATVVARLR 109
Query: 82 QAGAIILCVTNTPELCMNWETFNKATGT--TNNPY-------DTRRTPGGSSGGEAALLS 132
AGAI++ TN + F ATG T +PY D GGSS G A ++
Sbjct: 110 AAGAIVIGKTNL-------DQF--ATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVA 160
Query: 133 SGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLAR 192
G + +D AGS R+PA F + G KP+ G +S G +P+ T + + A
Sbjct: 161 LGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACR-----TLDCVSVFAL 215
Query: 193 YAEDLPLVLHLM 204
+D VL +M
Sbjct: 216 TVDDADAVLAVM 227
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 81.6 bits (202), Expect = 2e-17
Identities = 58/166 (34%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 13 ALEEAKQVDILLAASTKSVEEIGRDTPLL-GVPLTVKESVAVKGCSNNAG-RIKPKERIA 70
A+ EA+ AS+ GR LL G+P+ K+ V G AG + A
Sbjct: 50 AMREAE-------ASSARWRA-GRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLANAAPA 101
Query: 71 TDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPY--DTRRTPGGSSGGEA 128
+ DA V LL +AG + + TN E + N GT NP D R PGGSS G A
Sbjct: 102 SRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSA 161
Query: 129 ALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP 174
+++G V + +D GS RIPA F G+ G+K + G S G P
Sbjct: 162 VAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFP 207
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 77.2 bits (190), Expect = 6e-16
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 37 DTPLLGVPLTVKESVAVKGCSNNAGRIKP----KERIATDDAETVRLLRQAGAIILCVTN 92
D PL G+ VK+ V+G G P AT A V + + GA + T
Sbjct: 24 DLPLHGLTFAVKDIFDVEGYVTGFG--NPDWARTHSAATSTAPAVLAVLRGGATCVGKTI 81
Query: 93 TPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIV--GVASDIAGSCRI 150
E+ + N GT NP R PGGSS G A ++ GA +V + +D GS R+
Sbjct: 82 MDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSA--VAVGAKLVDFSLGTDTGGSVRV 139
Query: 151 PAMFTGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMI 205
PA + G+FG +PS G VS VG +P M ++ T+G AR L V H+++
Sbjct: 140 PASYCGIFGFRPSHGAVSTVGVIP-----MAQSFDTVGWFARDPVILKRVGHVLL 189
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 75.8 bits (186), Expect = 2e-15
Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 1 MLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNA 60
LNA+ + + + EA+Q+D E + L G+P+ +K+++ K +A
Sbjct: 201 NLNAITEINPTI-IAEAEQLD---------KENTTNKSALYGMPVLLKDNIGTKELPTSA 250
Query: 61 GRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWET-----FNKATGTTNNPYD 115
G + K+ + DA V L+ GA+IL TN E + ++ G + NPY
Sbjct: 251 GTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYS 310
Query: 116 TRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPS 175
+ P GSS G A +S + + + ++ GS PA G+KPS G V+N G +P
Sbjct: 311 SNLDPSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPL 370
Query: 176 SEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQ 210
S + + T G L R D L + + +
Sbjct: 371 S-----SRFDTPGPLTRTVNDAYLTTNALTNTTSN 400
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 72.8 bits (179), Expect = 2e-14
Identities = 70/276 (25%), Positives = 114/276 (41%), Gaps = 18/276 (6%)
Query: 10 FNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRIKPKERI 69
F ALEE K D A S E+ +D PL T+K++ A +A +
Sbjct: 8 FQKALEELKN-DKNNAVSYVFDEKNNKDGPLANCVFTIKDNFATSEGPTHASSKSLENFK 66
Query: 70 ATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAA 129
+ +A V+ L AGA + + EL + A G NP D+ + GGSS G AA
Sbjct: 67 PSYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAA 126
Query: 130 LLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP--SSEDKMWNTYFTI 187
+ S + SD S R+PA F G G KPS G +S G SS D T+
Sbjct: 127 TFNKNISF-AIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLD-------TV 178
Query: 188 GLLARYAEDLPLVLHLMI-SDREQAKSLRLLEPVIVQDIKVFYMEDDGSCTLTDGVDLDI 246
D ++ ++ D S+ V + ++K + ++ +
Sbjct: 179 AYFTHNVNDAIILSKVLFGKDENDLTSVD----VKINNVKKTKPKKVAYLDCFKELEEYV 234
Query: 247 KEGIRKAVHHLEYKQGIKAQKVNIDLEDVFELVSMV 282
+ +K ++ L+ + I+ +K+ ID E + + + V
Sbjct: 235 AKKYKKLINILK-SENIEVEKIKID-EKLLKAIKPV 268
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 70.6 bits (173), Expect = 1e-13
Identities = 63/176 (35%), Positives = 84/176 (47%), Gaps = 11/176 (6%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
LNAVV R AL+EA+ D A E +G PL G+P T K+S VKG + +G
Sbjct: 46 LNAVV-VRNPDALKEAEASD----ARRARGETLG---PLDGIPYTAKDSYLVKGLTAASG 97
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELC---MNWETFNKATGTTNNPYDTRR 118
K+ +A DA T+ LR AGAI L TN P + M + +A N Y T
Sbjct: 98 SPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQRGVYGRAESPYNAAYLTAP 157
Query: 119 TPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP 174
GSS G ++ S G+A + S R PA G+ + PS G +S G+ P
Sbjct: 158 FASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWP 213
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 30.2 bits (69), Expect = 1.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 216 LLEPVIVQDIKVFYMEDDGSCTLTDGVDLDIKEG 249
LLE V+++ V + D G DGV ++K+G
Sbjct: 1 LLE---VKNLSVSFPTDAGVVKAVDGVSFELKKG 31
>gnl|CDD|153086 cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related
enzymes. This family includes pyruvate formate lyase 2
(PFL2), B12-independent glycerol dehydratase (DhaB) and
the alpha subunit of benzylsuccinate synthase (BssA),
all of which have a highly conserved ten-stranded
alpha/beta barrel domain, which is similar to those of
PFL1 (pyruvate formate lyase 1) and RNR (ribonucleotide
reductase). Pyruvate formate lyase catalyzes a key step
in anaerobic glycolysis, the conversion of pyruvate and
CoenzymeA to formate and acetylCoA. DhaB catalyzes the
first step in the conversion of glycerol to
1,3-propanediol while BssA catalyzes the first step in
the anaerobic mineralization of both toluene and
m-xylene.
Length = 781
Score = 30.3 bits (69), Expect = 1.4
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 259 YKQGIKAQKVNIDLEDVFELVSMVLLKMNGINCPYQE 295
YKQ I+ + E EL+ + +K+N IN
Sbjct: 287 YKQDIEEG--RLTREGAIELLECLWIKINEINKVRSG 321
>gnl|CDD|214406 MTH00028, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 297
Score = 30.0 bits (67), Expect = 1.5
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 130 LLSSGASIVGVASDIAGSCRIPAMFTG---VFGHKPSPGFVSNVGHMPSSEDKMWNTYFT 186
LLSSGA++ I G+ ++ G + G PS G + P+ + T
Sbjct: 137 LLSSGATVTWAHHAIIGTGNPASLEKGTQGIEGPNPSNGAPPDPQKGPTFLLSDFRTNAV 196
Query: 187 IGLL 190
IGLL
Sbjct: 197 IGLL 200
>gnl|CDD|234237 TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC
family. The protein SO_1778 (MtrC) of Shewanella
oneidensis MR-1, and its paralog SO_1779 (OmcA), with
which it intteracts, are large decaheme proteins, about
900 amino acids in length, involved in the use of
manganese [Mn(III/IV)] and iron [Fe(III)] as terminal
electron acceptors. This model represents these and
similar decaheme proteins, found also in Rhodoferax
ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966,
and a few other bacterial species [Energy metabolism,
Electron transport].
Length = 659
Score = 29.4 bits (66), Expect = 2.7
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 49 ESVAVKGCSNNAGRIKPKERIATDDAE------TVRLLRQAGAII--------LCVTNTP 94
+V +N A K K ++ A TV++ AG I +T
Sbjct: 308 HTVHAGTLANLAAAYKVKAVVSAIAAAGKAPTVTVQVTDPAGGPIALDTITDTKFITPRL 367
Query: 95 ELCMNWETFNKATGTTNNPYDTRRTPGGS 123
L +NW T A GTT D+ G
Sbjct: 368 SLYVNWGTDGVANGTTVYSRDSINGNGSD 396
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 28.6 bits (64), Expect = 5.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 205 ISDREQAKSLRLLEPVI-VQDIKVFYME-DDGSCTLTDGVDLDIKEG 249
+S+ E+ + + EP+I V+++ Y+ D G D V L++KEG
Sbjct: 264 VSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG 310
>gnl|CDD|153239 cd03145, GAT1_cyanophycinase, Type 1 glutamine amidotransferase
(GATase1)-like domain found in cyanophycinase. Type 1
glutamine amidotransferase (GATase1)-like domain found
in cyanophycinase. This group contains proteins similar
to the extracellular cyanophycinases from Pseudomonas
anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803
CphB. Cyanophycinases are intracellular exopeptidases
which hydrolyze the polymer cyanophycin (multi
L-arginyl-poly-L-aspartic acid) to the dipeptide
beta-Asp-Arg. Cyanophycinase is believed to be a
serine-type exopeptidase having a Ser-His-Glu catalytic
triad which differs from the Cys-His-Glu catalytic triad
typical of GATase1 domains by having a Ser in place of
the reactive Cys at the nucleophile elbow.
Length = 217
Score = 28.0 bits (63), Expect = 5.9
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 13/136 (9%)
Query: 4 AVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGRI 63
A++ A ++ ++ AAS + E+G + + L +E +
Sbjct: 16 AILQRFVARAGGAGARIVVIPAASEEP-AEVGEEYRDVFERLGARE----------VEVL 64
Query: 64 KPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGS 123
R A +D E V LR A I + + Y GG+
Sbjct: 65 VIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGG-TPLLDALRKVYRGGVVIGGT 123
Query: 124 SGGEAALLSSGASIVG 139
S G AA++S G
Sbjct: 124 SAG-AAVMSDTMIAGG 138
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 27.5 bits (62), Expect = 8.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 216 LLEPVIVQDIKVFYMEDDGSCTLTDGVDLDIKEG 249
LLE V+++ V + GS D V IK+G
Sbjct: 1 LLE---VKNLSVSFPTGGGSVKALDDVSFSIKKG 31
>gnl|CDD|220673 pfam10280, Med11, Mediator complex protein. Mediator is a large,
modular protein complex that is conserved from yeast to
human and conveys regulatory signals from DNA-binding
transcription factors to RNA polymerase II. Not only are
the polypeptides conserved but the structural
organisation is also largely conserved. One or two
subunits are either fungal or vertebral specific but
Med11 is one of the subunits that is conserved from
fungi to humans. Med11 appears to be necessary for the
full and successful assembly of the core head
sub-region.
Length = 113
Score = 26.5 bits (59), Expect = 8.6
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 67 ERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKAT 107
+ + D + V LL+ AG +I ++ + E F T
Sbjct: 6 QSLNEIDKKIVSLLQSAGQVIEELSKEKSGESSKEQFESHT 46
>gnl|CDD|237310 PRK13222, PRK13222, phosphoglycolate phosphatase; Provisional.
Length = 226
Score = 27.5 bits (62), Expect = 9.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 74 AETVRLLRQAGAIILCVTNTPE 95
ET+ L+ AG + VTN P
Sbjct: 99 KETLAALKAAGYPLAVVTNKPT 120
>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein. The CorA
transport system is the primary Mg2+ influx system of
Salmonella typhimurium and Escherichia coli. CorA is
virtually ubiquitous in the Bacteria and Archaea. There
are also eukaryotic relatives of this protein. The
family includes the MRS2 protein from yeast that is
thought to be an RNA splicing protein. However its
membership of this family suggests that its effect on
splicing is due to altered magnesium levels in the cell.
Length = 291
Score = 27.3 bits (61), Expect = 9.7
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 150 IPAMF-TGVFGHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLA 191
+P TG++G N MP + + F I L
Sbjct: 244 LPLTLITGIYG--------MNFKGMPELDWP-YGYPFWIVLGL 277
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,674,758
Number of extensions: 1513938
Number of successful extensions: 1581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1529
Number of HSP's successfully gapped: 48
Length of query: 304
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 208
Effective length of database: 6,679,618
Effective search space: 1389360544
Effective search space used: 1389360544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)