RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15831
(304 letters)
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 249 bits (638), Expect = 5e-79
Identities = 71/295 (24%), Positives = 120/295 (40%), Gaps = 29/295 (9%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
N V + + ++ R L GVP+++KE + KG + G
Sbjct: 105 TNCVTSYLTDCETQLSQ---------------APRQGLLYGVPVSLKECFSYKGHDSTLG 149
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
+ + D V++L+ GA+ TN P+ +++ N G T NP+ + ++PG
Sbjct: 150 LSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPG 209
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMW 181
GSSGGE AL+ SG S +G+ +DI GS R P+ F G+ G KP+ +S G
Sbjct: 210 GSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCV-YGQT 268
Query: 182 NTYFTIGLLARYAEDLPLVLHLMISDREQAK-------SLRLLEPVIVQDIKVFYMEDDG 234
++G +AR E L L L ++ + R + ++V Y E D
Sbjct: 269 AVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN 328
Query: 235 SCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNI-DLEDVFELVSMVLLKMNG 288
++ + + LE G ++ E++S L +G
Sbjct: 329 YTM----PSPAMRRALIETKQRLE-AAGHTLIPFLPNNIPYALEVLSTGGLFSDG 378
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 182 bits (465), Expect = 3e-54
Identities = 72/268 (26%), Positives = 108/268 (40%), Gaps = 31/268 (11%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAV-KGCSNNA 60
+NAV+ F A E++ P GVP +K+ V +G N +
Sbjct: 42 INAVIIPLFEKARRESELAS----------------GPFAGVPYLLKDLTVVSQGDINTS 85
Query: 61 G-RI-KPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRR 118
+ K A DA V+ +R AG ++L TNTPE+ T +A G T NP++ R
Sbjct: 86 SIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGR 145
Query: 119 TPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSED 178
+ GGSSGG A +++ S V +D AG+ RIPA GV G KP+ G +S + S+
Sbjct: 146 SVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSD- 204
Query: 179 KMWNTYFTIGLLARYAEDLPLVLHLMI-SDREQAKSLRLLEPVIVQDI-------KVFYM 230
GL AR D+ +L ++ Q I +V +
Sbjct: 205 -NVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVL 263
Query: 231 EDDGSCTLTDGVDLDIKEGIRKAVHHLE 258
+ +D + R A L
Sbjct: 264 TH--NPVGDFALDPECAAAARGAAAALA 289
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 143 bits (362), Expect = 1e-39
Identities = 75/274 (27%), Positives = 113/274 (41%), Gaps = 34/274 (12%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
NA+ A +EA + L + G PL G+PLTVK+ VKG AG
Sbjct: 34 RNALAYLDEEAARKEALALTEELRRG----QVRG---PLHGLPLTVKDLFPVKGMPTRAG 86
Query: 62 -RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTP 120
+ ++A VR LR+AGA++ TN E+ + N TG N D R
Sbjct: 87 TKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQA 144
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP--SSED 178
GGSSGG A ++ G + + +D GS RIPA F GV G KPS G VS G +P S D
Sbjct: 145 GGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTD 204
Query: 179 KMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPVIVQDIKVFYMEDDGSCTL 238
G L R D + ++ + + ++ + D L
Sbjct: 205 -------HAGPLTRSVRDAHFLTEILAGESIPLEGVQNPVFGVPLD------------FL 245
Query: 239 TDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDL 272
+ +++++ + + L A+ + L
Sbjct: 246 EGRLGVEVRKAFTRLLEDLP-ALR--AEVREVSL 276
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 133 bits (337), Expect = 3e-36
Identities = 60/243 (24%), Positives = 95/243 (39%), Gaps = 30/243 (12%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAG-RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELC 97
PL G+ + +K+ + G I + DA V +L++AGA I+ T T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIY-RGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 98 MNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGV 157
T NP++T +PGG+S G AA + +G + + + GS PA + G
Sbjct: 112 SR------DPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 158 FGHKPSPGFVSNVGHMP--SSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLR 215
KPS + VG + D T+GL AEDL L M E + +
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALD-------TVGLFGARAEDLARGLLAMTGRSEFSGIVP 218
Query: 216 LLEPVIVQDIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDLEDV 275
P I ++ V+ ++G++ A+ E + G A IDL +
Sbjct: 219 AKAPRI-----GVVRQEFA-----GAVEPAAEQGLQAAIKAAE-RAG--ASVQAIDLPEA 265
Query: 276 FEL 278
Sbjct: 266 VHE 268
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 134 bits (339), Expect = 6e-36
Identities = 73/291 (25%), Positives = 111/291 (38%), Gaps = 43/291 (14%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGC-SNNA 60
A+ A + + L A + D L G + +K++V V G N
Sbjct: 51 EATPPTTSREHAVPSASE-NPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNG 109
Query: 61 GRI----KPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDT 116
R P DA V L AGA + +LC + +F A+G NP+D
Sbjct: 110 SRTVEGFTPSR-----DATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDR 164
Query: 117 RRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMP-- 174
+R GGSSGG AAL+++G + D GS RIPA F GV GHKP+ G V G P
Sbjct: 165 QREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIE 224
Query: 175 SSEDKMWNTYFTIGLLARYAEDLPLVLHLMIS-DREQAKSLRLLEPV-----IVQDIKVF 228
+ D +G + R D L+L ++ D + +E + D+
Sbjct: 225 RTIDH-------LGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGL 277
Query: 229 -------YMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDL 272
S ++ + +R A H L + G +++
Sbjct: 278 RIGIVREGFGHAVS-------QPEVDDAVRAAAHSLT-EIG--CTVEEVNI 318
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 129 bits (328), Expect = 1e-34
Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 39/285 (13%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
+ + + A+++A+++D L A + G L G+P+ +K+++ G
Sbjct: 40 IKSFLALDKENAIKKAQELDELQAKD----QMDG---KLFGIPMGIKDNIITNGLETTCA 92
Query: 62 -RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTP 120
++ + + ++ + L + A+++ N E M T T NP+D + P
Sbjct: 93 SKML-EGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVP 151
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVG--HMPSSED 178
GGSSGG AA +++G + + SD GS R PA + GV G KP+ G VS G SS D
Sbjct: 152 GGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLD 211
Query: 179 KMWNTYFTIGLLARYAEDLPLVLHLMIS-DREQAKSLRLLEP----VIVQDIKVFYMEDD 233
IG L R +D +VL + D + S + + I +DIK
Sbjct: 212 -------QIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIK------- 257
Query: 234 G------SCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDL 272
G L +GV D+KE ++ AV L+ G A + L
Sbjct: 258 GLKVALPKEYLGEGVADDVKEAVQNAVETLK-SLG--AVVEEVSL 299
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 127 bits (321), Expect = 1e-33
Identities = 83/285 (29%), Positives = 130/285 (45%), Gaps = 45/285 (15%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
+ A + + AL++A+ + R+ PL G+P+ VK+++ V+G
Sbjct: 39 VKAYITPLYGKALKQAESLK-------------ERELPLFGIPIAVKDNILVEGEKTTCA 85
Query: 62 -RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTP 120
+I + +A DA + L++AGA+I+ TN E M T A T NP+D R P
Sbjct: 86 SKIL-ENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVP 144
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVG--HMPSSED 178
GGSSGG AA ++ ++ V + SD GS R PA F GV G KP+ G VS G SS D
Sbjct: 145 GGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLD 204
Query: 179 KMWNTYFTIGLLARYAEDLPLVLHLMIS-DREQAKSLRLLEP----VIVQDIKVFYMEDD 233
IG+ R ED+ LVL ++ D + + S ++ P + +++K
Sbjct: 205 -------QIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSEEVKKEVK------- 250
Query: 234 G------SCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDL 272
G + +KE + LE K+G + + L
Sbjct: 251 GLKIGLPKEFFEYELQPQVKEAFENFIKELE-KEG--FEIKEVSL 292
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 125 bits (317), Expect = 5e-33
Identities = 66/213 (30%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 2 LNAV--VDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNN 59
L AV ++ AL+EA + D G PL G+PL +K+++ + +
Sbjct: 48 LRAVIELNPD---ALKEAAERDRERRDG----RLRG---PLHGIPLLLKDNINAAPMATS 97
Query: 60 AG-RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCM-----NWETFNKATGTTNNP 113
AG + DDA VR LR AGA++L TN E + ++ G T NP
Sbjct: 98 AGSLAL--QGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNP 155
Query: 114 YDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHM 173
Y +P GSS G A +++ + V + ++ GS PA GV G KP+ G VS G +
Sbjct: 156 YRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGII 215
Query: 174 P--SSEDKMWNTYFTIGLLARYAEDLPLVLHLM 204
P S+D T G +AR D VL +
Sbjct: 216 PISFSQD-------TAGPMARSVADAAAVLTAI 241
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 121 bits (305), Expect = 2e-31
Identities = 82/287 (28%), Positives = 121/287 (42%), Gaps = 53/287 (18%)
Query: 2 LNA--VVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNN 59
L A ++ER LEEA+ VD PL G+ + VK+++A +G
Sbjct: 35 LGAFLSLNER---LLEEAEAVD--------------PGLPLAGLVVAVKDNIATRGLRTT 77
Query: 60 AG-RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRR 118
AG R+ + + +A V L+ GA++L TN E M T + A T NP+D R
Sbjct: 78 AGSRLL-ENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDR 136
Query: 119 TPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVG--HMPSS 176
PGGSSGG AA L++ + + + SD GS R PA F GV+G KP+ G VS G SS
Sbjct: 137 VPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASS 196
Query: 177 EDKMWNTYFTIGLLARYAEDLPLVLHLMIS-DREQAKSLRL---LEPVIVQDIKVF---- 228
D IG +AR DL L++ D A SL L + + +
Sbjct: 197 LD-------QIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGV 249
Query: 229 ---YMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDL 272
+ G ++ + +A+ + G +
Sbjct: 250 VREALA---------GNSPGVERALEEALKVFR-ELG--LSVREVSW 284
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 117 bits (295), Expect = 5e-30
Identities = 69/286 (24%), Positives = 118/286 (41%), Gaps = 55/286 (19%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
+ A + R N+++E+ G+P+ +K+++ G
Sbjct: 41 VKAFISVRENVSVEKKG--------------------KFWGIPVAIKDNILTLGMRTTCA 80
Query: 62 -RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTP 120
RI + + DA V+ +++AG +++ N E M T A T NP+D R P
Sbjct: 81 SRIL-ENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVP 139
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVG--HMPSSED 178
GGSSGG AA +S+G + + SD GS R PA GV G+KP+ G VS G SS D
Sbjct: 140 GGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLD 199
Query: 179 KMWNTYFTIGLLARYAEDLPLVLHLMIS-DREQAKSLRLLEPV-----IVQDIKVFYMED 232
+ IG + + D +++ ++ D A ++ V I + +
Sbjct: 200 Q-------IGPITKTVRDAAILMEIISGRDENDATTVN--RKVDFLSEIEEGVS------ 244
Query: 233 DG------SCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDL 272
G ++ + E +A+ LE + G A+ + +
Sbjct: 245 -GMKFAVPEEIYEHDIEEGVSERFEEALKLLE-RLG--AKVERVKI 286
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 45/226 (19%), Positives = 69/226 (30%), Gaps = 110/226 (48%)
Query: 1 MLNAVVD----------ERFNLALEEAKQVDILLAASTKSVEEIGRDT------P--LLG 42
ML ++ + + N L KQV+I L G P L G
Sbjct: 338 ML-SISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--------NGAKNLVVSGPPQSLYG 388
Query: 43 VPLTVKESVAVKGCSNNAGRI-----KPK---------------------ERIATD---- 72
+ LT++++ A G + RI K K + I D
Sbjct: 389 LNLTLRKAKAPSGLDQS--RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 73 -----------------DAETVRLLRQ--AGAIILCVTNTPELCMNWE--TFNKAT---- 107
D +R+L + I+ C+ P + WE T KAT
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP---VKWETTTQFKATHILD 503
Query: 108 -GTTNNPYDTRRTPGGSSGGEAALLS-----SGASIVGVASDIAGS 147
G PGG+S G L +G ++ +AG+
Sbjct: 504 FG-----------PGGAS-GLGVLTHRNKDGTGVRVI-----VAGT 532
Score = 38.9 bits (90), Expect = 0.002
Identities = 43/270 (15%), Positives = 80/270 (29%), Gaps = 98/270 (36%)
Query: 87 ILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVAS---- 142
++ V +L ++ K G T P + R G++G L++ A +
Sbjct: 240 LIGVI---QLA-HYVVTAKLLGFT--PGELRSYLKGATGHSQGLVT--AVAIAETDSWES 291
Query: 143 --DIAGSCRIPAMF-TGVFGHK----------------------PSPGF-VSNV------ 170
I +F GV ++ PSP +SN+
Sbjct: 292 FFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 171 -------GHMPSSEDKMWNTYFTIGL--------LARYAEDL-PLVLHL----MISDREQ 210
H+P+ + I L ++ + L L L L S +Q
Sbjct: 351 DYVNKTNSHLPAGKQ------VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 211 AK----------SLRLLEPVIVQDIKVF---YMEDDGSCTLTD----GVDLDIKEGIRKA 253
++ S R L PV F + D V + K+ I+
Sbjct: 405 SRIPFSERKLKFSNRFL-PVAS----PFHSHLLVPASDLINKDLVKNNVSFNAKD-IQIP 458
Query: 254 VHHLEYKQGIKAQKVNIDLEDVFELVSMVL 283
V+ G + ++ + +V ++
Sbjct: 459 VYDTF--DGSDLRVLSGSI--SERIVDCII 484
Score = 35.4 bits (81), Expect = 0.024
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 59/172 (34%)
Query: 151 PAMFT---GVF------GHKPSPGFVSNVGHMPSS--EDKMWNTYFTIGLLARYAEDLPL 199
PA+ F G P+ + GH S E Y LA A+ + +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFA--GH---SLGE------Y---AALASLADVMSI 1779
Query: 200 VLHLMISDREQAKSL-----RLLEPVIVQDIKVFYMEDDGSCTLTDG---VDLDIKEGIR 251
E + ++ + +D + G + G +E ++
Sbjct: 1780 ---------ESLVEVVFYRGMTMQVAVPRDELG--RSNYGMIAINPGRVAASFS-QEALQ 1827
Query: 252 KAVHHLEYKQGIKAQKVN---------I--DLEDVFELVSMVL--LKMNGIN 290
V + + G + VN DL + + V+ VL +K+ I+
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-DTVTNVLNFIKLQKID 1878
>2q83_A YTAA protein; 2635576, structural genomics, joint center for
structu genomics, JCSG, protein structure initiative,
PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus
subtilis}
Length = 346
Score = 30.3 bits (68), Expect = 0.71
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 246 IKEGIRKAVHHLEYKQGIKA-QKVNIDLEDV-FELVSMVLLKMNGINCP 292
I+ V + G ++++ + F + + L G+N P
Sbjct: 40 IQGNQMALVWKVHTDSGAVCLKRIHRPEKKALFSIFAQDYLAKKGMNVP 88
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 29.8 bits (68), Expect = 1.0
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 9/40 (22%)
Query: 218 EPVIVQD----IKVFYM---EDDGSCTLTDGVDLDIKEGI 250
P V IK FYM +D D+ EG
Sbjct: 318 RPFFVYGYPKHIKAFYMKEDPNDP--RKVLASDMLAPEGY 355
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.8
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 17/75 (22%)
Query: 8 ERFNLALEE-----AKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAGR 62
E L+E + K +EE + E V K NN R
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ---------SEQVE-KNKINN--R 139
Query: 63 IKPKERIATDDAETV 77
I K DA+ +
Sbjct: 140 IADKAFYQQPDADII 154
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 28.3 bits (64), Expect = 3.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Query: 218 EPVIVQD----IKVFYM---EDDGSCTLTDGVDL 244
+P+++ IK FYM D TLT+ VDL
Sbjct: 320 KPILLNRFPSEIKAFYMQRDAQDN--TLTESVDL 351
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 28.0 bits (63), Expect = 4.1
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 218 EPVIVQD----IKVFYM---EDDGSCTLTDGVDL 244
P+ + +K FYM LT+ VDL
Sbjct: 341 CPIFMIHFPSKMKAFYMSKVPGHP--DLTESVDL 372
>3lso_A Putative membrane anchored protein; MCSG, PSI-2, structural genomic
protein structure initiative; HET: MLZ; 2.75A
{Corynebacterium diphtheriae} PDB: 3lso_B*
Length = 489
Score = 27.9 bits (60), Expect = 4.9
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 121 GGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSP 164
++G + + + D +GS I A F G+ P+P
Sbjct: 233 HIAAGDPVPVTEDNXASTSIIFDTSGSKTITARFIDAEGYNPAP 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 5.2
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 21/100 (21%)
Query: 214 LRLLEPVIVQDIKVFYMEDDGSCTLTDG-VDLDI------KEGIRKAVHHLEYKQGIKAQ 266
L + E V + ++D L+ +D I G + L KQ Q
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 267 K-VNIDLEDVFE-LVSMVLLKMNGINCPYQEDDEHPEFNY 304
K V L ++ L+S P + + P
Sbjct: 81 KFVEEVLRINYKFLMS-----------PIKTEQRQPSMMT 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,782,483
Number of extensions: 295393
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 28
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)