RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15831
(304 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 134 bits (338), Expect = 1e-36
Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 27/286 (9%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
+ + + A+++A+++D L A D L G+P+ +K+++ G
Sbjct: 40 IKSFLALDKENAIKKAQELDELQAKDQ-------MDGKLFGIPMGIKDNIITNGLETTCA 92
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
+ + ++ + L + A+++ N E M T T NP+D + PG
Sbjct: 93 SKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPG 152
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMW 181
GSSGG AA +++G + + SD GS R PA + GV G KP+ G VS G +
Sbjct: 153 GSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVA-----FA 207
Query: 182 NTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPVI--------VQDIKVFYMEDD 233
++ IG L R +D +VL + + ++ V ++ +KV ++
Sbjct: 208 SSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEY 267
Query: 234 GSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDLEDVFELV 279
+GV D+KE ++ AV L+ G A + L + +
Sbjct: 268 L----GEGVADDVKEAVQNAVETLK-SLG--AVVEEVSLPNTKFGI 306
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 122 bits (306), Expect = 3e-32
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 31/282 (10%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
+ A + R N+++E+ G+P+ +K+++ G
Sbjct: 40 VKAFISVRENVSVEKKG--------------------KFWGIPVAIKDNILTLGMRTTCA 79
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
+ + DA V+ +++AG +++ N E M T A T NP+D R PG
Sbjct: 80 SRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPG 139
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMW 181
GSSGG AA +S+G + + SD GS R PA GV G+KP+ G VS G +
Sbjct: 140 GSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVA-----FA 194
Query: 182 NTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPVIVQDIKV---FYMEDDGSCTL 238
++ IG + + D +++ ++ E + + + +I+
Sbjct: 195 SSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIY 254
Query: 239 TDGVDLDIKEGIRKAVHHLEYKQGIKAQKVNIDLEDVFELVS 280
++ + E +A+ LE + G A+ + + + V+
Sbjct: 255 EHDIEEGVSERFEEALKLLE-RLG--AKVERVKIPHIKYSVA 293
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 87.1 bits (214), Expect = 9e-20
Identities = 62/280 (22%), Positives = 113/280 (40%), Gaps = 16/280 (5%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
N V + + ++ R L GVP+++KE + KG + G
Sbjct: 75 TNCVTSYLTDCETQLSQA---------------PRQGLLYGVPVSLKECFSYKGHDSTLG 119
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPG 121
+ + D V++L+ GA+ TN P+ ++++ N G T NP+ + ++PG
Sbjct: 120 LSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPG 179
Query: 122 GSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSSEDKMW 181
GSSGGE AL+ SG S +G+ +DI GS R P+ F G+ G KP+ +S G
Sbjct: 180 GSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKG-CVYGQT 238
Query: 182 NTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPVIVQDIKVFYMEDDGSCTLTDG 241
++G +AR E L L L ++ + + +++ TD
Sbjct: 239 AVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN 298
Query: 242 VDLDIKEGIRKAVHHLEYKQGIKAQKVNIDLEDVFELVSM 281
+ R + + + + ++ + +
Sbjct: 299 YTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEV 338
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 85.6 bits (210), Expect = 2e-19
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 2 LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKGCSNNAG 61
L AV++ + AL+EA + D G PL G+PL +K+++ + +AG
Sbjct: 44 LRAVIELNPD-ALKEAAERDRERRDG----RLRG---PLHGIPLLLKDNINAAPMATSAG 95
Query: 62 RIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCMN-----WETFNKATGTTNNPYDT 116
+ DDA VR LR AGA++L TN E ++ G T NPY
Sbjct: 96 -SLALQGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRI 154
Query: 117 RRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVFGHKPSPGFVSNVGHMPSS 176
+P GSS G A +++ + V + ++ GS PA GV G KP+ G VS G +P S
Sbjct: 155 SHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPIS 214
Query: 177 EDKMW 181
+
Sbjct: 215 FSQDT 219
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 53.6 bits (127), Expect = 9e-09
Identities = 48/171 (28%), Positives = 68/171 (39%), Gaps = 11/171 (6%)
Query: 39 PLLGVPLTVKESVAVKGCSNNAGRIKPKERIATDDAETVRLLRQAGAIILCVTNTPELCM 98
PL G+ + +K+ + G + DA V +L++AGA I+ T T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS 112
Query: 99 NWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIAGSCRIPAMFTGVF 158
T T NP++T +PGGSS G AA + +G + + + GS PA + G
Sbjct: 113 RDPT------ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTA 166
Query: 159 GHKPSPGFVSNVGHMPSSEDKMWNTYFTIGLLARYAEDLPLVLHLMISDRE 209
KPS + VG S F AEDL L M E
Sbjct: 167 AIKPSFRMLPTVGVKCYSWALDTVGLF-----GARAEDLARGLLAMTGRSE 212
>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 224
Score = 27.7 bits (60), Expect = 1.3
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 86 IILCVTNTPELCMNWETFNKATGTTNNPYDTRRTPGGSSGGEAALLSSGASIVGVASDIA 145
+ L + + K +P R G SGG L G+ S
Sbjct: 144 VELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGP---LLCAGVAHGIVSYGH 200
Query: 146 GSCRIPAMFTGVFGHKP 162
+ PA+FT V + P
Sbjct: 201 PDAKPPAIFTRVSTYVP 217
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 27.1 bits (59), Expect = 2.4
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 163 SPGFVSNVGHMPSSEDK--MWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLRLLEPV 220
+ GFV V + + + + + LP+ + +S + A + + V
Sbjct: 167 ATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQAAVADGV 226
Query: 221 IVQDIKVFYMEDDGSCTLTDGVDLDIKEGIRKAVHHLEYKQGIKA 265
+V V +E+ S L + +I++G+++ + K+ K
Sbjct: 227 VVGSALVRALEEGRS--LAPLLQ-EIRQGLQRLEANPGLKESSKK 268
>d2jdca1 d.108.1.1 (A:2-146) Probable acetyltransferase YitI
{Bacillus licheniformis [TaxId: 1402]}
Length = 145
Score = 25.9 bits (56), Expect = 4.7
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 270 IDLEDVFELVSMVLLKMNGIN-CPYQEDDEH 299
I+ ED +EL +L I C ++ D
Sbjct: 6 INAEDTYELRHRILRPNQPIEACMFESDLLR 36
>d1mtyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
subunit {Methylococcus capsulatus [TaxId: 414]}
Length = 162
Score = 25.6 bits (56), Expect = 5.1
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 225 IKVFYMEDDGSCTLTDGVDLD---IKEGIRKAVHHLEYKQGIKAQKVN--IDLEDVFELV 279
+K F M+ + +D D I+ + + V L+ + + + ED ++
Sbjct: 29 LKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVL 88
Query: 280 SMVLLKMNGINCPYQEDDEHPEF 302
+ KMN ++ + H F
Sbjct: 89 DGTVAKMNAAKDKWEAEKIHIGF 111
>d1mhyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
subunit {Methylosinus trichosporium [TaxId: 426]}
Length = 167
Score = 25.6 bits (56), Expect = 5.3
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 225 IKVFYMEDDGSCTLTDGVDLD---IKEGIRKAVHHLEYKQGIKAQKVN--IDLEDVFELV 279
I+ F + + +D+D I+ I + + L+ ++ A + ED +
Sbjct: 32 IQDFRLAYTSPFRKSYDIDVDYQYIERKIEEKLSVLKTEKLPVADLITKATTGEDAAAVE 91
Query: 280 SMVLLKMNGINCPYQEDDEHPEF 302
+ + K+ Y+ + H EF
Sbjct: 92 ATWIAKIKAAKSKYEAEAIHIEF 114
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 25.9 bits (56), Expect = 6.8
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 163 SPGFVSNVGHMPSSEDK--MWNTYFTIGLLARYAEDLPLVLHLMISDREQAKSLR 215
S GFV V + + + ++ + + P+ + IS E K +
Sbjct: 165 SEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIA 219
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
[TaxId: 562]}
Length = 759
Score = 25.9 bits (57), Expect = 7.6
Identities = 7/32 (21%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 259 YKQGIKAQKVNIDLEDVFELVSMVLLKMNGIN 290
++ +KA K I ++ E+V +++K+ +
Sbjct: 287 IERDLKAGK--ITEQEAQEMVDHLVMKLRMVR 316
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.4 bits (55), Expect = 9.5
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 220 VIVQDIKVFYMEDDGSCTLTDGVDLDIKEG 249
+IV+++ + G D V+++I+ G
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENG 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0402 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,132,691
Number of extensions: 52620
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 15
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.1 bits)