BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15832
         (2157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
            Hexagonal Crystal Form
 pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
 pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
 pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
 pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
 pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
            Monoclinic Crystal Form
 pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
            Monoclinic Crystal Form
          Length = 481

 Score = 38.5 bits (88), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVG 1662
            +D+  ++TI S+D + K V ++  V + QL +  +P G  +PV+     VTVG
Sbjct: 92   IDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVG 144


>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
 pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
 pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
          Length = 403

 Score = 37.7 bits (86), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVG 1662
            +D+ A++ I S+D   + V V+  V++ QL +  +P G  +PV+     VTVG
Sbjct: 14   IDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVG 66


>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
            Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
            Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
 pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With Fad
            And Covalently Bound Btz043
          Length = 468

 Score = 37.7 bits (86), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVG 1662
            +D+ A++ I S+D   + V V+  V++ QL +  +P G  +PV+     VTVG
Sbjct: 79   IDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVG 131


>pdb|2BL6|A Chain A, Solution Structure Of The Zn Complex Of Eiav Ncp11(22-58)
            Peptide, Including Two Cchc Zn-Binding Motifs
          Length = 37

 Score = 33.1 bits (74), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 16/35 (45%)

Query: 1863 CYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRA 1897
            CY C K GH S  C  P +C  C  P      CR+
Sbjct: 3    CYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRS 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,043,161
Number of Sequences: 62578
Number of extensions: 2445916
Number of successful extensions: 4296
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4285
Number of HSP's gapped (non-prelim): 14
length of query: 2157
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2043
effective length of database: 7,839,445
effective search space: 16015986135
effective search space used: 16015986135
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)