BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15832
(2157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60HC5|DHC24_MACFA Delta(24)-sterol reductase OS=Macaca fascicularis GN=DHCR24 PE=2 SV=2
Length = 516
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 1566 HELKVK---FKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVD 1622
HE +V+ +VREW + MCTGR GW +SLR KYK + + + MD IL VD
Sbjct: 67 HEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD-ILEVD 125
Query: 1623 EEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
+K+ V+VEP VTMGQ+T L GWT+PV+ ELDD+TVG L
Sbjct: 126 TKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGL 167
>sp|Q15392|DHC24_HUMAN Delta(24)-sterol reductase OS=Homo sapiens GN=DHCR24 PE=1 SV=2
Length = 516
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 1566 HELKVK---FKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVD 1622
HE +V+ +VREW + MCTGR GW +SLR KYK + + + MD IL VD
Sbjct: 67 HEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD-ILEVD 125
Query: 1623 EEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
+K+ V+VEP VTMGQ+T L GWT+PV+ ELDD+TVG L
Sbjct: 126 TKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGL 167
>sp|Q8VCH6|DHC24_MOUSE Delta(24)-sterol reductase OS=Mus musculus GN=Dhcr24 PE=2 SV=1
Length = 516
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 1566 HELKVK---FKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVD 1622
HE +V+ +VREW + MCTGR GW +SLR KYK + + + MD IL VD
Sbjct: 67 HEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD-ILEVD 125
Query: 1623 EEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
+K+ V+VEP V+MGQ+T L GWT+PV+ ELDD+TVG L
Sbjct: 126 TKKQIVRVEPLVSMGQVTALLNSIGWTLPVLPELDDLTVGGL 167
>sp|Q5BQE6|DHC24_RAT Delta(24)-sterol reductase OS=Rattus norvegicus GN=Dhcr24 PE=2 SV=2
Length = 516
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 1566 HELKVK---FKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVD 1622
HE +V+ +VREW + MCTGR GW +SLR KYK + + + MD IL VD
Sbjct: 67 HEQRVQDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD-ILEVD 125
Query: 1623 EEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
+K+ V+VEP V+MGQ+T L GWT+PV+ ELDD+TVG L
Sbjct: 126 TKKQIVRVEPLVSMGQVTALLNSIGWTLPVLPELDDLTVGGL 167
>sp|O17397|DIML_CAEEL Diminuto-like protein OS=Caenorhabditis elegans GN=F52H2.6 PE=3 SV=1
Length = 525
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 1545 HDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIPMCTGRAGWKCMSLREPKYK 1604
H KVKH+Q Q+ +EW + + R GW MS R P YK
Sbjct: 62 HVRKVKHIQEQL------------------KEWNDNGRKSKLVNARPGWLTMSFRFPLYK 103
Query: 1605 SSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
+ + + + IL +D EK TVK EP VTMGQL++YLI RG+T+PV+ ELDD+TVG L
Sbjct: 104 ENATKIATDKLFDILDLDVEKMTVKAEPGVTMGQLSQYLISRGYTLPVLPELDDLTVGGL 163
>sp|P93472|DIM_PEA Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1
Length = 567
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 1552 VQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIP--MCTGRAGWKCMSLREPKYKSSM-F 1608
V+ + FK + H+ V+ V K + S +CT R W + +R YK + F
Sbjct: 48 VRSEWKSFKTRQKEHDENVQKVVNRLKKRNPSKDGLVCTARKPWVAVGMRNVDYKRARHF 107
Query: 1609 PVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
VDL IL +D+E+ +VEP V MGQ+TR +P + VV ELDD+TVG L
Sbjct: 108 EVDLSPFRNILDIDKERMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGL 163
>sp|Q39085|DIM_ARATH Delta(24)-sterol reductase OS=Arabidopsis thaliana GN=DIM PE=1 SV=2
Length = 561
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 1559 FKDEYQGHELKVKFKVREWIKTDQSIP--MCTGRAGWKCMSLREPKYKSSM-FPVDLEAM 1615
F+ + H+ VK ++ D S +CT R W + +R YK + F VDL
Sbjct: 56 FEKRQKEHDENVKKVIKRLKGRDASKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLGEF 115
Query: 1616 DTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
IL +++EK T +VEP V MGQ++R +P ++ VV ELDD+TVG L
Sbjct: 116 RNILEINKEKMTARVEPLVNMGQISRATVPMNLSLAVVAELDDLTVGGL 164
>sp|P21330|GAGJ_DROME Nucleic-acid-binding protein from mobile element jockey OS=Drosophila
melanogaster GN=gag PE=4 SV=1
Length = 568
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 1837 VQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCR 1896
+ RL R V+ +E A + ++QC +C FGH+ +C +C C P +
Sbjct: 368 ITRLGRYRVT----VERATRRKELLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALC 423
Query: 1897 APENVRCVNCKGDHKPTEQRCP-EMSRQKKIK 1927
+ C+NC GDH T++ CP + KK+K
Sbjct: 424 ISDVCLCINCGGDHVSTDKSCPVRAEKAKKLK 455
>sp|P21331|GAGJ_DROFU Nucleic-acid-binding protein from mobile element jockey OS=Drosophila
funebris GN=gag PE=4 SV=1
Length = 574
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 1851 IECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDH 1910
+E AP + V+QC +C FGH+ +C +C C + + CVNC GDH
Sbjct: 381 VERAPRRREVLQCLRCHIFGHSKNYCVRDPICAKCAGSHMTGSLLCTSDICMCVNCGGDH 440
Query: 1911 KPTEQRCPEMSRQKKIKEM 1929
T++ CP R +K+++M
Sbjct: 441 ASTDKDCP--VRIEKLRKM 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 791,495,247
Number of Sequences: 539616
Number of extensions: 34512401
Number of successful extensions: 135157
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 1271
Number of HSP's that attempted gapping in prelim test: 104010
Number of HSP's gapped (non-prelim): 21820
length of query: 2157
length of database: 191,569,459
effective HSP length: 133
effective length of query: 2024
effective length of database: 119,800,531
effective search space: 242476274744
effective search space used: 242476274744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)