Query psy15832
Match_columns 2157
No_of_seqs 369 out of 873
Neff 1.8
Searched_HMMs 46136
Date Fri Aug 16 22:30:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1262|consensus 100.0 6.4E-32 1.4E-36 303.0 6.1 144 1538-1702 52-198 (543)
2 PF01565 FAD_binding_4: FAD bi 99.6 4.8E-15 1E-19 141.7 6.7 115 1578-1700 21-139 (139)
3 COG0277 GlcD FAD/FMN-containin 99.5 2.6E-14 5.5E-19 157.9 7.0 96 1607-1705 76-175 (459)
4 TIGR01678 FAD_lactone_ox sugar 99.4 1.2E-12 2.5E-17 150.4 11.0 95 1607-1705 58-155 (438)
5 TIGR01679 bact_FAD_ox FAD-link 99.4 1.6E-12 3.5E-17 147.7 10.7 93 1607-1703 52-147 (419)
6 PRK11282 glcE glycolate oxidas 99.3 3.3E-12 7.3E-17 144.0 9.4 91 1608-1701 39-134 (352)
7 TIGR01676 GLDHase galactonolac 99.3 4.9E-12 1.1E-16 149.4 11.1 94 1608-1705 106-202 (541)
8 TIGR00387 glcD glycolate oxida 99.3 4.5E-12 9.7E-17 143.2 9.9 93 1606-1701 42-138 (413)
9 PLN02805 D-lactate dehydrogena 99.3 6.7E-12 1.5E-16 148.2 10.5 91 1606-1700 178-271 (555)
10 PRK11230 glycolate oxidase sub 99.3 1.3E-11 2.8E-16 143.7 10.4 93 1607-1702 101-197 (499)
11 TIGR01677 pln_FAD_oxido plant- 99.2 8.2E-11 1.8E-15 139.3 11.8 94 1607-1703 80-183 (557)
12 PLN02441 cytokinin dehydrogena 99.2 1.4E-10 3E-15 136.9 12.2 108 1606-1725 110-226 (525)
13 PLN02465 L-galactono-1,4-lacto 99.1 1.5E-10 3.2E-15 137.8 10.2 94 1608-1705 141-237 (573)
14 KOG4730|consensus 99.0 7.7E-10 1.7E-14 128.6 7.6 126 1579-1713 71-199 (518)
15 PRK11183 D-lactate dehydrogena 98.9 2.8E-09 6.1E-14 126.6 10.9 107 1603-1713 85-195 (564)
16 PRK13905 murB UDP-N-acetylenol 97.8 2.8E-05 6E-10 86.1 7.1 79 1607-1700 75-162 (298)
17 KOG1232|consensus 97.7 1.2E-05 2.7E-10 93.2 2.2 105 1607-1712 135-243 (511)
18 KOG1231|consensus 97.6 0.00016 3.4E-09 85.6 7.9 90 1608-1702 114-209 (505)
19 TIGR00179 murB UDP-N-acetyleno 97.2 0.00062 1.3E-08 75.7 6.6 57 1605-1667 55-115 (284)
20 KOG1233|consensus 97.2 0.00023 5.1E-09 83.0 3.1 104 1604-1709 207-314 (613)
21 PTZ00368 universal minicircle 96.6 0.0018 4E-08 65.3 4.2 58 1860-1919 77-147 (148)
22 PRK13906 murB UDP-N-acetylenol 96.6 0.0037 8.1E-08 70.6 6.8 77 1607-1693 81-162 (307)
23 PRK12436 UDP-N-acetylenolpyruv 96.3 0.0062 1.3E-07 68.8 6.4 80 1607-1701 81-168 (305)
24 PTZ00368 universal minicircle 95.9 0.0084 1.8E-07 60.7 4.5 59 1859-1919 26-95 (148)
25 PRK14652 UDP-N-acetylenolpyruv 95.7 0.0085 1.8E-07 67.7 3.9 70 1607-1687 80-153 (302)
26 COG5082 AIR1 Arginine methyltr 95.5 0.0094 2E-07 64.9 3.1 60 1855-1919 55-116 (190)
27 COG5082 AIR1 Arginine methyltr 95.3 0.013 2.8E-07 63.9 3.2 63 1861-1924 79-143 (190)
28 PRK14649 UDP-N-acetylenolpyruv 95.1 0.027 5.9E-07 63.5 5.4 60 1606-1667 64-125 (295)
29 PRK14653 UDP-N-acetylenolpyruv 93.7 0.13 2.8E-06 58.6 6.6 54 1606-1667 76-134 (297)
30 KOG4400|consensus 93.5 0.066 1.4E-06 58.8 3.8 26 1882-1907 146-171 (261)
31 PF00098 zf-CCHC: Zinc knuckle 92.0 0.094 2E-06 38.9 1.7 18 1861-1878 1-18 (18)
32 KOG4400|consensus 91.6 0.16 3.4E-06 56.0 3.6 38 1861-1898 144-183 (261)
33 PRK13903 murB UDP-N-acetylenol 81.1 1.8 3.9E-05 51.0 4.6 55 1607-1667 77-135 (363)
34 PF14392 zf-CCHC_4: Zinc knuck 79.2 1.2 2.5E-05 39.3 1.7 26 1851-1877 23-48 (49)
35 PF15288 zf-CCHC_6: Zinc knuck 72.5 1.7 3.7E-05 38.5 1.0 21 1901-1921 2-23 (40)
36 PF00098 zf-CCHC: Zinc knuckle 71.9 2.8 6.1E-05 31.3 1.8 17 1880-1896 1-17 (18)
37 PF13917 zf-CCHC_3: Zinc knuck 66.7 2.6 5.5E-05 37.5 0.8 19 1860-1878 4-22 (42)
38 KOG3116|consensus 57.9 3.2 7E-05 45.0 -0.1 22 1858-1879 25-46 (177)
39 smart00343 ZnF_C2HC zinc finge 57.6 4.9 0.00011 31.2 0.9 16 1862-1877 1-16 (26)
40 COG3357 Predicted transcriptio 55.4 6.4 0.00014 40.1 1.5 32 592-634 39-70 (97)
41 PRK13904 murB UDP-N-acetylenol 55.2 16 0.00035 41.8 4.7 69 1609-1693 53-125 (257)
42 PRK14650 UDP-N-acetylenolpyruv 50.4 26 0.00055 41.0 5.4 54 1607-1667 78-135 (302)
43 PRK04023 DNA polymerase II lar 48.9 17 0.00036 48.3 3.9 45 1859-1910 625-673 (1121)
44 COG1198 PriA Primosomal protei 48.1 11 0.00024 48.3 2.3 57 1489-1556 224-280 (730)
45 KOG0119|consensus 42.6 16 0.00035 45.4 2.4 37 1860-1896 261-302 (554)
46 COG4031 Predicted metal-bindin 41.2 12 0.00026 42.1 1.0 31 1880-1922 1-31 (227)
47 PF12353 eIF3g: Eukaryotic tra 40.9 13 0.00029 38.7 1.2 19 1899-1919 105-123 (128)
48 PF15288 zf-CCHC_6: Zinc knuck 39.6 13 0.00029 33.1 0.8 14 1861-1874 2-15 (40)
49 PRK00046 murB UDP-N-acetylenol 35.9 49 0.0011 39.2 4.8 55 1607-1667 64-125 (334)
50 PF13696 zf-CCHC_2: Zinc knuck 35.2 16 0.00035 31.3 0.6 20 1859-1878 7-26 (32)
51 PRK14651 UDP-N-acetylenolpyruv 34.0 45 0.00098 38.6 4.1 51 1607-1667 58-113 (273)
52 KOG3794|consensus 31.2 17 0.00037 44.2 0.2 23 1851-1873 113-137 (453)
53 PRK05978 hypothetical protein; 31.0 34 0.00074 37.0 2.3 38 1880-1921 34-74 (148)
54 TIGR03312 Se_sel_red_FAD proba 30.5 44 0.00095 37.8 3.2 60 1607-1667 43-108 (257)
55 PRK14714 DNA polymerase II lar 29.3 40 0.00088 45.8 3.0 29 1377-1405 100-130 (1337)
56 PRK14648 UDP-N-acetylenolpyruv 27.9 70 0.0015 38.5 4.4 73 1607-1693 74-153 (354)
57 PRK09799 putative oxidoreducta 27.1 64 0.0014 36.5 3.7 57 1606-1667 43-109 (258)
58 COG2219 PRI2 Eukaryotic-type D 26.2 37 0.0008 40.6 1.8 25 851-875 239-263 (363)
59 PRK14873 primosome assembly pr 25.1 42 0.0009 42.8 2.1 41 1860-1910 392-432 (665)
60 KOG0720|consensus 24.6 25 0.00053 43.6 -0.0 37 1878-1916 326-365 (490)
61 KOG0119|consensus 24.5 48 0.001 41.5 2.3 39 1880-1920 262-304 (554)
62 COG0812 MurB UDP-N-acetylmuram 22.4 1.1E+02 0.0025 36.1 4.6 55 1606-1665 64-122 (291)
63 PF13917 zf-CCHC_3: Zinc knuck 22.0 50 0.0011 29.7 1.3 18 1879-1896 4-21 (42)
64 TIGR00595 priA primosomal prot 21.8 1.2E+02 0.0025 37.5 4.8 65 1821-1909 189-262 (505)
No 1
>KOG1262|consensus
Probab=99.97 E-value=6.4e-32 Score=303.03 Aligned_cols=144 Identities=34% Similarity=0.576 Sum_probs=132.6
Q ss_pred hhcchHhHHHHHHHHHhhhcccccccccchhhhhhhhHHhhccCCCCCeeecCCCCccccccCcccCCCcceeeccCCCc
Q psy15832 1538 FKDKSVCHDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDT 1617 (2157)
Q Consensus 1538 fksa~e~HderVkkIqaQV~~~~~~yqf~e~k~pFRIreW~~hGrk~~MCTARPgWSTnSTRp~kYKrs~ivIDLSrLNR 1617 (2157)
-++++.+|+++|++||+|| ++|++.|++.+||||||||+|+|+|+.+||+.|+.|++..|-.
T Consensus 52 ~ssa~~~H~qrVkkIqkql------------------kew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~d 113 (543)
T KOG1262|consen 52 LSSAPREHQQRVKKIQKQL------------------KEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHD 113 (543)
T ss_pred hccCchHHHHHHHHHHHHH------------------HhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhH
Confidence 3566779999999999999 8999999999999999999999999999999999999996666
Q ss_pred eEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCcccc---ccccccE
Q psy15832 1618 ILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPE---WKSQQHA 1694 (2157)
Q Consensus 1618 ILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV~s---~~~qg~~ 1694 (2157)
||++|+++|||+|||+|+|+||.++|.|+||++||+||++++||||+|.|+|+| ++||++|+|.+++.+ ...+|+
T Consensus 114 ILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gie-s~ShkyGlfq~~~~aYEvVladGe- 191 (543)
T KOG1262|consen 114 ILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIE-SSSHKYGLFQHICTAYEVVLADGE- 191 (543)
T ss_pred HHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccc-cccchhhhHHhhhheeEEEecCCe-
Confidence 999999999999999999999999999999999999999999999999999999 999999999999998 456666
Q ss_pred EEEecccc
Q psy15832 1695 IVHLCSLL 1702 (2157)
Q Consensus 1695 ~Vh~CS~~ 1702 (2157)
+..|-+.
T Consensus 192 -lv~~t~d 198 (543)
T KOG1262|consen 192 -LVRVTPD 198 (543)
T ss_pred -EEEecCC
Confidence 4445443
No 2
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.55 E-value=4.8e-15 Score=141.70 Aligned_cols=115 Identities=23% Similarity=0.228 Sum_probs=97.8
Q ss_pred hccCCCCCeeecCCCCccccccCcccCCCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCccccccc-CC
Q psy15832 1578 IKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV-EL 1656 (2157)
Q Consensus 1578 ~~hGrk~~MCTARPgWSTnSTRp~kYKrs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP-Ef 1656 (2157)
++++.+..++-+..+|...+. ....+.||+++||+|+++|+++++++|||||++.||.+++.++|+++|+.| ..
T Consensus 21 ~~~~~~v~~~g~G~~~~~~~~-----~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~ 95 (139)
T PF01565_consen 21 NENGVPVRVRGGGHSWTGQSS-----DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEALAPRGLMLPVEPGSG 95 (139)
T ss_dssp HHTTSEEEEESSSTTSSSTTS-----STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHHHHHHTEEESSGGGST
T ss_pred HHcCCcEEEEcCCCCcccccc-----cCCcEEEeeccccccccccccceeEEEeccccchhccccccccccccccccccc
Confidence 345666666667666654443 245689999999999999999999999999999999999999999999888 55
Q ss_pred CcceecccccCCcccccCCCcccccCCcccc---ccccccEEEEecc
Q psy15832 1657 DDVTVGLLTKILQYIWRQAGRVAHFDPAQPE---WKSQQHAIVHLCS 1700 (2157)
Q Consensus 1657 dgATVGGnIAGTdVEGSSSHRhG~Fd~TV~s---~~~qg~~~Vh~CS 1700 (2157)
..+||||++++ ++||..++++|.+.++|.+ +..+|+ ++.||
T Consensus 96 ~~~tvGG~i~~-~~~g~~~~~~G~~~d~v~~~~~V~~~G~--v~~~s 139 (139)
T PF01565_consen 96 IPGTVGGAIAG-NGHGSGSRRYGTAADNVLSVEVVLADGE--VVRCS 139 (139)
T ss_dssp TTSBHHHHHHT-T-EETTHHHHCBGGGGEEEEEEEETTSS--EEEEE
T ss_pred ccceEchhhcC-CCccccccccccHHHeEEEEEEEcCCCc--EEEeC
Confidence 67899999999 9999999999999999999 678999 77776
No 3
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.49 E-value=2.6e-14 Score=157.92 Aligned_cols=96 Identities=20% Similarity=0.130 Sum_probs=90.1
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCC-cceecccccCCcccccCCCcccccCCcc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELD-DVTVGLLTKILQYIWRQAGRVAHFDPAQ 1685 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfd-gATVGGnIAGTdVEGSSSHRhG~Fd~TV 1685 (2157)
.++||+++||+|++||+++++|+|||||++.+|.++|.++||+||++|+.. .+||||+||+ +.+|.++++||.++++|
T Consensus 76 gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~-~~~G~~~~~yG~~~d~v 154 (459)
T COG0277 76 GVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIAT-NAGGLRSLRYGLTRDNV 154 (459)
T ss_pred cEEEEchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhc-CCCCccceecccHHHhe
Confidence 789999999999999999999999999999999999999999999999776 8999999999 99999999999999999
Q ss_pred cc---ccccccEEEEeccccccc
Q psy15832 1686 PE---WKSQQHAIVHLCSLLQIP 1705 (2157)
Q Consensus 1686 ~s---~~~qg~~~Vh~CS~~~~~ 1705 (2157)
.+ +..+|+ ++.|+..-.+
T Consensus 155 ~~l~vV~~dG~--i~~~~~~~~k 175 (459)
T COG0277 155 LGLRVVLPDGE--ILRLGRKLRK 175 (459)
T ss_pred eEEEEEcCCce--ehhhcCcccC
Confidence 99 788999 7778876554
No 4
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.38 E-value=1.2e-12 Score=150.37 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=87.8
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCccc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQP 1686 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV~ 1686 (2157)
.+.||+++||+|++||+++++|+|||||++++|.++|.++||++|+.++.+.+||||+|++ |+||+ ++++|++.++|.
T Consensus 58 gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iat-g~hG~-~~~~G~~~d~V~ 135 (438)
T TIGR01678 58 GFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIIST-GTHGS-SIKHGILATQVV 135 (438)
T ss_pred eEEEEhhhcCCceEEcCCCCEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcC-CCCCC-ccccCcHHhhEE
Confidence 5899999999999999999999999999999999999999999999899999999998877 99986 689999999999
Q ss_pred c---ccccccEEEEeccccccc
Q psy15832 1687 E---WKSQQHAIVHLCSLLQIP 1705 (2157)
Q Consensus 1687 s---~~~qg~~~Vh~CS~~~~~ 1705 (2157)
+ +..+|+ ++.|++...|
T Consensus 136 ~l~vV~~~G~--i~~~s~~~~~ 155 (438)
T TIGR01678 136 ALTIMTADGE--VLECSEERNA 155 (438)
T ss_pred EEEEEcCCCc--EEEeCCCCCh
Confidence 9 778999 8889986544
No 5
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.37 E-value=1.6e-12 Score=147.72 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=87.1
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCccc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQP 1686 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV~ 1686 (2157)
.+.||+++||+|+++|+++++|+|||||+++||.++|.++||++|+.|+....||||+|++ +.||++ +++|.|+++|.
T Consensus 52 g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~-~~hG~g-~~~G~~~d~V~ 129 (419)
T TIGR01679 52 GTMISLTGLQGVVDVDQPTGLATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGT-ATHGTG-VRFQALHARIV 129 (419)
T ss_pred CEEEEhhHcCCceeecCCCCEEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceec-CCCCCC-ccCCchhhhEE
Confidence 5899999999999999999999999999999999999999999999999999999999988 999975 69999999999
Q ss_pred c---ccccccEEEEeccccc
Q psy15832 1687 E---WKSQQHAIVHLCSLLQ 1703 (2157)
Q Consensus 1687 s---~~~qg~~~Vh~CS~~~ 1703 (2157)
+ +..+|+ ++.|++.+
T Consensus 130 ~l~vV~a~G~--v~~~~~~~ 147 (419)
T TIGR01679 130 SLRLVTAGGK--VLDLSEGD 147 (419)
T ss_pred EEEEEcCCCC--EEEEcCCC
Confidence 9 778999 88899764
No 6
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.32 E-value=3.3e-12 Score=144.04 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=84.1
Q ss_pred ceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCccccccc-CCC-cceecccccCCcccccCCCcccccCCcc
Q psy15832 1608 FPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV-ELD-DVTVGLLTKILQYIWRQAGRVAHFDPAQ 1685 (2157)
Q Consensus 1608 ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP-Efd-gATVGGnIAGTdVEGSSSHRhG~Fd~TV 1685 (2157)
..||+++||+|+++|++.++|+||||+++++|.++|.++|+++|+.| ++. .+||||+||+ +.+|..+++||.+.++|
T Consensus 39 ~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~lp~~p~~~~~~~TIGG~iat-g~~G~~~~~yG~~~D~V 117 (352)
T PRK11282 39 EVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQMLPFEPPHFGGGATLGGMVAA-GLSGPRRPWAGAVRDFV 117 (352)
T ss_pred eEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCeeCCCCCCcCCCcEehhHHhc-CCCCccccccCCHHHhE
Confidence 58999999999999999999999999999999999999999999877 555 4999999999 99999999999999999
Q ss_pred cc---ccccccEEEEeccc
Q psy15832 1686 PE---WKSQQHAIVHLCSL 1701 (2157)
Q Consensus 1686 ~s---~~~qg~~~Vh~CS~ 1701 (2157)
.+ +..+|+ ++.|+.
T Consensus 118 lg~~vV~~~Ge--i~~~gg 134 (352)
T PRK11282 118 LGTRLINGRGE--HLRFGG 134 (352)
T ss_pred eeEEEEcCCce--EEEeCC
Confidence 99 778999 666774
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.32 E-value=4.9e-12 Score=149.38 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=85.9
Q ss_pred ceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCcccc
Q psy15832 1608 FPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPE 1687 (2157)
Q Consensus 1608 ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV~s 1687 (2157)
..||+++||+||+||+++++|+||||++++||.++|.++||++|..|+.+.+||||+|+. |.||.+ .++|.++++|.+
T Consensus 106 ~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiat-gtHGtg-~~~G~l~d~V~~ 183 (541)
T TIGR01676 106 GMVNLALMDKVLEVDEEKKRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQV-GAHGTG-AKLPPIDEQVIA 183 (541)
T ss_pred eEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEcccccc-CCcCCC-CCCCCHHHhEEE
Confidence 479999999999999999999999999999999999999999998899999999999998 999875 589999999999
Q ss_pred ---ccccccEEEEeccccccc
Q psy15832 1688 ---WKSQQHAIVHLCSLLQIP 1705 (2157)
Q Consensus 1688 ---~~~qg~~~Vh~CS~~~~~ 1705 (2157)
+..+|+ ++.||+.+-|
T Consensus 184 l~lVta~G~--vv~~s~~~~p 202 (541)
T TIGR01676 184 MKLVTPAKG--TIEISKDKDP 202 (541)
T ss_pred EEEEECCCC--EEEECCCCCH
Confidence 667888 7779986533
No 8
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.31 E-value=4.5e-12 Score=143.17 Aligned_cols=93 Identities=13% Similarity=-0.042 Sum_probs=84.4
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccC-CCcceecccccCCcccccCCCcccccCCc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVE-LDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPE-fdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
..+.||+++||+||+||+++++|+|||||++.+|.+++.++||++|++|. ...+||||+|+. ..+|..+++||.++++
T Consensus 42 ~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~-na~G~~~~~yG~~~d~ 120 (413)
T TIGR00387 42 GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVEEHNLFYPPDPSSQISSTIGGNIAE-NAGGMRGLKYGTTVDY 120 (413)
T ss_pred CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCcccccceehhhhhc-CCCCCcceeeccHHhh
Confidence 46889999999999999999999999999999999999999999999994 456999999997 7888999999999999
Q ss_pred ccc---ccccccEEEEeccc
Q psy15832 1685 QPE---WKSQQHAIVHLCSL 1701 (2157)
Q Consensus 1685 V~s---~~~qg~~~Vh~CS~ 1701 (2157)
|.+ +.++|+ +..|+.
T Consensus 121 v~~l~vV~~~G~--~~~~~~ 138 (413)
T TIGR00387 121 VLGLEVVTADGE--ILRIGG 138 (413)
T ss_pred eeeEEEEeCCCC--EEEeCC
Confidence 999 668999 665664
No 9
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.29 E-value=6.7e-12 Score=148.18 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=83.9
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCcc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQ 1685 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV 1685 (2157)
..++||+++||+|++||+++++|+|||||++++|.+++.++||++|++|. .++||||+||+ +++|..+.+||...++|
T Consensus 178 ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~-~~~TIGG~ia~-n~~G~~s~~yG~~~d~V 255 (555)
T PLN02805 178 GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPG-PGATIGGMCAT-RCSGSLAVRYGTMRDNV 255 (555)
T ss_pred CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCc-cccChhhHhhC-CCcccccCccccHHHhE
Confidence 36899999999999999999999999999999999999999999999997 57999999998 99999999999999999
Q ss_pred cc---ccccccEEEEecc
Q psy15832 1686 PE---WKSQQHAIVHLCS 1700 (2157)
Q Consensus 1686 ~s---~~~qg~~~Vh~CS 1700 (2157)
.+ +..+|+ ++.|+
T Consensus 256 ~~levVl~dG~--iv~~~ 271 (555)
T PLN02805 256 ISLKVVLPNGD--VVKTA 271 (555)
T ss_pred EEEEEEcCCce--EEEec
Confidence 99 678999 54443
No 10
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.26 E-value=1.3e-11 Score=143.72 Aligned_cols=93 Identities=9% Similarity=-0.050 Sum_probs=84.8
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCccccccc-CCCcceecccccCCcccccCCCcccccCCcc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV-ELDDVTVGLLTKILQYIWRQAGRVAHFDPAQ 1685 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP-EfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV 1685 (2157)
.++||+++||+|++||+++++|+|||||++.+|.+++.++||++|++| +...+||||+|+. ...|..+++||...++|
T Consensus 101 gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~-nagG~~~~~yG~~~d~v 179 (499)
T PRK11230 101 GVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAE-NAGGVHCLKYGLTVHNL 179 (499)
T ss_pred cEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceecc-CCCCccceeeCChhhhe
Confidence 589999999999999999999999999999999999999999999999 5557999999998 66778889999999999
Q ss_pred cc---ccccccEEEEecccc
Q psy15832 1686 PE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1686 ~s---~~~qg~~~Vh~CS~~ 1702 (2157)
.+ +..+|+ ++.|+..
T Consensus 180 ~~levVl~~G~--i~~~~~~ 197 (499)
T PRK11230 180 LKVEILTLDGE--ALTLGSD 197 (499)
T ss_pred eEEEEEcCCCc--EEEeCCc
Confidence 99 778999 7767654
No 11
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.18 E-value=8.2e-11 Score=139.33 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=84.8
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCC-cccccCCcc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAG-RVAHFDPAQ 1685 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSH-RhG~Fd~TV 1685 (2157)
.+.||+++||+||+||.++++|+||||+++++|.++|.++||++|..|...++||||+|++ +.||+..+ ++|.+.++|
T Consensus 80 gvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiat-GthGs~~~~~~G~l~d~V 158 (557)
T TIGR01677 80 ALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGT-GAHGSSLWGKGSAVHDYV 158 (557)
T ss_pred EEEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhC-CCCCccccccccchhheE
Confidence 4899999999999999999999999999999999999999999999998889999999976 99998775 888999999
Q ss_pred cc---ccccc------cEEEEeccccc
Q psy15832 1686 PE---WKSQQ------HAIVHLCSLLQ 1703 (2157)
Q Consensus 1686 ~s---~~~qg------~~~Vh~CS~~~ 1703 (2157)
.+ +..+| + ++.|++.+
T Consensus 159 ~~l~vV~a~G~a~G~~~--v~~~s~~~ 183 (557)
T TIGR01677 159 VGIRLVVPASAAEGFAK--VRILSEGD 183 (557)
T ss_pred EEEEEEeCCCcccCcce--EEEeCCCC
Confidence 99 55565 5 67788765
No 12
>PLN02441 cytokinin dehydrogenase
Probab=99.16 E-value=1.4e-10 Score=136.85 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=92.7
Q ss_pred CcceeeccCCCc------eEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCccc
Q psy15832 1606 SMFPVDLEAMDT------ILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVA 1679 (2157)
Q Consensus 1606 s~ivIDLSrLNR------ILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG 1679 (2157)
..++|||++||+ ++++|.+.++|+|++|+++.+|.+++.++||++++.++...+||||.+++.|+ |..+++||
T Consensus 110 ~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~-gg~s~ryG 188 (525)
T PLN02441 110 GGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGI-SGQAFRHG 188 (525)
T ss_pred CeEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCc-cccccccC
Confidence 368999999999 79999999999999999999999999999999888888889999999998444 48899999
Q ss_pred ccCCcccc---ccccccEEEEecccccccccccHHHHHHHHHHhccCCC
Q psy15832 1680 HFDPAQPE---WKSQQHAIVHLCSLLQIPTTLNVAQLQELFMNEMGQEG 1725 (2157)
Q Consensus 1680 ~Fd~TV~s---~~~qg~~~Vh~CS~~~~~~~~~~~~~~~~~~~~~~~~~ 1725 (2157)
.+.++|.+ +..+|+ ++.||+.+- .+||---.|-+|
T Consensus 189 ~~~d~Vl~leVVtadGe--vv~~s~~~n---------~DLF~Av~GglG 226 (525)
T PLN02441 189 PQISNVLELDVVTGKGE--VVTCSPTQN---------SDLFFAVLGGLG 226 (525)
T ss_pred cHHHhEEEEEEEeCCce--EEEeCCCCC---------hhHHHhhccCCC
Confidence 99999999 788999 788997542 256655555443
No 13
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.12 E-value=1.5e-10 Score=137.76 Aligned_cols=94 Identities=23% Similarity=0.247 Sum_probs=84.1
Q ss_pred ceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCcccc
Q psy15832 1608 FPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPE 1687 (2157)
Q Consensus 1608 ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV~s 1687 (2157)
..||++.||+||+||+++++|+|++|+++.+|.++|.++||+++..++....||||+|+. |.||.. +++|.++++|.+
T Consensus 141 glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIst-GtHGtG-~~~g~i~d~V~~ 218 (573)
T PLN02465 141 GMVNLALMDKVLEVDKEKKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQV-GAHGTG-ARIPPIDEQVVS 218 (573)
T ss_pred EEEECcCCCCcEEEeCCCCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhC-CCCCcC-CCcCcHhheEEE
Confidence 368999999999999999999999999999999999999999999888888999999975 999765 589999999998
Q ss_pred ---ccccccEEEEeccccccc
Q psy15832 1688 ---WKSQQHAIVHLCSLLQIP 1705 (2157)
Q Consensus 1688 ---~~~qg~~~Vh~CS~~~~~ 1705 (2157)
+..+|+ ++.|++.+.|
T Consensus 219 l~lVta~G~--vv~~s~~~~p 237 (573)
T PLN02465 219 MKLVTPAKG--TIELSKEDDP 237 (573)
T ss_pred EEEEECCCC--EEEECCCCCH
Confidence 557888 6779886554
No 14
>KOG4730|consensus
Probab=98.97 E-value=7.7e-10 Score=128.59 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=97.7
Q ss_pred ccCCCCCeeecCCCCccccccCcccCCCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCc
Q psy15832 1579 KTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDD 1658 (2157)
Q Consensus 1579 ~hGrk~~MCTARPgWSTnSTRp~kYKrs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdg 1658 (2157)
.+|++.++.+ .|.|-.-+=-. ....|++.+||+++++|+|.++++||+||++.||++++...||.+|-.|++.+
T Consensus 71 ~a~~kirvVg--~gHSp~~l~ct----dg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~GlsL~~~~si~e 144 (518)
T KOG4730|consen 71 EAGKKIRVVG--SGHSPSKLVCT----DGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLGLSLPNAPSISE 144 (518)
T ss_pred HcCceEEEec--ccCCCCcceec----cccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcCccccCCCceec
Confidence 4666666655 34432222111 12679999999999999999999999999999999999999999999999999
Q ss_pred ceecccccCCcccccCCCcccccCCcccc---ccccccEEEEecccccccccccHHHH
Q psy15832 1659 VTVGLLTKILQYIWRQAGRVAHFDPAQPE---WKSQQHAIVHLCSLLQIPTTLNVAQL 1713 (2157)
Q Consensus 1659 ATVGGnIAGTdVEGSSSHRhG~Fd~TV~s---~~~qg~~~Vh~CS~~~~~~~~~~~~~ 1713 (2157)
.||||+|+- |-||||-..|+.-.+...- .-.+|. +.+||+---|.-+|.|++
T Consensus 145 ~sVgGii~T-GaHGSS~~vH~~v~~i~~v~~~~~~~G~--v~~Ls~e~dpe~F~AAkv 199 (518)
T KOG4730|consen 145 QSVGGIIST-GAHGSSLWVHDYVSEIISVSPITPADGF--VVVLSEEKDPELFNAAKV 199 (518)
T ss_pred ceeeeEEec-ccCCCccccCcccceeEEEeeeccCCce--EEEecccCCHHHHhhhhh
Confidence 999998765 9998888756544333222 445565 777999999999998876
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=98.94 E-value=2.8e-09 Score=126.61 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=91.7
Q ss_pred cCCCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCC--cceecccccCCcccccCCCcccc
Q psy15832 1603 YKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELD--DVTVGLLTKILQYIWRQAGRVAH 1680 (2157)
Q Consensus 1603 YKrs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfd--gATVGGnIAGTdVEGSSSHRhG~ 1680 (2157)
|-+..++||+++||+|++|| ++++++|||||++.+|.+++.++|++||.+|+.. ++||||+||. .--|..-.|+|.
T Consensus 85 ~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAt-NAGG~~vlRgga 162 (564)
T PRK11183 85 YDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICN-NSGGALVQRGPA 162 (564)
T ss_pred CcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEE-CCcchhheEcch
Confidence 55668999999999999999 6789999999999999999999999999988433 7899999995 555689999999
Q ss_pred cCCcccc--ccccccEEEEecccccccccccHHHH
Q psy15832 1681 FDPAQPE--WKSQQHAIVHLCSLLQIPTTLNVAQL 1713 (2157)
Q Consensus 1681 Fd~TV~s--~~~qg~~~Vh~CS~~~~~~~~~~~~~ 1713 (2157)
+.+.|.+ +.++|+ +++-..|.|...-...++
T Consensus 163 ~te~vL~~~V~~dGe--l~lVn~lgi~lG~~~e~i 195 (564)
T PRK11183 163 YTEMALYAQIDEDGK--LELVNHLGIDLGETPEEI 195 (564)
T ss_pred hhhhhhhhEECCCCc--EEEeeccCcccCCCHHHH
Confidence 9999999 889999 666678888866555443
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.85 E-value=2.8e-05 Score=86.14 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=60.7
Q ss_pred cceeeccC-CCceEEEecCCCEEEEcCCCCHHHHHHHhccCCc----ccccccCCCcceecccccC-CcccccCCCcccc
Q psy15832 1607 MFPVDLEA-MDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGW----TIPVVVELDDVTVGLLTKI-LQYIWRQAGRVAH 1680 (2157)
Q Consensus 1607 ~ivIDLSr-LNRILEID~ENMTVtVEPGVTMgDLvEALLP~GL----fpPVVPEfdgATVGGnIAG-TdVEGSSSHRhG~ 1680 (2157)
.++|++++ |++| |.++.+++|++|+.+.+|.+++.++|| +++..| + ||||+++. .+.+| |.
T Consensus 75 gvvI~l~~~l~~i---~~~~~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gip---G-TVGGai~~NaG~~G------~~ 141 (298)
T PRK13905 75 GVVIRLGKGLNEI---EVEGNRITAGAGAPLIKLARFAAEAGLSGLEFAAGIP---G-TVGGAVFMNAGAYG------GE 141 (298)
T ss_pred eEEEEecCCcceE---EecCCEEEEECCCcHHHHHHHHHHcCCCcchhccCCC---c-chhHHHHHcCCcCc------eE
Confidence 58899988 9976 445689999999999999999999999 344444 3 89999974 23332 47
Q ss_pred cCCcccc---ccccccEEEEecc
Q psy15832 1681 FDPAQPE---WKSQQHAIVHLCS 1700 (2157)
Q Consensus 1681 Fd~TV~s---~~~qg~~~Vh~CS 1700 (2157)
+.++|.+ +..+|+ ++.|+
T Consensus 142 ~~d~v~~v~vv~~~G~--~~~~~ 162 (298)
T PRK13905 142 TADVLESVEVLDRDGE--IKTLS 162 (298)
T ss_pred hheeEEEEEEEeCCCC--EEEEE
Confidence 8888888 667888 55454
No 17
>KOG1232|consensus
Probab=97.74 E-value=1.2e-05 Score=93.20 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=84.9
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCc-ceecccccCCcccccCCCcccccCCcc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDD-VTVGLLTKILQYIWRQAGRVAHFDPAQ 1685 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdg-ATVGGnIAGTdVEGSSSHRhG~Fd~TV 1685 (2157)
-+++++.+||+|++||+-.++++|++||.|.++-..+..+|+++|.+-+.++ |.|||++|--+| |=.--|||+.+-+|
T Consensus 135 EiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAG-GlrllRYGsLHgsv 213 (511)
T KOG1232|consen 135 EIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAG-GLRLLRYGSLHGSV 213 (511)
T ss_pred HHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCC-ceEEEEecccccce
Confidence 3779999999999999999999999999999999999999999999997774 999999987444 48889999999999
Q ss_pred cc---ccccccEEEEecccccccccccHHH
Q psy15832 1686 PE---WKSQQHAIVHLCSLLQIPTTLNVAQ 1712 (2157)
Q Consensus 1686 ~s---~~~qg~~~Vh~CS~~~~~~~~~~~~ 1712 (2157)
.. ..++|+++=..-+.-.--|++...|
T Consensus 214 LGle~Vlp~G~vl~~~~slRKDNTgydlkh 243 (511)
T KOG1232|consen 214 LGLEVVLPNGTVLDLLSSLRKDNTGYDLKH 243 (511)
T ss_pred eeeEEEcCCCchhhhhhhhcccCccccchh
Confidence 87 6678883322222223345555444
No 18
>KOG1231|consensus
Probab=97.56 E-value=0.00016 Score=85.58 Aligned_cols=90 Identities=19% Similarity=0.001 Sum_probs=81.3
Q ss_pred ceeecc-CCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCc--ccccccCCCcceecccccCCcccccCCCcccccCCc
Q psy15832 1608 FPVDLE-AMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGW--TIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1608 ivIDLS-rLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GL--fpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
+.++++ .|.++-.++.+.+.|.|+||..--+|.++++.+|| +.+.||.- +||||.+|+ ++.|.+.||||---..
T Consensus 114 V~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~--ltVGGtlsn-agiggqafRyGpqi~N 190 (505)
T KOG1231|consen 114 VCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP--LTVGGTLSN-AGIGGQAFRYGPQISN 190 (505)
T ss_pred EEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccc--eeecceecc-Cccccceeeccchhhc
Confidence 456665 77888888888899999999999999999999999 88899963 999999999 8889999999999999
Q ss_pred ccc---ccccccEEEEecccc
Q psy15832 1685 QPE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1685 V~s---~~~qg~~~Vh~CS~~ 1702 (2157)
|.+ +.+.|+ |..|+.-
T Consensus 191 V~~LdVVtgkGe--iv~cs~r 209 (505)
T KOG1231|consen 191 VIELDVVTGKGE--IVTCSKR 209 (505)
T ss_pred eEEEEEEcCCCc--EEecccc
Confidence 998 789999 7889987
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=97.18 E-value=0.00062 Score=75.72 Aligned_cols=57 Identities=21% Similarity=0.152 Sum_probs=50.2
Q ss_pred CCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCc----ccccccCCCcceecccccC
Q psy15832 1605 SSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGW----TIPVVVELDDVTVGLLTKI 1667 (2157)
Q Consensus 1605 rs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GL----fpPVVPEfdgATVGGnIAG 1667 (2157)
...++|++++|+++. +|. ..+++|++||.+.+|.+++..+|| +++..|+ ||||+++.
T Consensus 55 ~~gvvi~l~~~~~~~-~~~-~~~v~v~aG~~~~~l~~~~~~~Gl~GlE~l~giPG----tvGGai~m 115 (284)
T TIGR00179 55 RGGVIINLGKGIDIE-DDE-GEYVHVGGGENWHKLVKYALKNGLSGLEFLAGIPG----TVGGAVIM 115 (284)
T ss_pred cCeEEEECCCCceEE-Eec-CCEEEEEcCCcHHHHHHHHHHCCCcccccCCCCCc----hHHHHHHH
Confidence 345889999998874 576 679999999999999999999999 9999988 79999876
No 20
>KOG1233|consensus
Probab=97.16 E-value=0.00023 Score=83.04 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=80.5
Q ss_pred CCCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCccccccc-CCCcceecccccCCcccccCCCcccccC
Q psy15832 1604 KSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV-ELDDVTVGLLTKILQYIWRQAGRVAHFD 1682 (2157)
Q Consensus 1604 Krs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP-EfdgATVGGnIAGTdVEGSSSHRhG~Fd 1682 (2157)
++.-+.+|++.||+||.||.+|+|+.+|+|++=.+|-+.|...||.----| +..+.|+||-++- -.-|----.||-..
T Consensus 207 ~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsT-RASGMKKN~YGNIE 285 (613)
T KOG1233|consen 207 KRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVST-RASGMKKNKYGNIE 285 (613)
T ss_pred ceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeee-ccccccccccCChh
Confidence 455567999999999999999999999999999999999999999999899 7888999999986 33344455788888
Q ss_pred Ccccc---ccccccEEEEeccccccccccc
Q psy15832 1683 PAQPE---WKSQQHAIVHLCSLLQIPTTLN 1709 (2157)
Q Consensus 1683 ~TV~s---~~~qg~~~Vh~CS~~~~~~~~~ 1709 (2157)
+-|.- ..+.|. |.-+|+.....+.-+
T Consensus 286 DLVVh~~mVtP~Gi-iek~Cq~PRmS~GPD 314 (613)
T KOG1233|consen 286 DLVVHLNMVTPKGI-IEKQCQVPRMSSGPD 314 (613)
T ss_pred HheEEEEeecCcch-hhhhhcCCcccCCCC
Confidence 77765 333333 444565554444433
No 21
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=96.64 E-value=0.0018 Score=65.34 Aligned_cols=58 Identities=29% Similarity=0.681 Sum_probs=44.4
Q ss_pred CcccccccccCcCcCCCCCCC-------cccccCCCCCCCCCCCCC-----CCccccCCCC-CCCCCCCCChh
Q psy15832 1860 VVQCYQCAKFGHTSKFCHNPV-------LCNVCYLPKLDQHTCRAP-----ENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1860 P~QCFNCQRFGHTSayCKspP-------RCVKCGEnHHdSKECpKn-----sPPKCANCGG-pHpANSRgCPV 1919 (2157)
...|++|...||.++.|.... .|.+|++.+|.+.+|+.. ....|.+|++ .|.+ +.||.
T Consensus 77 ~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~gH~~~~C~~~~~~~~~~~~C~~Cg~~gH~~--~dCp~ 147 (148)
T PTZ00368 77 PRSCYNCGQTGHISRECPNRAKGGAARRACYNCGGEGHISRDCPNAGKRPGGDKTCYNCGQTGHLS--RDCPD 147 (148)
T ss_pred CcccCcCCCCCcccccCCCcccccccchhhcccCcCCcchhcCCCccccCCCCCccccCCCcCccc--ccCCC
Confidence 457899988899999887643 699999988888888762 3568889984 5765 57774
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.61 E-value=0.0037 Score=70.61 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=57.0
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCccccccc-CCCcceecccccCCcccccCCCcc-cccCCc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV-ELDDVTVGLLTKILQYIWRQAGRV-AHFDPA 1684 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP-EfdgATVGGnIAGTdVEGSSSHRh-G~Fd~T 1684 (2157)
.++|++++|++| ++|. .+++|++||.+.+|.+++..+||.-.--+ +.++ ||||+++.-.+ -| |.+.+.
T Consensus 81 GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG-tVGGav~mNaG------ayGg~i~D~ 150 (307)
T PRK13906 81 GIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG-SIGGAVYMNAG------AYGGEVKDC 150 (307)
T ss_pred eEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCc-cHhHHHHhhCC------cchhhhhhh
Confidence 688999889987 6664 48999999999999999999999411111 3344 79999877332 24 577787
Q ss_pred ccc---cccccc
Q psy15832 1685 QPE---WKSQQH 1693 (2157)
Q Consensus 1685 V~s---~~~qg~ 1693 (2157)
|.+ +..+|+
T Consensus 151 l~~v~vv~~~G~ 162 (307)
T PRK13906 151 IDYALCVNEQGS 162 (307)
T ss_pred eeEEEEEeCCCC
Confidence 777 556777
No 23
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.34 E-value=0.0062 Score=68.77 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=55.8
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccCCcccccCCCccc-cc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKILQYIWRQAGRVA-HF 1681 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAGTdVEGSSSHRhG-~F 1681 (2157)
.++|++++|+.| ++| ..+++|++||.+.+|.+++..+||. +...|+ ||||+++.-.+ .|| ..
T Consensus 81 GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPG----tVGGav~~NAG------ayG~~~ 147 (305)
T PRK12436 81 GITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPG----SVGGALYMNAG------AYGGEI 147 (305)
T ss_pred EEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCcc----chhHHHHhcCc------cchheh
Confidence 578999889865 565 5689999999999999999999985 223443 79999886222 255 33
Q ss_pred CCcccc---ccccccEEEEeccc
Q psy15832 1682 DPAQPE---WKSQQHAIVHLCSL 1701 (2157)
Q Consensus 1682 d~TV~s---~~~qg~~~Vh~CS~ 1701 (2157)
++.+.+ +..+|+ ++.+++
T Consensus 148 ~dvl~~v~vv~~~G~--v~~~~~ 168 (305)
T PRK12436 148 SFVLTEAVVMTGDGE--LRTLTK 168 (305)
T ss_pred heeeeEEEEEeCCCC--EEEEEH
Confidence 444433 456777 554444
No 24
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=95.95 E-value=0.0084 Score=60.68 Aligned_cols=59 Identities=27% Similarity=0.649 Sum_probs=38.0
Q ss_pred CCcccccccccCcCcCCCCCCC------cccccCCCCCCCCCCCCC----CCccccCCCC-CCCCCCCCChh
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHNPV------LCNVCYLPKLDQHTCRAP----ENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKspP------RCVKCGEnHHdSKECpKn----sPPKCANCGG-pHpANSRgCPV 1919 (2157)
...+||+|...||.+..|..+. .|.+|++.+|.+.+|+.. ....|.+|++ .|.+ +.||.
T Consensus 26 ~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~~GH~~--~~C~~ 95 (148)
T PTZ00368 26 KARPCYKCGEPGHLSRECPSAPGGRGERSCYNCGKTGHLSRECPEAPPGSGPRSCYNCGQTGHIS--RECPN 95 (148)
T ss_pred CCccCccCCCCCcCcccCcCCCCCCCCcccCCCCCcCcCcccCCCcccCCCCcccCcCCCCCccc--ccCCC
Confidence 3457777777777777776542 577777777777777641 1235777774 3644 46775
No 25
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.72 E-value=0.0085 Score=67.68 Aligned_cols=70 Identities=9% Similarity=-0.001 Sum_probs=51.5
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccCCcccccCCCcccccC
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKILQYIWRQAGRVAHFD 1682 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd 1682 (2157)
.++|+++++-..+. .++.+++|+|||.+.+|.+++.++||. ++..|+ ||||+++.-.+ -++|...
T Consensus 80 gvVI~l~~~~~~i~--~~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG----TvGGav~mNaG-----a~ggei~ 148 (302)
T PRK14652 80 GVVLRLPQDFPGES--TDGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG----TLGGAVAMNAG-----TKLGEMK 148 (302)
T ss_pred eEEEEecCCcceEE--ecCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCc----chhHHHHHcCC-----CCceEhh
Confidence 57889876422334 345699999999999999999999994 444444 99999987332 3566677
Q ss_pred Ccccc
Q psy15832 1683 PAQPE 1687 (2157)
Q Consensus 1683 ~TV~s 1687 (2157)
+.|.+
T Consensus 149 d~v~~ 153 (302)
T PRK14652 149 DVVTA 153 (302)
T ss_pred heEEE
Confidence 77766
No 26
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.50 E-value=0.0094 Score=64.94 Aligned_cols=60 Identities=23% Similarity=0.648 Sum_probs=45.9
Q ss_pred ecCCCCcccccccccCcCcCCCCCCCcccccCCCCCCCCCCCCCCCccccCCCC-CCCCCCCCC-hh
Q psy15832 1855 PFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKG-DHKPTEQRC-PE 1919 (2157)
Q Consensus 1855 PYVprP~QCFNCQRFGHTSayCKspPRCVKCGEnHHdSKECpKnsPPKCANCGG-pHpANSRgC-PV 1919 (2157)
.+...-..||+|..-||.+..|. ...|.+|+..+|.+..|+. +.+|.+|+. .|.+ +.| |.
T Consensus 55 ~~~~~~~~C~nCg~~GH~~~DCP-~~iC~~C~~~~H~s~~C~~--~~~C~~Cg~~GH~~--~dC~P~ 116 (190)
T COG5082 55 AIREENPVCFNCGQNGHLRRDCP-HSICYNCSWDGHRSNHCPK--PKKCYNCGETGHLS--RDCNPS 116 (190)
T ss_pred cccccccccchhcccCcccccCC-hhHhhhcCCCCcccccCCc--ccccccccccCccc--cccCcc
Confidence 34456778999999999999999 6888888767777888874 478888883 4754 677 44
No 27
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.28 E-value=0.013 Score=63.90 Aligned_cols=63 Identities=24% Similarity=0.641 Sum_probs=51.5
Q ss_pred cccccccccCcCcCCCCCCCcccccCCCCCCCCCC-CC-CCCccccCCCCCCCCCCCCChhHHHHH
Q psy15832 1861 VQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTC-RA-PENVRCVNCKGDHKPTEQRCPEMSRQK 1924 (2157)
Q Consensus 1861 ~QCFNCQRFGHTSayCKspPRCVKCGEnHHdSKEC-pK-nsPPKCANCGGpHpANSRgCPVYKKQK 1924 (2157)
..|++|-.-||.+..|.....|.+||+.+|..++| +. ..+..|..|+..|. ..+.||.-.+..
T Consensus 79 ~iC~~C~~~~H~s~~C~~~~~C~~Cg~~GH~~~dC~P~~~~~~~C~~C~s~~H-~s~~Cp~~~k~y 143 (190)
T COG5082 79 SICYNCSWDGHRSNHCPKPKKCYNCGETGHLSRDCNPSKDQQKSCFDCNSTRH-SSEDCPSIWKHY 143 (190)
T ss_pred hHhhhcCCCCcccccCCcccccccccccCccccccCcccccCcceeccCCCcc-ccccCccccccc
Confidence 79999977899999999999999999999999999 44 34668999995443 468999754433
No 28
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.14 E-value=0.027 Score=63.47 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=47.5
Q ss_pred CcceeeccCCC-ceEEEecCCCEEEEcCCCCHHHHHHHhccCCcc-cccccCCCcceecccccC
Q psy15832 1606 SMFPVDLEAMD-TILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWT-IPVVVELDDVTVGLLTKI 1667 (2157)
Q Consensus 1606 s~ivIDLSrLN-RILEID~ENMTVtVEPGVTMgDLvEALLP~GLf-pPVVPEfdgATVGGnIAG 1667 (2157)
..++|++++++ ++ ..|.+.++++|++|+.+.+|++.+..+||. +-...+.++ ||||++.+
T Consensus 64 ~GvVI~l~~~~~~i-~~~~~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG-TvGGa~~m 125 (295)
T PRK14649 64 DGLVARYRGQRWEL-HEHGDTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG-TIGGAIYG 125 (295)
T ss_pred CeEEEEecCCCcEE-EEeCCcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc-chhHHHHh
Confidence 35778887754 45 466677799999999999999999999997 445558888 99995544
No 29
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=93.70 E-value=0.13 Score=58.63 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=45.0
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCc-----ccccccCCCcceecccccC
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGW-----TIPVVVELDDVTVGLLTKI 1667 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GL-----fpPVVPEfdgATVGGnIAG 1667 (2157)
...+|.+.+|+.| ++|. ..++|++||.+.+|.+++..+|| +.++ |++ |||+++.
T Consensus 76 ~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gI-PGT----VGGAv~m 134 (297)
T PRK14653 76 DFVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGI-PGS----VGGAVYM 134 (297)
T ss_pred cEEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCC-chh----HHHHHHH
Confidence 3677888779977 7873 57999999999999999999999 5554 874 9999876
No 30
>KOG4400|consensus
Probab=93.50 E-value=0.066 Score=58.81 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=12.3
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCC
Q psy15832 1882 CNVCYLPKLDQHTCRAPENVRCVNCK 1907 (2157)
Q Consensus 1882 CVKCGEnHHdSKECpKnsPPKCANCG 1907 (2157)
|..||+.+|.+.+|+......|-.|+
T Consensus 146 Cy~Cg~~GH~s~~C~~~~~~~c~~c~ 171 (261)
T KOG4400|consen 146 CYSCGEQGHISDDCPENKGGTCFRCG 171 (261)
T ss_pred cCCCCcCCcchhhCCCCCCCccccCC
Confidence 55555554445555422244455555
No 31
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=92.01 E-value=0.094 Score=38.93 Aligned_cols=18 Identities=28% Similarity=0.901 Sum_probs=15.2
Q ss_pred cccccccccCcCcCCCCC
Q psy15832 1861 VQCYQCAKFGHTSKFCHN 1878 (2157)
Q Consensus 1861 ~QCFNCQRFGHTSayCKs 1878 (2157)
..||+|.+.||.+++|.+
T Consensus 1 ~~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGCTSSS
T ss_pred CcCcCCCCcCcccccCcc
Confidence 369999999999999963
No 32
>KOG4400|consensus
Probab=91.59 E-value=0.16 Score=55.96 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=35.0
Q ss_pred cccccccccCcCcCCCCC--CCcccccCCCCCCCCCCCCC
Q psy15832 1861 VQCYQCAKFGHTSKFCHN--PVLCNVCYLPKLDQHTCRAP 1898 (2157)
Q Consensus 1861 ~QCFNCQRFGHTSayCKs--pPRCVKCGEnHHdSKECpKn 1898 (2157)
.-||+|.+.||+...|.. ..+|.+|+..+|...+|+..
T Consensus 144 ~~Cy~Cg~~GH~s~~C~~~~~~~c~~c~~~~h~~~~C~~~ 183 (261)
T KOG4400|consen 144 AKCYSCGEQGHISDDCPENKGGTCFRCGKVGHGSRDCPSK 183 (261)
T ss_pred CccCCCCcCCcchhhCCCCCCCccccCCCcceecccCCcc
Confidence 669999999999999995 79999999999999999874
No 33
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=81.08 E-value=1.8 Score=50.99 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=42.9
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccC
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKI 1667 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAG 1667 (2157)
..+|+++ ++.| ++|.+..+++|++|+.+.+|++++.++||. +...|+ ||||++..
T Consensus 77 GvVI~l~-~~~i-~i~~~~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPG----TVGGAv~m 135 (363)
T PRK13903 77 GTVVRVA-TRGV-TVDCGGGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPG----SAGATPVQ 135 (363)
T ss_pred EEEEEeC-CCcE-EEeCCCCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCc----chhhHhhc
Confidence 5778886 5654 788777899999999999999999999985 344555 56776654
No 34
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=79.24 E-value=1.2 Score=39.27 Aligned_cols=26 Identities=23% Similarity=0.731 Sum_probs=21.7
Q ss_pred EEeeecCCCCcccccccccCcCcCCCC
Q psy15832 1851 IECAPFIQRVVQCYQCAKFGHTSKFCH 1877 (2157)
Q Consensus 1851 VKVEPYVprP~QCFNCQRFGHTSayCK 1877 (2157)
+.|+ |..-+..|++|+.+||....|.
T Consensus 23 ~~v~-YE~lp~~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 23 VKVK-YERLPRFCFHCGRIGHSDKECP 48 (49)
T ss_pred EEEE-ECCcChhhcCCCCcCcCHhHcC
Confidence 3443 7777899999999999999996
No 35
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=72.46 E-value=1.7 Score=38.46 Aligned_cols=21 Identities=43% Similarity=0.967 Sum_probs=17.1
Q ss_pred ccccCCCC-CCCCCCCCChhHH
Q psy15832 1901 VRCVNCKG-DHKPTEQRCPEMS 1921 (2157)
Q Consensus 1901 PKCANCGG-pHpANSRgCPVYK 1921 (2157)
.||.+|++ .|.++++.||.|.
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~ 23 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYC 23 (40)
T ss_pred ccccccccccccccCccCCCCC
Confidence 47888884 5999999999864
No 36
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=71.95 E-value=2.8 Score=31.35 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.8
Q ss_pred CcccccCCCCCCCCCCC
Q psy15832 1880 VLCNVCYLPKLDQHTCR 1896 (2157)
Q Consensus 1880 PRCVKCGEnHHdSKECp 1896 (2157)
.+|.+|++.+|.+.+|+
T Consensus 1 ~~C~~C~~~GH~~~~Cp 17 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCP 17 (18)
T ss_dssp SBCTTTSCSSSCGCTSS
T ss_pred CcCcCCCCcCcccccCc
Confidence 47999999999898986
No 37
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=66.70 E-value=2.6 Score=37.46 Aligned_cols=19 Identities=37% Similarity=0.758 Sum_probs=16.7
Q ss_pred CcccccccccCcCcCCCCC
Q psy15832 1860 VVQCYQCAKFGHTSKFCHN 1878 (2157)
Q Consensus 1860 P~QCFNCQRFGHTSayCKs 1878 (2157)
-.+|.+|.++||.+..|+.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 4689999999999999984
No 38
>KOG3116|consensus
Probab=57.92 E-value=3.2 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=18.8
Q ss_pred CCCcccccccccCcCcCCCCCC
Q psy15832 1858 QRVVQCYQCAKFGHTSKFCHNP 1879 (2157)
Q Consensus 1858 prP~QCFNCQRFGHTSayCKsp 1879 (2157)
+.-+||.+|+++||....|+..
T Consensus 25 ~~~~rCQKClq~GHWtYECk~k 46 (177)
T KOG3116|consen 25 GSSARCQKCLQAGHWTYECKNK 46 (177)
T ss_pred ccchhHHHHHhhccceeeecCc
Confidence 3556999999999999999865
No 39
>smart00343 ZnF_C2HC zinc finger.
Probab=57.55 E-value=4.9 Score=31.22 Aligned_cols=16 Identities=44% Similarity=1.134 Sum_probs=13.7
Q ss_pred ccccccccCcCcCCCC
Q psy15832 1862 QCYQCAKFGHTSKFCH 1877 (2157)
Q Consensus 1862 QCFNCQRFGHTSayCK 1877 (2157)
+|++|.+.||.+.+|.
T Consensus 1 ~C~~CG~~GH~~~~C~ 16 (26)
T smart00343 1 KCYNCGKEGHIARDCP 16 (26)
T ss_pred CCccCCCCCcchhhCC
Confidence 5889999999888886
No 40
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=55.40 E-value=6.4 Score=40.14 Aligned_cols=32 Identities=25% Similarity=0.628 Sum_probs=26.5
Q ss_pred chhhHHHHHHHhcccCcCccCcccccCCCCCcccccCCCcccc
Q psy15832 592 NSKKVNRILRRMGMEGFNKKFPFIDALPATPPQCRENGTGFKN 634 (2157)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (2157)
.-..+.++|+|+|+. |---||+|+.||.-|..
T Consensus 39 ~L~hiak~lkr~g~~-----------Llv~Pa~CkkCGfef~~ 70 (97)
T COG3357 39 HLEHIAKSLKRKGKR-----------LLVRPARCKKCGFEFRD 70 (97)
T ss_pred HHHHHHHHHHhCCce-----------EEecChhhcccCccccc
Confidence 345788999999986 45679999999999976
No 41
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=55.20 E-value=16 Score=41.81 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=47.6
Q ss_pred eeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccCCcccccCCCcccccCCc
Q psy15832 1609 PVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1609 vIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
.|-...++.+ +++. -+++|++|+.+.+|.+.+..+||. +...|+ ||||++..= .|.|+..
T Consensus 53 vv~~~~~~~~-~~~~--~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPG----tVGGAv~mN---------aGa~g~e 116 (257)
T PRK13904 53 AILGKNFDYI-KIDG--ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPG----TLGGLVKMN---------AGLKEYE 116 (257)
T ss_pred EEEccCcCeE-EEeC--CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCc----cHHHHHHhc---------CCcCccc
Confidence 3433457744 6655 379999999999999999999984 334443 799998751 4556666
Q ss_pred ccccccccc
Q psy15832 1685 QPEWKSQQH 1693 (2157)
Q Consensus 1685 V~s~~~qg~ 1693 (2157)
+.++...-+
T Consensus 117 i~d~l~~V~ 125 (257)
T PRK13904 117 ISNNLESIC 125 (257)
T ss_pred hheeEEEEE
Confidence 666554444
No 42
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=50.42 E-value=26 Score=41.01 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=40.3
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccC
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKI 1667 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAG 1667 (2157)
..+|.+..|+.| +++.+ .++|++|+.+.+|++.+..+||. +...|+ ||||++..
T Consensus 78 g~vi~~~~~~~i-~~~~~--~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~m 135 (302)
T PRK14650 78 FPIIYTGHLNKI-EIHDN--QIVAECGTNFEDLCKFALQNELSGLEFIYGLPG----TLGGAIWM 135 (302)
T ss_pred eEEEEECCcCcE-EEeCC--EEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCc----chhHHHHh
Confidence 355666568765 66643 69999999999999999999984 334443 78888765
No 43
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.90 E-value=17 Score=48.28 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=28.8
Q ss_pred CCcccccccccCcCcCCCCCCCcccccCCCCCCCCCCCC----CCCccccCCCCCC
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRA----PENVRCVNCKGDH 1910 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKspPRCVKCGEnHHdSKECpK----nsPPKCANCGGpH 1910 (2157)
....|..|...+ ...+|..||.......-|+. ..+..|.+|+..=
T Consensus 625 g~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El 673 (1121)
T PRK04023 625 GRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREP 673 (1121)
T ss_pred cCccCCCCCCcC-------CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCC
Confidence 567999998875 33677788775323344433 2356799998543
No 44
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=48.13 E-value=11 Score=48.33 Aligned_cols=57 Identities=23% Similarity=0.154 Sum_probs=29.7
Q ss_pred eeccccCchHHhhhHHHHhHhheeeecchhHHHHHHHhhCCchhhHHHHhhcchHhHHHHHHHHHhhh
Q psy15832 1489 ILTSVPWTEAEVNDLVKDVAAKVIAVKNLDWWKEMLEREGSLPKQVTEYFKDKSVCHDLKVKHVQGQV 1556 (2157)
Q Consensus 1489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fksa~e~HderVkkIqaQV 1556 (2157)
-.|.--|||.=+.-+.+-++.---|+ +|--|=+|-.|+...|+.+.. ..|.-+-+.+
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvL--------vLVPEI~Ltpq~~~rf~~rFg---~~v~vlHS~L 280 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVL--------VLVPEIALTPQLLARFKARFG---AKVAVLHSGL 280 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEE--------EEeccccchHHHHHHHHHHhC---CChhhhcccC
Confidence 34555677765543333333221110 122355666777777777766 5566555555
No 45
>KOG0119|consensus
Probab=42.62 E-value=16 Score=45.41 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=27.6
Q ss_pred CcccccccccCcCcCCCCCC-----CcccccCCCCCCCCCCC
Q psy15832 1860 VVQCYQCAKFGHTSKFCHNP-----VLCNVCYLPKLDQHTCR 1896 (2157)
Q Consensus 1860 P~QCFNCQRFGHTSayCKsp-----PRCVKCGEnHHdSKECp 1896 (2157)
-..|.+|+.-||.+..|... ..|..||.-+|-+.+|.
T Consensus 261 ~~~c~~cg~~~H~q~~cp~r~~~~~n~c~~cg~~gH~~~dc~ 302 (554)
T KOG0119|consen 261 NRACRNCGSTGHKQYDCPGRIPNTTNVCKICGPLGHISIDCK 302 (554)
T ss_pred cccccccCCCccccccCCcccccccccccccCCcccccccCC
Confidence 46899999999999999754 35666666666666664
No 46
>COG4031 Predicted metal-binding protein [General function prediction only]
Probab=41.22 E-value=12 Score=42.09 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=22.4
Q ss_pred CcccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCChhHHH
Q psy15832 1880 VLCNVCYLPKLDQHTCRAPENVRCVNCKGDHKPTEQRCPEMSR 1922 (2157)
Q Consensus 1880 PRCVKCGEnHHdSKECpKnsPPKCANCGGpHpANSRgCPVYKK 1922 (2157)
++| +||-+- + .+.+|.||+.+|.+ +|.+|..
T Consensus 1 ~~C-rCG~~l--~------~p~~Cl~Cg~~~av---~~~vy~~ 31 (227)
T COG4031 1 LIC-RCGAEL--S------SPAFCLNCGRRHAV---GCGVYVS 31 (227)
T ss_pred Ccc-ccCCcc--c------ccchhcccCCccee---Eeeeecc
Confidence 368 888863 1 35789999999875 6777753
No 47
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=40.90 E-value=13 Score=38.71 Aligned_cols=19 Identities=47% Similarity=1.078 Sum_probs=15.0
Q ss_pred CCccccCCCCCCCCCCCCChh
Q psy15832 1899 ENVRCVNCKGDHKPTEQRCPE 1919 (2157)
Q Consensus 1899 sPPKCANCGGpHpANSRgCPV 1919 (2157)
...+|.+|+|+|- ...||.
T Consensus 105 ~~v~CR~CkGdH~--T~~CPy 123 (128)
T PF12353_consen 105 SKVKCRICKGDHW--TSKCPY 123 (128)
T ss_pred ceEEeCCCCCCcc--cccCCc
Confidence 4678999999994 568986
No 48
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=39.59 E-value=13 Score=33.12 Aligned_cols=14 Identities=43% Similarity=1.082 Sum_probs=11.1
Q ss_pred cccccccccCcCcC
Q psy15832 1861 VQCYQCAKFGHTSK 1874 (2157)
Q Consensus 1861 ~QCFNCQRFGHTSa 1874 (2157)
.+|.+|..|||++.
T Consensus 2 ~kC~~CG~~GH~~t 15 (40)
T PF15288_consen 2 VKCKNCGAFGHMRT 15 (40)
T ss_pred cccccccccccccc
Confidence 47888999998863
No 49
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=35.91 E-value=49 Score=39.24 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=38.8
Q ss_pred cceeeccCCCceEEEe--cCC-CEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccC
Q psy15832 1607 MFPVDLEAMDTILSVD--EEK-KTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKI 1667 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID--~EN-MTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAG 1667 (2157)
..+|.+ +|+.+ +++ ..+ .+++|++||.+.+|++.+..+||. +...|+ ||||++..
T Consensus 64 g~vI~~-~~~~~-~~~~~~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~m 125 (334)
T PRK00046 64 GTVLLN-RIKGI-EVLSEDDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPG----TVGAAPIQ 125 (334)
T ss_pred EEEEEe-cCCce-EEEecCCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCc----chhHHHHh
Confidence 345555 47755 553 222 379999999999999999999983 333443 78888765
No 50
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=35.23 E-value=16 Score=31.35 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=17.1
Q ss_pred CCcccccccccCcCcCCCCC
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHN 1878 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKs 1878 (2157)
.--+|+.|.+.||....|..
T Consensus 7 ~~Y~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 7 PGYVCHRCGQKGHWIQDCPT 26 (32)
T ss_pred CCCEeecCCCCCccHhHCCC
Confidence 44589999999999999975
No 51
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=33.98 E-value=45 Score=38.60 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=35.6
Q ss_pred cceeeccC-CCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccC
Q psy15832 1607 MFPVDLEA-MDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKI 1667 (2157)
Q Consensus 1607 ~ivIDLSr-LNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAG 1667 (2157)
..+|.+.+ ++. ++++. +|++|+.+.+|++.+..+||. +...|+ ||||++..
T Consensus 58 g~vI~l~~~~~~-~~~~~-----~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~m 113 (273)
T PRK14651 58 ERVIRLGGEFAE-WDLDG-----WVGGGVPLPGLVRRAARLGLSGLEGLVGIPA----QVGGAVKM 113 (273)
T ss_pred eEEEEECCccee-EeECC-----EEECCCcHHHHHHHHHHCCCcchhhhcCCCc----chhhHHHh
Confidence 34555544 443 34432 699999999999999999983 333333 79998766
No 52
>KOG3794|consensus
Probab=31.18 E-value=17 Score=44.22 Aligned_cols=23 Identities=43% Similarity=0.875 Sum_probs=17.4
Q ss_pred EEeeecC--CCCcccccccccCcCc
Q psy15832 1851 IECAPFI--QRVVQCYQCAKFGHTS 1873 (2157)
Q Consensus 1851 VKVEPYV--prP~QCFNCQRFGHTS 1873 (2157)
+++.||- -+.++|.+|.+|||+.
T Consensus 113 irdqPFGiqVRNVrC~kChkwGH~n 137 (453)
T KOG3794|consen 113 IRDQPFGIQVRNVRCLKCHKWGHIN 137 (453)
T ss_pred ccccccceEeeeeeEEeeccccccc
Confidence 4555662 2578999999999985
No 53
>PRK05978 hypothetical protein; Provisional
Probab=30.95 E-value=34 Score=36.96 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=22.6
Q ss_pred CcccccCCCCCCCCCCCCCCCccccCCC---CCCCCCCCCChhHH
Q psy15832 1880 VLCNVCYLPKLDQHTCRAPENVRCVNCK---GDHKPTEQRCPEMS 1921 (2157)
Q Consensus 1880 PRCVKCGEnHHdSKECpKnsPPKCANCG---GpHpANSRgCPVYK 1921 (2157)
-||.+||+-+- -+.-- .-..+|.+|+ +.|++.| =|.|.
T Consensus 34 grCP~CG~G~L-F~g~L-kv~~~C~~CG~~~~~~~a~D--gpAy~ 74 (148)
T PRK05978 34 GRCPACGEGKL-FRAFL-KPVDHCAACGEDFTHHRADD--LPAYL 74 (148)
T ss_pred CcCCCCCCCcc-ccccc-ccCCCccccCCccccCCccc--cCcch
Confidence 57888888753 22111 2467899998 3455554 34453
No 54
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=30.50 E-value=44 Score=37.79 Aligned_cols=60 Identities=7% Similarity=0.142 Sum_probs=40.1
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCC-c----ccccccCC-CcceecccccC
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRG-W----TIPVVVEL-DDVTVGLLTKI 1667 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~G-L----fpPVVPEf-dgATVGGnIAG 1667 (2157)
...||+.++ ..-.|..+...+++=++|++.+|.+...-.+ | ..-..|-. ...|+||+|++
T Consensus 43 ~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~~~~~L~~aa~~va~~qIRN~gTlGGNl~~ 108 (257)
T TIGR03312 43 KVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNELTPAALKEALGFVYSRHIRNQATIGGEIAA 108 (257)
T ss_pred CEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcchHHHHHHHHHHhCCHHHhccccHHHHhhc
Confidence 467998887 5667777788999999999999976421111 0 00012211 24699999997
No 55
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=29.28 E-value=40 Score=45.77 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHhccccCCC--Cceeeeeehh
Q psy15832 1377 SGCVQRALVLLAKHWRPAP--DLYSVVVERN 1405 (2157)
Q Consensus 1377 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 1405 (2157)
.+.|.-||.+|..----|| .+-.|-+-+|
T Consensus 100 e~AvRtalAilTEGvvaAPlEGI~~V~i~kN 130 (1337)
T PRK14714 100 EGAVRTAVALLTEGVVAAPIEGIARVEIKKN 130 (1337)
T ss_pred HHHHHHHHHHHhcceeeccccccceeEeeec
Confidence 4567777777766655554 4445555555
No 56
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=27.92 E-value=70 Score=38.50 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=49.1
Q ss_pred cceeeccCCCceEEE---ecCCCEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccCCcccccCCCccc
Q psy15832 1607 MFPVDLEAMDTILSV---DEEKKTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKILQYIWRQAGRVA 1679 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEI---D~ENMTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAGTdVEGSSSHRhG 1679 (2157)
.++|.+.+|+.+ ++ +.....++|++|+.+.+|++.++.+||. +...|+ ||||++.. =.|
T Consensus 74 G~VI~l~~~~~i-~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPG----TVGGAv~m---------NAG 139 (354)
T PRK14648 74 GLMLSLRRFRSL-HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPG----SVGGAAYM---------NAR 139 (354)
T ss_pred EEEEEeCCcCce-EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCc----chhhHhhh---------cCC
Confidence 466777567765 44 2333479999999999999999999984 333443 78888765 145
Q ss_pred ccCCcccccccccc
Q psy15832 1680 HFDPAQPEWKSQQH 1693 (2157)
Q Consensus 1680 ~Fd~TV~s~~~qg~ 1693 (2157)
.|+..+.+....-+
T Consensus 140 AyG~ei~d~l~~V~ 153 (354)
T PRK14648 140 CYGRAIADCFHSAR 153 (354)
T ss_pred ccceEhhheEEEEE
Confidence 56655655444333
No 57
>PRK09799 putative oxidoreductase; Provisional
Probab=27.13 E-value=64 Score=36.46 Aligned_cols=57 Identities=9% Similarity=0.168 Sum_probs=41.4
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccc---------cCC-CcceecccccC
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVV---------VEL-DDVTVGLLTKI 1667 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVV---------PEf-dgATVGGnIAG 1667 (2157)
....||+.++ ..-.|..+...+++-++|++.+|.+.. ..++.. |.. ..+||||+|+.
T Consensus 43 ~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~----~~~~~L~~a~~~vas~qIRN~aTiGGNl~~ 109 (258)
T PRK09799 43 KKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR----FIPAALREALGFVYSRHLRNQSTIGGEIAA 109 (258)
T ss_pred CCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc----ccHHHHHHHHHHhCCHHHhccchhHHHhhc
Confidence 3568999987 577788888999999999999998753 111111 111 24699999997
No 58
>COG2219 PRI2 Eukaryotic-type DNA primase, large subunit [DNA replication, recombination, and repair]
Probab=26.25 E-value=37 Score=40.64 Aligned_cols=25 Identities=44% Similarity=0.699 Sum_probs=22.5
Q ss_pred CcchHHHHHHHHhhcccCCcccccc
Q psy15832 851 SIFPKCIQNRLAKIRSTHNLPIYNI 875 (2157)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (2157)
+.||.||+|-|+++++-+|||-+--
T Consensus 239 e~fPPCik~iL~~l~~G~~l~h~~R 263 (363)
T COG2219 239 EAFPPCIKNILAGLKSGENLPHAAR 263 (363)
T ss_pred CcCChHHHHHHHHhhcCCCchHHHH
Confidence 8999999999999999999986543
No 59
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.15 E-value=42 Score=42.77 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=0.0
Q ss_pred CcccccccccCcCcCCCCCCCcccccCCCCCCCCCCCCCCCccccCCCCCC
Q psy15832 1860 VVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDH 1910 (2157)
Q Consensus 1860 P~QCFNCQRFGHTSayCKspPRCVKCGEnHHdSKECpKnsPPKCANCGGpH 1910 (2157)
+.+|.+|-.. =+-+.=.+..+|.+||-.. .+.+|.+|++..
T Consensus 392 ~~~C~~C~~~-L~~h~~~~~l~Ch~CG~~~---------~p~~Cp~Cgs~~ 432 (665)
T PRK14873 392 PARCRHCTGP-LGLPSAGGTPRCRWCGRAA---------PDWRCPRCGSDR 432 (665)
T ss_pred eeECCCCCCc-eeEecCCCeeECCCCcCCC---------cCccCCCCcCCc
No 60
>KOG0720|consensus
Probab=24.61 E-value=25 Score=43.59 Aligned_cols=37 Identities=16% Similarity=0.473 Sum_probs=27.9
Q ss_pred CCCcccccCCCCCCCCCCCC---CCCccccCCCCCCCCCCCC
Q psy15832 1878 NPVLCNVCYLPKLDQHTCRA---PENVRCVNCKGDHKPTEQR 1916 (2157)
Q Consensus 1878 spPRCVKCGEnHHdSKECpK---nsPPKCANCGGpHpANSRg 1916 (2157)
+..+|-+||..|. .-|+. ....-|+-|+.-|+|-+..
T Consensus 326 ntI~CskC~n~H~--r~~T~rs~s~AR~C~~C~~~H~AKdgd 365 (490)
T KOG0720|consen 326 NTIFCSKCGNTHF--RVLTSRSPSQARWCAECGVKHPAKDGD 365 (490)
T ss_pred hheehhhhcCcce--eeeecCChhhhHHHHHhCccCccccCC
Confidence 4688999999873 56654 2456799999999997744
No 61
>KOG0119|consensus
Probab=24.54 E-value=48 Score=41.54 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=31.1
Q ss_pred CcccccCCCCCCCCCCCCC---CCccccCCC-CCCCCCCCCChhH
Q psy15832 1880 VLCNVCYLPKLDQHTCRAP---ENVRCVNCK-GDHKPTEQRCPEM 1920 (2157)
Q Consensus 1880 PRCVKCGEnHHdSKECpKn---sPPKCANCG-GpHpANSRgCPVY 1920 (2157)
.+|..||..+|..-+|+.. ..-.|.+|+ ..|.+ ++|++.
T Consensus 262 ~~c~~cg~~~H~q~~cp~r~~~~~n~c~~cg~~gH~~--~dc~~~ 304 (554)
T KOG0119|consen 262 RACRNCGSTGHKQYDCPGRIPNTTNVCKICGPLGHIS--IDCKVN 304 (554)
T ss_pred ccccccCCCccccccCCcccccccccccccCCccccc--ccCCCc
Confidence 6899999999999999762 233899999 46864 688875
No 62
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=22.36 E-value=1.1e+02 Score=36.06 Aligned_cols=55 Identities=11% Similarity=0.245 Sum_probs=41.9
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCc----ccccccCCCcceecccc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGW----TIPVVVELDDVTVGLLT 1665 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GL----fpPVVPEfdgATVGGnI 1665 (2157)
..++|.+..++ ..+++.+.-.++|++|.+..+|++.++.+|| ++...|+ ||||++
T Consensus 64 ~gvvi~~~~~~-~~~~~~~~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPG----svGgav 122 (291)
T COG0812 64 GGVVIKLGKLN-FIEIEGDDGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPG----SVGGAV 122 (291)
T ss_pred ceEEEEccccc-ceeeeccCCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCc----ccchhh
Confidence 34666666666 5677777779999999999999999999997 2334444 688874
No 63
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=22.03 E-value=50 Score=29.68 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.8
Q ss_pred CCcccccCCCCCCCCCCC
Q psy15832 1879 PVLCNVCYLPKLDQHTCR 1896 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECp 1896 (2157)
..+|-+|++.+|.+.+|+
T Consensus 4 ~~~CqkC~~~GH~tyeC~ 21 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECP 21 (42)
T ss_pred CCcCcccCCCCcchhhCC
Confidence 478999999999888987
No 64
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.80 E-value=1.2e+02 Score=37.49 Aligned_cols=65 Identities=14% Similarity=0.361 Sum_probs=0.0
Q ss_pred hHHHhhccccCceEEEEEeccccccCCceeEEeeecCCCCcccccccccCcCcCCCC---------CCCcccccCCCCCC
Q psy15832 1821 NLLLESIDARQFRVKSVQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCH---------NPVLCNVCYLPKLD 1891 (2157)
Q Consensus 1821 ELIKELISLRgFEVISVRRLGRRiVTPfyrVKVEPYVprP~QCFNCQRFGHTSayCK---------spPRCVKCGEnHHd 1891 (2157)
+.+.+.+.....-++.+-|-|.. ...+|..|... -.=..|. +..+|.+||-...
T Consensus 189 ~~i~~~l~~g~qvLvflnrrGya---------------~~~~C~~Cg~~-~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~- 251 (505)
T TIGR00595 189 TAIEQTLAAGEQSILFLNRRGYS---------------KNLLCRSCGYI-LCCPNCDVSLTYHKKEGKLRCHYCGYQEP- 251 (505)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCC---------------CeeEhhhCcCc-cCCCCCCCceEEecCCCeEEcCCCcCcCC-
Q ss_pred CCCCCCCCCccccCCCCC
Q psy15832 1892 QHTCRAPENVRCVNCKGD 1909 (2157)
Q Consensus 1892 SKECpKnsPPKCANCGGp 1909 (2157)
.+..|.+|++.
T Consensus 252 -------~~~~Cp~C~s~ 262 (505)
T TIGR00595 252 -------IPKTCPQCGSE 262 (505)
T ss_pred -------CCCCCCCCCCC
Done!