Query psy15832
Match_columns 2157
No_of_seqs 369 out of 873
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 22:32:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i0k_A Oxidoreductase; MIX alp 99.4 4.4E-13 1.5E-17 154.7 9.7 122 1578-1701 56-194 (561)
2 4feh_A Oxidoreductase DPRE1; a 99.4 5.3E-13 1.8E-17 152.2 9.6 94 1606-1702 88-184 (481)
3 4bby_A Alkyldihydroxyacetoneph 99.4 3.7E-13 1.2E-17 157.8 6.0 94 1605-1701 253-350 (658)
4 2vfr_A Xylitol oxidase, aldito 99.3 3.9E-12 1.3E-16 141.0 6.9 93 1606-1702 61-156 (422)
5 3pm9_A Putative oxidoreductase 99.1 5E-11 1.7E-15 135.8 7.2 91 1607-1700 97-191 (476)
6 1f0x_A DLDH, D-lactate dehydro 99.1 1.4E-10 4.7E-15 135.5 8.9 79 1603-1683 92-172 (571)
7 2bvf_A 6-hydroxy-D-nicotine ox 99.1 1.6E-10 5.4E-15 129.8 8.7 115 1579-1703 60-177 (459)
8 2uuu_A Alkyldihydroxyacetoneph 99.0 1.3E-10 4.5E-15 135.5 5.1 87 1606-1693 185-275 (584)
9 1w1o_A Cytokinin dehydrogenase 99.0 7.2E-10 2.5E-14 126.7 9.2 94 1606-1702 115-216 (534)
10 3js8_A Cholesterol oxidase; ch 99.0 8.1E-10 2.8E-14 129.0 9.5 94 1606-1701 78-190 (540)
11 3rja_A Carbohydrate oxidase; p 98.9 6.8E-10 2.3E-14 126.2 7.6 94 1605-1702 81-178 (473)
12 1wvf_A 4-cresol dehydrogenase 98.9 1.9E-09 6.4E-14 123.0 10.5 91 1606-1701 103-198 (520)
13 1e8g_A Vanillyl-alcohol oxidas 98.9 3.3E-09 1.1E-13 122.4 11.0 92 1606-1702 117-215 (560)
14 3fw9_A Reticuline oxidase; BI- 98.9 1.5E-09 5.1E-14 124.6 7.2 84 1607-1693 92-180 (495)
15 3tsh_A Pollen allergen PHL P 4 98.9 1.6E-09 5.3E-14 122.9 7.2 87 1605-1693 99-189 (500)
16 2wdx_A Putative hexose oxidase 98.9 1.9E-09 6.4E-14 124.0 7.9 94 1606-1702 102-201 (523)
17 2y3s_A TAML; oxidoreductase; H 98.9 2.9E-09 1E-13 122.7 8.5 94 1606-1702 103-202 (530)
18 2exr_A Cytokinin dehydrogenase 98.9 2.2E-09 7.5E-14 123.3 7.3 92 1606-1702 106-209 (524)
19 2ipi_A Aclacinomycin oxidoredu 98.8 3.3E-09 1.1E-13 121.8 8.6 93 1606-1701 100-198 (521)
20 3pop_A GILR oxidase; FAD bindi 98.8 4.1E-09 1.4E-13 121.1 7.2 108 1606-1722 79-192 (501)
21 1zr6_A Glucooligosaccharide ox 98.8 1.2E-08 4.1E-13 116.5 9.2 91 1606-1702 88-182 (503)
22 3vte_A Tetrahydrocannabinolic 98.7 7.2E-09 2.5E-13 120.0 6.8 85 1606-1693 99-188 (518)
23 2yvs_A Glycolate oxidase subun 98.6 2.7E-08 9.2E-13 104.6 4.7 77 1619-1702 1-80 (219)
24 1hsk_A UDP-N-acetylenolpyruvoy 98.3 3.3E-07 1.1E-11 100.3 6.0 81 1607-1702 93-181 (326)
25 3tx1_A UDP-N-acetylenolpyruvoy 97.8 1.9E-05 6.7E-10 87.1 5.9 80 1607-1701 99-186 (322)
26 2a51_A Nucleocapsid protein; s 97.7 2.1E-05 7.2E-10 63.9 3.9 36 1861-1896 1-38 (39)
27 2bl6_A Nucleocapsid protein P1 97.7 1.4E-05 4.9E-10 64.3 2.9 35 1862-1896 2-36 (37)
28 2lli_A Protein AIR2; RNA surve 97.7 3.1E-05 1.1E-09 74.7 4.8 56 1859-1919 3-60 (124)
29 3nyb_B Protein AIR2; polya RNA 97.6 1.7E-05 5.7E-10 74.4 2.1 58 1860-1919 5-64 (83)
30 2cqf_A RNA-binding protein LIN 97.6 4.5E-05 1.5E-09 67.6 4.6 50 1858-1907 5-57 (63)
31 1a1t_A Nucleocapsid protein; s 97.6 3.1E-05 1.1E-09 66.3 2.8 39 1859-1897 11-51 (55)
32 2ec7_A GAG polyprotein (PR55GA 97.5 4.8E-05 1.6E-09 64.5 3.5 40 1858-1897 4-45 (49)
33 2ihx_A Nucleocapsid (NC) prote 97.5 4.4E-05 1.5E-09 67.1 3.3 39 1859-1897 3-48 (61)
34 2lli_A Protein AIR2; RNA surve 97.4 0.00012 4.2E-09 70.6 5.0 57 1861-1919 23-82 (124)
35 2li8_A Protein LIN-28 homolog 97.4 9.4E-05 3.2E-09 68.0 3.5 40 1858-1897 22-64 (74)
36 1cl4_A Protein (GAG polyprotei 97.2 0.00013 4.4E-09 63.5 2.2 36 1862-1897 3-48 (60)
37 3ts2_A Protein LIN-28 homolog 97.1 0.00016 5.5E-09 72.9 2.9 38 1860-1897 97-137 (148)
38 1uxy_A MURB, uridine diphospho 96.9 0.0016 5.5E-08 72.5 8.7 85 1607-1701 58-149 (340)
39 3i99_A UDP-N-acetylenolpyruvoy 96.7 0.0016 5.3E-08 73.4 6.1 80 1607-1700 74-164 (357)
40 2gqt_A UDP-N-acetylenolpyruvyl 96.5 0.00092 3.1E-08 72.6 2.3 79 1607-1701 61-144 (268)
41 2li8_A Protein LIN-28 homolog 95.9 0.0042 1.4E-07 57.2 3.5 49 1869-1919 2-64 (74)
42 2a51_A Nucleocapsid protein; s 93.7 0.055 1.9E-06 44.0 3.8 37 1880-1918 1-38 (39)
43 3nyb_B Protein AIR2; polya RNA 93.3 0.026 9E-07 53.1 1.5 39 1859-1897 23-64 (83)
44 2ec7_A GAG polyprotein (PR55GA 93.2 0.057 1.9E-06 45.8 3.4 39 1879-1919 6-45 (49)
45 3ts2_A Protein LIN-28 homolog 92.1 0.065 2.2E-06 54.2 2.7 40 1879-1920 97-138 (148)
46 2cqf_A RNA-binding protein LIN 91.9 0.15 5E-06 45.4 4.4 39 1879-1919 7-47 (63)
47 2bl6_A Nucleocapsid protein P1 91.8 0.082 2.8E-06 42.5 2.5 34 1881-1918 2-36 (37)
48 1a1t_A Nucleocapsid protein; s 91.6 0.072 2.5E-06 45.6 2.0 39 1879-1919 12-51 (55)
49 1nc8_A Nucleocapsid protein; H 90.0 0.13 4.5E-06 40.0 2.0 22 1859-1880 5-26 (29)
50 2ihx_A Nucleocapsid (NC) prote 88.4 0.22 7.6E-06 43.8 2.5 40 1879-1920 4-49 (61)
51 1cl4_A Protein (GAG polyprotei 87.7 0.21 7E-06 43.5 1.8 37 1881-1919 3-48 (60)
52 1dsq_A Nucleic acid binding pr 86.6 0.3 1E-05 37.3 2.0 19 1861-1879 3-21 (26)
53 1a6b_B Momulv, zinc finger pro 84.4 0.48 1.6E-05 40.0 2.4 22 1859-1880 9-30 (40)
54 1u6p_A GAG polyprotein; MLV, A 81.1 0.72 2.5E-05 41.2 2.3 25 1857-1881 20-44 (56)
55 2ysa_A Retinoblastoma-binding 57.6 3.2 0.00011 37.0 1.1 17 1861-1877 8-24 (55)
56 1ffv_C CUTM, flavoprotein of c 54.3 3.3 0.00011 44.9 0.8 60 1606-1667 48-118 (287)
57 1dsq_A Nucleic acid binding pr 53.1 6 0.00021 30.2 1.8 18 1880-1897 3-20 (26)
58 2ofg_X Zinc-transporting ATPas 42.9 51 0.0017 30.3 6.7 63 1619-1684 39-108 (111)
59 1nc8_A Nucleocapsid protein; H 41.1 11 0.00038 29.3 1.6 19 1879-1897 6-24 (29)
60 1a6b_B Momulv, zinc finger pro 37.6 17 0.00059 30.8 2.3 19 1879-1897 10-28 (40)
61 1u6p_A GAG polyprotein; MLV, A 34.4 16 0.00054 32.8 1.7 19 1879-1897 23-41 (56)
62 2ysa_A Retinoblastoma-binding 28.3 18 0.00063 32.3 1.1 19 1879-1897 7-25 (55)
63 1n62_C Carbon monoxide dehydro 27.7 16 0.00055 39.6 0.8 60 1606-1667 48-118 (288)
64 2hqh_E Restin; beta/BETA struc 22.4 26 0.00089 28.2 0.8 18 1861-1878 4-21 (26)
65 4ayb_P DNA-directed RNA polyme 22.1 53 0.0018 29.4 2.8 28 1880-1908 4-31 (48)
66 2gmg_A Hypothetical protein PF 20.9 26 0.0009 34.9 0.8 28 594-632 50-77 (105)
67 3pqi_A Gene product 138; beta- 20.9 41 0.0014 37.1 2.3 75 1607-1702 20-95 (247)
68 2w3s_A Xanthine dehydrogenase; 20.3 32 0.0011 40.1 1.4 56 1606-1667 219-287 (462)
No 1
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=99.39 E-value=4.4e-13 Score=154.75 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=99.1
Q ss_pred hccCCCCCeeecCCCCccccccCcccCCCcceeec-cCCCceEEEec--CCCEEEEcCCCCHHHHHHHhccCCccccccc
Q psy15832 1578 IKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDL-EAMDTILSVDE--EKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV 1654 (2157)
Q Consensus 1578 ~~hGrk~~MCTARPgWSTnSTRp~kYKrs~ivIDL-SrLNRILEID~--ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP 1654 (2157)
++++.+..++.|..+|...+..........++||+ ++||+| +||+ ++++|+|||||++++|.+++.++||++|++|
T Consensus 56 ~~~~~~v~~~G~G~s~~~~~l~~~~~~~~gvvIdl~~~l~~i-~vd~~~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~ 134 (561)
T 2i0k_A 56 HEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGI-TVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLP 134 (561)
T ss_dssp HHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCE-EEECCSSSCEEEEETTSBHHHHHHHHHHTTEECSSCC
T ss_pred HHCCCcEEEECCCCCcccccccCCCcCCCeEEEechhhCCce-EecCcCCccEEEEcCCCCHHHHHHHHHHcCCcccccC
Confidence 34666677777777775444332212234689999 899998 9999 8999999999999999999999999999999
Q ss_pred CCCcceecccccCCcccccC----------CCcccccCCcccc---ccccccEE-EEeccc
Q psy15832 1655 ELDDVTVGLLTKILQYIWRQ----------AGRVAHFDPAQPE---WKSQQHAI-VHLCSL 1701 (2157)
Q Consensus 1655 EfdgATVGGnIAGTdVEGSS----------SHRhG~Fd~TV~s---~~~qg~~~-Vh~CS~ 1701 (2157)
+.+++||||+|+. ++||.+ ++++|.+.++|.+ +..+|+++ +..|++
T Consensus 135 ~~~~~TvGG~i~~-~~~G~~l~~gG~~~~s~~~~G~~~d~V~~~evV~~dG~~~~~~~~~~ 194 (561)
T 2i0k_A 135 APGVLSIGGALAV-NAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQR 194 (561)
T ss_dssp SCTTCBHHHHHHT-TCCCSCCCCTTCCCCTTCCSSCGGGGEEEEEEEEECSSSEEEEEEET
T ss_pred CCCCcccCCCccc-CCcccccccCCcccccccccccHhheEEEEEEEeCCCCEEEeeeccC
Confidence 9999999999986 999987 9999999999999 56677632 344665
No 2
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=99.38 E-value=5.3e-13 Score=152.23 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=89.1
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCcc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQ 1685 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV 1685 (2157)
..++||+++||+|++||+++++|+|||||++++|.+++.++||++|+.|+..++||||+|+. ++||++|+++|.|.++|
T Consensus 88 ~gvvIdl~~l~~i~~~d~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~g~~~~tvGGaia~-~a~G~~~~~~G~~~d~V 166 (481)
T 4feh_A 88 GGLVIDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAIAC-DIHGKNHHSAGSFGNHV 166 (481)
T ss_dssp TSEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHGGGTEECSCCCSCSCCBHHHHHHT-TCCCTTHHHHCCGGGGE
T ss_pred CeEEEECccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCEEEEeCCcCccccCCcccc-ccCCCCcccCCCccceE
Confidence 45899999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cc---ccccccEEEEecccc
Q psy15832 1686 PE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1686 ~s---~~~qg~~~Vh~CS~~ 1702 (2157)
.+ +..+|+ ++.|++.
T Consensus 167 ~~~evV~~dG~--v~~~s~~ 184 (481)
T 4feh_A 167 RSMDLLTADGE--IRHLTPT 184 (481)
T ss_dssp EEEEEECTTSC--EEEECSS
T ss_pred eEEEEEeCCCC--EEEeCCC
Confidence 98 678999 7779876
No 3
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.35 E-value=3.7e-13 Score=157.76 Aligned_cols=94 Identities=20% Similarity=0.168 Sum_probs=85.5
Q ss_pred CCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCccccccc-CCCcceecccccCCcccccCCCcccccCC
Q psy15832 1605 SSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV-ELDDVTVGLLTKILQYIWRQAGRVAHFDP 1683 (2157)
Q Consensus 1605 rs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP-EfdgATVGGnIAGTdVEGSSSHRhG~Fd~ 1683 (2157)
+..+.||+++||+||+||+++++|+|||||++.+|.++|.++||+||++| ++..+||||+||. ...|..+.+||.+.+
T Consensus 253 ~ggVvLDlsrMnrIleiD~~~~~atVeaGv~~~~L~~~L~~~Gl~lp~dP~S~~~aTIGG~iAt-na~G~~s~rYG~~~d 331 (658)
T 4bby_A 253 RTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST-RASGMKKNIYGNIED 331 (658)
T ss_dssp SCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHHTEECCCCCTTTTTCBHHHHHHH-TCCCTTHHHHCCHHH
T ss_pred CcEEEEECccCCCcEEEcCCCCEEEEecCchHHHHHHHHHHcCCccCCCCCCccccEEeehhhc-CCCCCCccCcCCHHH
Confidence 34588999999999999999999999999999999999999999999999 6788999999998 888899999999999
Q ss_pred cccc---ccccccEEEEeccc
Q psy15832 1684 AQPE---WKSQQHAIVHLCSL 1701 (2157)
Q Consensus 1684 TV~s---~~~qg~~~Vh~CS~ 1701 (2157)
+|.. ...+|+ |..+++
T Consensus 332 ~VlgleVVlpdG~--i~~~~~ 350 (658)
T 4bby_A 332 LVVHMKVVTPRGV--IEKSCQ 350 (658)
T ss_dssp HEEEEEEEETTEE--EECSCC
T ss_pred heeeEEEEeCCCc--cccccc
Confidence 9999 778887 554443
No 4
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=99.25 E-value=3.9e-12 Score=141.05 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=85.8
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCcc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQ 1685 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV 1685 (2157)
..++||+++||+|++||+++++|+|||||++++|.+++.++||++|..++.+++||||+|++ ++||.+ +++|.+.++|
T Consensus 61 ~g~vi~l~~l~~i~~~d~~~~~v~v~aG~~l~~l~~~l~~~Gl~l~~~~~~~~~tvGG~i~~-~~~G~~-~~~G~~~d~v 138 (422)
T 2vfr_A 61 GGVLLSLAGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSVAT-GTHGSG-VGNGSLASVV 138 (422)
T ss_dssp TCEEECSTTSCCCEEEETTTTEEEEETTCBHHHHHHHHHHTTEECSCCCSSSCSBHHHHHHH-TCCCCC-TTCCCGGGGE
T ss_pred CcEEEEhhhCCCcEEEcCCCCEEEEcCCCCHHHHHHHHHHcCCcccCCCCCCCeeHHHHHhc-CCCCCC-cccCcHHHhe
Confidence 46899999999999999999999999999999999999999999986678899999999999 999976 7999999999
Q ss_pred cc---ccccccEEEEecccc
Q psy15832 1686 PE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1686 ~s---~~~qg~~~Vh~CS~~ 1702 (2157)
.+ +..+|+ ++.|++-
T Consensus 139 ~~~~vv~~~G~--~~~~~~~ 156 (422)
T 2vfr_A 139 REVELVTADGS--TVVIARG 156 (422)
T ss_dssp EEEEEECTTSC--EEEEETT
T ss_pred EEEEEEeCCCC--EEEeCCC
Confidence 99 678999 7778874
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=99.11 E-value=5e-11 Score=135.84 Aligned_cols=91 Identities=14% Similarity=0.043 Sum_probs=83.0
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccC-CCcceecccccCCcccccCCCcccccCCcc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVE-LDDVTVGLLTKILQYIWRQAGRVAHFDPAQ 1685 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPE-fdgATVGGnIAGTdVEGSSSHRhG~Fd~TV 1685 (2157)
.++||+++||+|++||+++++++|||||++.+|.+++.++||++|++|. ...+||||+++. ..+|..+++||.+.++|
T Consensus 97 gvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~-nagG~~~~~yG~~~d~V 175 (476)
T 3pm9_A 97 EVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLST-NAGGTAALAYGLARDMA 175 (476)
T ss_dssp CEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHH-TCCCTTHHHHCCHHHHE
T ss_pred cEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCC-CCCCCcccccCcHHHhe
Confidence 6899999999999999999999999999999999999999999999994 446999999997 77888899999999999
Q ss_pred cc---ccccccEEEEecc
Q psy15832 1686 PE---WKSQQHAIVHLCS 1700 (2157)
Q Consensus 1686 ~s---~~~qg~~~Vh~CS 1700 (2157)
.+ +..+|+ ++.|+
T Consensus 176 ~~levV~~dG~--v~~~~ 191 (476)
T 3pm9_A 176 LGVEVVLADGR--VMNLL 191 (476)
T ss_dssp EEEEEECTTSC--EEECC
T ss_pred eEEEEEccCCe--EEEcC
Confidence 98 678899 66564
No 6
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=99.08 E-value=1.4e-10 Score=135.54 Aligned_cols=79 Identities=15% Similarity=0.051 Sum_probs=71.6
Q ss_pred cCCCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCC--CcceecccccCCcccccCCCcccc
Q psy15832 1603 YKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVEL--DDVTVGLLTKILQYIWRQAGRVAH 1680 (2157)
Q Consensus 1603 YKrs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEf--dgATVGGnIAGTdVEGSSSHRhG~ 1680 (2157)
|.+..++||+++||+|++||. .++|+|||||++.+|.+++.++||.+|++|+. .++||||+|+. +.+|..++++|.
T Consensus 92 ~~r~gvvIdl~rmn~I~~id~-~~~v~v~aGv~l~~L~~~l~~~Gl~~p~~~g~s~~~~tvGG~ia~-nagG~~~~~yG~ 169 (571)
T 1f0x_A 92 YDRDVVIISTLRLDKLHVLGK-GEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICN-NSGGSLVQRGPA 169 (571)
T ss_dssp CSSCEEEEECTTCCCEEEETT-TTEEEECTTCBHHHHHHHHGGGTEECSCCCGGGGGTCBHHHHHHT-TCCCSCTTSCSS
T ss_pred CcCceEEEECcccCCceeECC-CCeEEEcCCcCHHHHHHHHHhcCccCCcCCCccCCCceecccccC-CCCcccccCCCc
Confidence 445579999999999999994 68999999999999999999999999999954 36799999987 888999999999
Q ss_pred cCC
Q psy15832 1681 FDP 1683 (2157)
Q Consensus 1681 Fd~ 1683 (2157)
+.+
T Consensus 170 ~~d 172 (571)
T 1f0x_A 170 YTE 172 (571)
T ss_dssp CCS
T ss_pred hhh
Confidence 999
No 7
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=99.07 E-value=1.6e-10 Score=129.76 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=94.0
Q ss_pred ccCCCCCeeecCCCCccccccCcccCCCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCc
Q psy15832 1579 KTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDD 1658 (2157)
Q Consensus 1579 ~hGrk~~MCTARPgWSTnSTRp~kYKrs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdg 1658 (2157)
+++.+..++-|..+|..-+. ....++||+++||+| ++|+++++|+|||||++++|.+++.++||++|+... ..
T Consensus 60 ~~~~~~~v~ggGh~~~~~~~-----~~~gvvi~l~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~g~~-~~ 132 (459)
T 2bvf_A 60 DNGLEISVRSGGHNPNGYAT-----NDGGIVLDLRLMNSI-HIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMH-PK 132 (459)
T ss_dssp HHTCCEEEESSCCCTTCTTC-----CSSSEEEECTTCCCE-EEETTTTEEEEETTCBHHHHHHHHHTTTEEECCCSC-TT
T ss_pred HcCCcEEEEcCCcCCCCccc-----cCCeEEEECCCCCCE-EECCCCCEEEECCCCCHHHHHHHHHHcCCEecCCCC-CC
Confidence 34555555555455543221 234689999999998 999999999999999999999999999999998544 67
Q ss_pred ceecccccCCcccccCCCcccccCCcccc---ccccccEEEEeccccc
Q psy15832 1659 VTVGLLTKILQYIWRQAGRVAHFDPAQPE---WKSQQHAIVHLCSLLQ 1703 (2157)
Q Consensus 1659 ATVGGnIAGTdVEGSSSHRhG~Fd~TV~s---~~~qg~~~Vh~CS~~~ 1703 (2157)
++|||+++| |++|.++++||.+.++|.+ +..+|+ ++.|+..+
T Consensus 133 ~gi~G~~~g-Gg~g~~~~~~G~~~d~v~~~~vV~~~G~--i~~~~~~~ 177 (459)
T 2bvf_A 133 VGFCGLALN-GGVGFLTPKYGLASDNILGATLVTATGD--VIYCSDDE 177 (459)
T ss_dssp SBHHHHHTT-CCCCTTHHHHCCGGGGEEEEEEECTTSC--EEEEESSS
T ss_pred cccceeecC-CCCccccccccCHhHhEEEEEEEcCCCe--EEEeCCCC
Confidence 899999999 9999999999999999999 678999 67788653
No 8
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.01 E-value=1.3e-10 Score=135.49 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=80.7
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccC-CCcceecccccCCcccccCCCcccccCCc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVE-LDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPE-fdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
..++||+++||+|++||+++++|+|||||++.+|.+++.++||++|++|. +..+||||++++ +++|..+++||.+.++
T Consensus 185 g~vvidl~~mn~I~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~-na~G~~~~~yG~~~d~ 263 (584)
T 2uuu_A 185 FTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLAT-CSSGHQSDKYGDIEDM 263 (584)
T ss_dssp CEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHH-TCCCTTHHHHCCHHHH
T ss_pred CEEEEECCCCCccEEEcCCCCEEEECCCCcHHHHHHHHHHcCCeeCcCCCccCCeeEeeeccC-CCCcccccCcCcHHHh
Confidence 45789999999999999999999999999999999999999999999994 678999999999 8888999999999999
Q ss_pred ccc---cccccc
Q psy15832 1685 QPE---WKSQQH 1693 (2157)
Q Consensus 1685 V~s---~~~qg~ 1693 (2157)
|.+ +..+|+
T Consensus 264 V~~levVl~dG~ 275 (584)
T 2uuu_A 264 AVSFRTVTPTGT 275 (584)
T ss_dssp EEEEEEEETTEE
T ss_pred eeeEEEEeCCCC
Confidence 998 567777
No 9
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=98.97 E-value=7.2e-10 Score=126.74 Aligned_cols=94 Identities=17% Similarity=0.055 Sum_probs=84.1
Q ss_pred CcceeeccCCCce-----EEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccc
Q psy15832 1606 SMFPVDLEAMDTI-----LSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAH 1680 (2157)
Q Consensus 1606 s~ivIDLSrLNRI-----LEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~ 1680 (2157)
..++||+++||+| +++|+++++|+|||||++.+|.+++.++||+++..++...+||||++++ ++.|.++++||.
T Consensus 115 ~gvvi~l~~m~~i~~~~~~~~d~~~~~v~v~aGv~~~~l~~~~~~~Gl~~~~~~~~~~~tvGG~v~~-~g~g~~~~~yG~ 193 (534)
T 1w1o_A 115 GGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSN-AGISGQAFRHGP 193 (534)
T ss_dssp TSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTT-CCCSTTHHHHCC
T ss_pred CeEEEECccccccccCccEEEcCCCCEEEECCCcCHHHHHHHHHHCCCcccCCCCCCCEEeceeccC-CCcccccccccc
Confidence 4689999999999 9999999999999999999999999999997665557778999999998 666689999999
Q ss_pred cCCcccc---ccccccEEEEecccc
Q psy15832 1681 FDPAQPE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1681 Fd~TV~s---~~~qg~~~Vh~CS~~ 1702 (2157)
+.++|.+ +..+|+ ++.|+..
T Consensus 194 ~~d~v~~~evV~~dG~--v~~~~~~ 216 (534)
T 1w1o_A 194 QISNVLEMDVITGHGE--MVTCSKQ 216 (534)
T ss_dssp GGGSEEEEEEEETTSC--EEEEESS
T ss_pred HhhhEEEEEEEeCCcc--EEEECCC
Confidence 9999999 678999 7778874
No 10
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=98.97 E-value=8.1e-10 Score=129.04 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=82.0
Q ss_pred Ccceeecc-CCCceEEEecC--CCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccC--------
Q psy15832 1606 SMFPVDLE-AMDTILSVDEE--KKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQ-------- 1674 (2157)
Q Consensus 1606 s~ivIDLS-rLNRILEID~E--NMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSS-------- 1674 (2157)
..++||++ +||+| +||++ +++|+|||||++.+|.+++.++||.+|+.|+...+||||+|++ ++||.+
T Consensus 78 ~GVvIdls~~Ln~I-~vD~~~~~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi~~~TVGGaia~-gagG~~~~~~G~~~ 155 (540)
T 3js8_A 78 AVVLLDTTRYLTAM-SIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAI-NGHGTAIPAKGERR 155 (540)
T ss_dssp SEEEEETTTTCCCE-EEECSSSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSCSCSBHHHHHHT-TCCCCBCCCTTCCC
T ss_pred CeEEEECcCcCCCE-EECCCCCccEEEEccCCCHHHHHHHHHHcCCEEEecCCCCCeEEcccccC-CCCccccccccccc
Confidence 46899995 79999 99996 7999999999999999999999999999998888999999998 888886
Q ss_pred --CCcccccCCcccc---cccccc---EEEEeccc
Q psy15832 1675 --AGRVAHFDPAQPE---WKSQQH---AIVHLCSL 1701 (2157)
Q Consensus 1675 --SHRhG~Fd~TV~s---~~~qg~---~~Vh~CS~ 1701 (2157)
++++|.+.+.|.+ +..+|+ .+++.|++
T Consensus 156 ~~g~~~G~~~D~V~~levV~adG~~~~~~i~~~s~ 190 (540)
T 3js8_A 156 LAGASYGSISNLVLSLTAVVYDKASGAYALRKFAR 190 (540)
T ss_dssp CTTCCSSCGGGGEEEEEEEEEETTTTEEEEEEEET
T ss_pred ccccccccHHHhEEEEEEEcCCCCCceeeEEEeCC
Confidence 5899999999999 567776 23455775
No 11
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=98.95 E-value=6.8e-10 Score=126.23 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=83.7
Q ss_pred CCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCC-cccccccCCCcceecccccCCcccccCCCcccccCC
Q psy15832 1605 SSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRG-WTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDP 1683 (2157)
Q Consensus 1605 rs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~G-LfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~ 1683 (2157)
+..++||+++||+|.++|+++++|+||||+++++|.+++.++| +.+|. .....++|||.++| +++|-.++++|.+.+
T Consensus 81 ~~~vvIdl~~~~~i~~vd~~~~~v~v~aG~~~~~l~~~l~~~G~~~~p~-G~~~~vgvgG~~~g-gg~G~~~~~~G~~~D 158 (473)
T 3rja_A 81 NGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISH-GTCPGVGISGHFAH-GGFGFSSHMHGLAVD 158 (473)
T ss_dssp SSCEEEECTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHHHSEECCC-CSCTTCBHHHHHHT-CCCCTTHHHHCCGGG
T ss_pred CCeEEEECCCCCceEEEcCCCCEEEECCCCCHHHHHHHHHHcCCEEecc-CCCCCcEeeeeccC-CCCCcccccccchHh
Confidence 3458999999999999999999999999999999999999999 77764 44467899999999 999999999999999
Q ss_pred cccc---ccccccEEEEecccc
Q psy15832 1684 AQPE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1684 TV~s---~~~qg~~~Vh~CS~~ 1702 (2157)
+|.+ +..+|+ ++.|+..
T Consensus 159 ~v~~~~vV~a~G~--v~~~~~~ 178 (473)
T 3rja_A 159 SVVGVTVVLADGR--IVEASAT 178 (473)
T ss_dssp GEEEEEEECTTSC--EEEEETT
T ss_pred heeeEEEEecCCe--EEEeCCC
Confidence 9999 678999 6667764
No 12
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=98.93 E-value=1.9e-09 Score=123.02 Aligned_cols=91 Identities=19% Similarity=0.090 Sum_probs=78.3
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccc--cCCCcceecccccCCcccccCCCcccccCC
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVV--VELDDVTVGLLTKILQYIWRQAGRVAHFDP 1683 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVV--PEfdgATVGGnIAGTdVEGSSSHRhG~Fd~ 1683 (2157)
..++||+++||+||+||+++++|+|||||++++|.+++.++||++|++ |....+||||++++ ++. ..++||...+
T Consensus 103 ~gvvidl~~m~~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~igG~~~~-~g~--g~~~yG~~~d 179 (520)
T 1wvf_A 103 GQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMD-RGV--GYTPYGEHFM 179 (520)
T ss_dssp TCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHT-TCB--CSSTTCBGGG
T ss_pred CeEEEECCCCCceEEECCCCCEEEECCCCCHHHHHHHHHHcCCcccCCCCCCCCeeeeeecccC-CCc--CCccccchhh
Confidence 468999999999999999999999999999999999999999999987 65457999999766 333 3349999999
Q ss_pred cccc---ccccccEEEEeccc
Q psy15832 1684 AQPE---WKSQQHAIVHLCSL 1701 (2157)
Q Consensus 1684 TV~s---~~~qg~~~Vh~CS~ 1701 (2157)
+|.+ +..+|+ ++.|+.
T Consensus 180 ~v~~~evV~~dG~--v~~~~~ 198 (520)
T 1wvf_A 180 MQCGMEVVLANGD--VYRTGM 198 (520)
T ss_dssp GEEEEEEECTTSC--EEECGG
T ss_pred cEeeeEEEcCCCc--EEEeCC
Confidence 9998 678999 665664
No 13
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=98.90 E-value=3.3e-09 Score=122.44 Aligned_cols=92 Identities=16% Similarity=0.035 Sum_probs=78.5
Q ss_pred Ccceeec-cCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcc--cccccCC-CcceecccccCCcccccCCCccccc
Q psy15832 1606 SMFPVDL-EAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWT--IPVVVEL-DDVTVGLLTKILQYIWRQAGRVAHF 1681 (2157)
Q Consensus 1606 s~ivIDL-SrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLf--pPVVPEf-dgATVGGnIAGTdVEGSSSHRhG~F 1681 (2157)
..++||+ ++||+||+||+++++|+|||||++.+|.+++.++||+ +|++|.. ..+||||++++ ++ ...++||..
T Consensus 117 ~gvvidl~~~mn~il~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~tigG~~~~-~g--~g~~~yG~~ 193 (560)
T 1e8g_A 117 GSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE-RG--VGYTPYGDH 193 (560)
T ss_dssp TCEEEECTTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHHHHT-TC--BCSSTTCBT
T ss_pred CEEEEEchHhcCCeEEEcCCCCEEEEeCCCCHHHHHHHHHHcCCccccCCCCCCCCccchhhhccC-CC--CCcccceeH
Confidence 4689999 9999999999999999999999999999999999999 8888743 36899999876 33 334599999
Q ss_pred CCcccc---ccccccEEEEecccc
Q psy15832 1682 DPAQPE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1682 d~TV~s---~~~qg~~~Vh~CS~~ 1702 (2157)
.++|.+ +..+|+ ++.|+..
T Consensus 194 ~d~v~~l~vVl~dG~--v~~~~~~ 215 (560)
T 1e8g_A 194 WMMHSGMEVVLANGE--LLRTGMG 215 (560)
T ss_dssp GGGEEEEEEEETTSC--EEECGGG
T ss_pred HHheeeeEEEeCCCC--EEEecCc
Confidence 999998 678999 6667654
No 14
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=98.88 E-value=1.5e-09 Score=124.62 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=76.8
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccC--CcccccccCCCcceecccccCCcccccCCCcccccCCc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPR--GWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~--GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
.++||+++|++| +||+++++|+|||||++++|.+++.++ ||.+|.- ....++|||.++| |++|..++++|...++
T Consensus 92 gvvIdl~~m~~i-~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G-~~~~vgigG~~~g-Gg~G~~~~~~G~~~D~ 168 (495)
T 3fw9_A 92 FILIDLMNLNRV-SIDLESETAWVESGSTLGELYYAITESSSKLGFTAG-WCPTVGTGGHISG-GGFGMMSRKYGLAADN 168 (495)
T ss_dssp EEEEECTTCCCE-EEETTTTEEEEETTCBHHHHHHHHHHHCSSEECCCC-SCTTCBHHHHHHT-CCCCTTHHHHCCGGGG
T ss_pred eEEEECCCCCcE-EEeCCCCEEEEcCCCCHHHHHHHHHHhcCCceeccC-CCCCCeEeeeccC-CCCcccccCCCchhhe
Confidence 689999999999 999999999999999999999999999 8888753 3367999999999 9999999999999999
Q ss_pred ccc---cccccc
Q psy15832 1685 QPE---WKSQQH 1693 (2157)
Q Consensus 1685 V~s---~~~qg~ 1693 (2157)
|.+ +..+|+
T Consensus 169 v~~~~vV~adG~ 180 (495)
T 3fw9_A 169 VVDAILIDANGA 180 (495)
T ss_dssp EEEEEEECTTCC
T ss_pred EEEEEEEcCCCC
Confidence 998 678888
No 15
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=98.88 E-value=1.6e-09 Score=122.93 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=79.4
Q ss_pred CCcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCccccccc-CCCcceecccccCCcccccCCCcccccCC
Q psy15832 1605 SSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV-ELDDVTVGLLTKILQYIWRQAGRVAHFDP 1683 (2157)
Q Consensus 1605 rs~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP-EfdgATVGGnIAGTdVEGSSSHRhG~Fd~ 1683 (2157)
+..++||+++||+| +||+++++|+|+|||++++|.+++.++|+.+++.+ ....++|||.++| +++|..+.+||+-.+
T Consensus 99 ~~~~~idl~~~~~v-~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~~~~g~~~~vgvgG~~~~-gg~g~~~~~~G~~~d 176 (500)
T 3tsh_A 99 ETFAVVDLNKMRAV-WVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAG-GGFGMLLRKYGIAAE 176 (500)
T ss_dssp CCEEEEECTTCCCE-EEETTTTEEEEETTSBHHHHHHHHHHHCTTEECCCCSSTTSBHHHHHHT-CCCCTTHHHHCCGGG
T ss_pred CCeEEEECcCCCCE-EECCCCCEEEEccCcCHHHHHHHHHHhCCCcccCCCCCCCceecCcccc-ccCCccccccCChhh
Confidence 45689999999986 99999999999999999999999999998887766 4567899999999 999999999999999
Q ss_pred cccc---cccccc
Q psy15832 1684 AQPE---WKSQQH 1693 (2157)
Q Consensus 1684 TV~s---~~~qg~ 1693 (2157)
+|.+ +..+|+
T Consensus 177 ~v~~~~vV~a~G~ 189 (500)
T 3tsh_A 177 NVIDVKLVDANGK 189 (500)
T ss_dssp GEEEEEEECTTSC
T ss_pred heeeEEEECCCce
Confidence 9999 678888
No 16
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=98.88 E-value=1.9e-09 Score=123.98 Aligned_cols=94 Identities=17% Similarity=0.021 Sum_probs=81.1
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhc-cCCcccccccCCCcceecccccCCcccccCCCcccccCCc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLI-PRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALL-P~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
..++||+++||+| +||+++++|+|||||++++|.+++. ++||.+|+ .....++|||.++| |++|.++.+||+..++
T Consensus 102 ~gvvIdl~~m~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~-G~~~~vgvgG~~~g-Gg~g~~s~~~G~~~D~ 178 (523)
T 2wdx_A 102 VKVIIDMSLLTEI-AYDPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPG-GVCGGVGVGGHICG-GGYGPLSRQFGSVVDY 178 (523)
T ss_dssp CCEEEECTTCCCE-EEETTTTEEEECTTCBHHHHHHHHHHHHSCCCCC-CCCTTCBHHHHHHH-TCCCTTHHHHCCGGGG
T ss_pred CeEEEEcccCCCE-EEcCCCCEEEEcCCCCHHHHHHHHHHhcCeEEcc-CCCCCCeeCccccC-CCCCcccccccChhhe
Confidence 4689999999999 9999999999999999999999998 59998886 44467899999999 9999999999999999
Q ss_pred ccc---cc--ccccEEEEecccc
Q psy15832 1685 QPE---WK--SQQHAIVHLCSLL 1702 (2157)
Q Consensus 1685 V~s---~~--~qg~~~Vh~CS~~ 1702 (2157)
|.+ +. .+|+++...|++.
T Consensus 179 v~~~evV~~d~~G~v~~~~~~~~ 201 (523)
T 2wdx_A 179 LYAVEVVVVNKQGKARVIVATRE 201 (523)
T ss_dssp EEEEEEEEECTTSCEEEEEEESC
T ss_pred EEEEEEEEecCCccEEEEecccc
Confidence 988 34 4588544556653
No 17
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=98.85 E-value=2.9e-09 Score=122.68 Aligned_cols=94 Identities=17% Similarity=0.085 Sum_probs=80.8
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhcc-CCcccccccCCCcceecccccCCcccccCCCcccccCCc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIP-RGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP-~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
..++||+++||+| +||+++++|+|+|||++++|.+++.. +||.+|. .....++|||.++| |++|.++.+||+..++
T Consensus 103 ~gvvIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~-G~~~~vgvgG~~~g-Gg~g~~s~~~G~~~D~ 179 (530)
T 2y3s_A 103 VRVVMDMSRLSAV-GFDEERGAFAVEAGATLGAVYKTLFRVWGVTLPG-GACPDVGAGGHILG-GGYGPLSRMHGSIVDY 179 (530)
T ss_dssp CCEEEECTTCCCE-EEETTTTEEEEETTCBHHHHHHHHHHHHSCCCCC-CSCTTCBHHHHHHT-TCCCTTHHHHCCGGGG
T ss_pred CeEEEEcccCCCE-EEcCCCCEEEEeCCCCHHHHHHHHHhhcCeEEeC-CCCCCCCcCCCcCC-CCCCcccccccchhhh
Confidence 4589999999999 99999999999999999999999985 9998875 44567899999999 9999999999999999
Q ss_pred ccc---cc--ccccEEEEecccc
Q psy15832 1685 QPE---WK--SQQHAIVHLCSLL 1702 (2157)
Q Consensus 1685 V~s---~~--~qg~~~Vh~CS~~ 1702 (2157)
|.+ +. .+|+++.+.|++.
T Consensus 180 v~~~evV~~d~~G~i~~v~~~~~ 202 (530)
T 2y3s_A 180 LHAVEVVVVDASGDARTVIATRE 202 (530)
T ss_dssp EEEEEEEEECTTSCEEEEEEESC
T ss_pred eeeEEEEEecCCCcEEEEecccc
Confidence 988 33 4588544556653
No 18
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=98.85 E-value=2.2e-09 Score=123.28 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=78.6
Q ss_pred CcceeeccCCCceEEEec-----CC--CEEEEcCCCCHHHHHHHhc-cCCccccccc-CCCcceecccccCCcccccCCC
Q psy15832 1606 SMFPVDLEAMDTILSVDE-----EK--KTVKVEPYVTMGQLTRYLI-PRGWTIPVVV-ELDDVTVGLLTKILQYIWRQAG 1676 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~-----EN--MTVtVEPGVTMgDLvEALL-P~GLfpPVVP-EfdgATVGGnIAGTdVEGSSSH 1676 (2157)
..++||+++||+| +||. ++ ++|+|||||++.++.++++ ++||+ |++| +...+||||+|++ ++.|..++
T Consensus 106 ~gvvidl~~m~~i-~i~~~~~~~~~~~~~v~v~aGv~~~~l~~~~l~~~Gl~-~~~~~s~~~~tiGG~va~-ng~G~~~~ 182 (524)
T 2exr_A 106 GGLVVDMSTTAEN-HFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLA-PRSWTDYLGLTVGGTLSN-AGVSGQAF 182 (524)
T ss_dssp TSEEEEGGGGTTS-CEEEEECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEE-CSCCCSCCSSBHHHHHTT-CCCCTTHH
T ss_pred CEEEEECcCCCCc-EEeecccCCCCCceEEEEeCCcCHHHHHHHHHHHcCCC-CCCCCcCCceeecccCCC-CCCccccc
Confidence 3589999999999 8888 66 9999999999999866555 99998 5455 6778999999997 67778899
Q ss_pred cccccCCcccc---ccccccEEEEecccc
Q psy15832 1677 RVAHFDPAQPE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1677 RhG~Fd~TV~s---~~~qg~~~Vh~CS~~ 1702 (2157)
+||.+.++|.+ +..+|+ ++.|+..
T Consensus 183 ~yG~~~d~V~~l~vV~~dG~--v~~~~~~ 209 (524)
T 2exr_A 183 RYGPQTSNVTELDVVTGNGD--VVTCSEI 209 (524)
T ss_dssp HHCCGGGSEEEEEEEETTSC--EEEEESS
T ss_pred ccCcHhhhEEEEEEEecCCe--EEEECCC
Confidence 99999999999 678999 6668764
No 19
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=98.85 E-value=3.3e-09 Score=121.77 Aligned_cols=93 Identities=23% Similarity=0.116 Sum_probs=81.1
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhc-cCCcccccccCCCcceecccccCCcccccCCCcccccCCc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLI-PRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALL-P~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
..++||+++||+| +||+++++|+|||||++++|.+++. ++||.+|..+. ..++|||.++| |++|.++.+||+..++
T Consensus 100 ~gvvIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~G~~-~~vgvgG~~~g-Gg~g~~s~~~G~~~D~ 176 (521)
T 2ipi_A 100 VRAVIDMSQMRQV-FYDSGKRAFAVEPGATLGETYRALYLDWGVTIPAGVC-PQVGVGGHVLG-GGYGPLSRRDGVVADH 176 (521)
T ss_dssp CCEEEECTTCCCE-EEETTTTEEEECTTSBHHHHHHHHHHHHSBCCCCCSC-TTCBHHHHTTT-TCCCTTHHHHCCGGGG
T ss_pred CeEEEecccCCCe-EEeCCCCEEEEeCCcCHHHHHHHHHHhcCceeCCCCC-CCcccCCcccC-CCCCccccccccHhhc
Confidence 4589999999999 9999999999999999999999997 89999987665 46999999999 9999999999999999
Q ss_pred ccc---cccc--ccEEEEeccc
Q psy15832 1685 QPE---WKSQ--QHAIVHLCSL 1701 (2157)
Q Consensus 1685 V~s---~~~q--g~~~Vh~CS~ 1701 (2157)
|.+ +..+ |+++.+.|++
T Consensus 177 v~~~evV~~d~~G~i~~~~~~~ 198 (521)
T 2ipi_A 177 LYAVEVVVVDASGRARKVVATS 198 (521)
T ss_dssp EEEEEEEEECTTSCEEEEEEEC
T ss_pred EEEEEEEEecCCccEEEEeccc
Confidence 988 4444 8855555664
No 20
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=98.80 E-value=4.1e-09 Score=121.11 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=86.2
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhc-cCCcccccccCCCcceecccccCCcccccCCCcccccCCc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLI-PRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALL-P~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
..++||+++||+| +||+++++|+|||||++++|.+++. ++||++|.- ....++|||.++| |++|..+++||+..++
T Consensus 79 ~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~G-~~~~vgvgG~~~g-Gg~G~~~~~~G~~~D~ 155 (501)
T 3pop_A 79 RDLVLDLHNLHAI-GPAADGAGVRVGSGATVDQVQKALFRRWNAALPLG-ACSAVGMGGLVAG-GGYGPLSRQLGLVVDH 155 (501)
T ss_dssp CSEEEECTTCCCE-EECTTSSSEEEETTCBHHHHHHHHHHHHSBCCCCC-SBTTCBHHHHHHH-CCCCTTHHHHCCGGGG
T ss_pred CEEEEEecccCCe-EEcCCCCEEEEECCcCHHHHHHHHHhhcCeEeCCC-CCCCceEeecccc-CCCcccccccccHHHh
Confidence 4589999999997 9999999999999999999999996 689988753 3356889999999 9999999999999999
Q ss_pred ccc---cc--ccccEEEEecccccccccccHHHHHHHHHHhcc
Q psy15832 1685 QPE---WK--SQQHAIVHLCSLLQIPTTLNVAQLQELFMNEMG 1722 (2157)
Q Consensus 1685 V~s---~~--~qg~~~Vh~CS~~~~~~~~~~~~~~~~~~~~~~ 1722 (2157)
|.+ +. .+|++.++.|++. +-.+=.+||.--.|
T Consensus 156 v~~~evV~~da~G~~~~v~~~~~------~~~~~~DLf~a~rG 192 (501)
T 3pop_A 156 LHAVEVAVVDESRTVRLVTARAD------DTGDLGELFWAHTG 192 (501)
T ss_dssp EEEEEEEEECTTSCEEEEEEETT------CCHHHHHHHHHTTT
T ss_pred EEEEEEEEecCCCCEEEEEeccC------CCCCCccHHHHhhc
Confidence 987 33 6888655656431 11223567765444
No 21
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=98.75 E-value=1.2e-08 Score=116.52 Aligned_cols=91 Identities=12% Similarity=-0.024 Sum_probs=79.9
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccC-CcccccccCCCcceecccccCCcccccCCCcccccCCc
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPR-GWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~-GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~T 1684 (2157)
..++||+++||+| +|| ++++|+|||||++++|.+++..+ ||++|. .....++|||.+.| |++|.++++||+..++
T Consensus 88 ~gvvIdl~~l~~i-~~d-~~~~v~v~aG~~~~~l~~~l~~~~gl~~~~-G~~~~vgvgG~~~g-Gg~g~~s~~~G~~~D~ 163 (503)
T 1zr6_A 88 GHLMLELDRMYRV-SVD-DNNVATIQGGARLGYTALELLDQGNRALSH-GTCPAVGVGGHVLG-GGYGFATHTHGLTLDW 163 (503)
T ss_dssp SCEEEECTTCCCE-EEC-TTSCEEEETTCBHHHHHHHHHHTTSEECCC-CSCTTSBHHHHHHH-CCCSTTHHHHCCGGGG
T ss_pred CcEEEECccCCCE-EEC-CCCeEEEecCCCHHHHHHHHHHcCCEEeCC-CCCCcCchhhhhcC-CCCCcccccccChhhe
Confidence 3689999999999 999 99999999999999999999555 588875 43457899999999 9999999999999999
Q ss_pred ccc---ccccccEEEEecccc
Q psy15832 1685 QPE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1685 V~s---~~~qg~~~Vh~CS~~ 1702 (2157)
|.+ +..+|+ ++.|+..
T Consensus 164 v~~~~vV~a~G~--i~~~~~~ 182 (503)
T 1zr6_A 164 LIGATVVLADAS--IVHVSET 182 (503)
T ss_dssp EEEEEEECTTSC--EEEEBTT
T ss_pred EEEEEEEecCCC--EEEeCCC
Confidence 999 678999 7768764
No 22
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=98.74 E-value=7.2e-09 Score=119.98 Aligned_cols=85 Identities=18% Similarity=0.102 Sum_probs=74.8
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCC--cccccccCCCcceecccccCCcccccCCCcccccCC
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRG--WTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDP 1683 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~G--LfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~ 1683 (2157)
..++||+++||+| +||+++++|+||||+++++|.+++.++| |.+|.- ....++|||.++| |++|..++++|+..+
T Consensus 99 ~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G-~~~~vgvgG~~~g-Gg~G~~s~~~G~~~D 175 (518)
T 3vte_A 99 PFVVVDLRNMHSI-KIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGG-YCPTVGVGGHFSG-GGYGALMRNYGLAAD 175 (518)
T ss_dssp SEEEEECTTCCCE-EEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCC-SCTTCBHHHHHHT-CCCCTTHHHHCCGGG
T ss_pred CeEEEECCCCcee-EEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCC-CCCCeeeeeeeCC-CCCccccCCCCchhh
Confidence 4689999999998 9999999999999999999999999975 555432 3357899999999 999999999999999
Q ss_pred cccc---cccccc
Q psy15832 1684 AQPE---WKSQQH 1693 (2157)
Q Consensus 1684 TV~s---~~~qg~ 1693 (2157)
+|.+ +..+|+
T Consensus 176 ~V~~~evV~adG~ 188 (518)
T 3vte_A 176 NIIDAHLVNVDGK 188 (518)
T ss_dssp GEEEEEEECTTCC
T ss_pred eEEEEEEEccCCe
Confidence 9998 668888
No 23
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=98.58 E-value=2.7e-08 Score=104.58 Aligned_cols=77 Identities=9% Similarity=-0.109 Sum_probs=68.2
Q ss_pred EEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCcccc---ccccccEE
Q psy15832 1619 LSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPE---WKSQQHAI 1695 (2157)
Q Consensus 1619 LEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV~s---~~~qg~~~ 1695 (2157)
|+||+++++++|||||++.+|.+++.++||++|+.|+....||||+|++ +++| ++||.. ++|.+ +..+|+
T Consensus 1 l~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl~~~~~Pg~~~~tVGG~v~~-nagG---~~yG~~-D~V~~vevV~~dG~-- 73 (219)
T 2yvs_A 1 MEVHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPGGVGGLVAR-GGFA---QTFFFP-AEVLGLTFRTPKGR-- 73 (219)
T ss_dssp CEEETTTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTTHHHHHHHT-TCSS---BSSCGG-GGEEEEEEECTTSC--
T ss_pred CeEcCCCCEEEEcCCCcHHHHHHHHHHcCCEEeccCCCCCCchhheecc-Cccc---ccCCCc-cEEEEEEEEeCCCC--
Confidence 5899999999999999999999999999999999996333499999998 7787 999999 99999 678999
Q ss_pred EEecccc
Q psy15832 1696 VHLCSLL 1702 (2157)
Q Consensus 1696 Vh~CS~~ 1702 (2157)
++.|+..
T Consensus 74 i~~~~~~ 80 (219)
T 2yvs_A 74 RVRAGGV 80 (219)
T ss_dssp EEEEECS
T ss_pred EEEECCc
Confidence 7768764
No 24
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=98.34 E-value=3.3e-07 Score=100.28 Aligned_cols=81 Identities=9% Similarity=-0.022 Sum_probs=68.5
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCc----ccccccCCCcceecccccCCcccccCCCccc-cc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGW----TIPVVVELDDVTVGLLTKILQYIWRQAGRVA-HF 1681 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GL----fpPVVPEfdgATVGGnIAGTdVEGSSSHRhG-~F 1681 (2157)
.++||+++||+| ++|. .+++|||||++.+|.+++.++|| +++++|+ ||||+++. ...| || .+
T Consensus 93 gvvI~l~~m~~i-~id~--~~v~v~aGv~~~~l~~~l~~~Gl~gLe~~~~~Pg----tvGG~i~~-nagg-----yG~~~ 159 (326)
T 1hsk_A 93 GIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG----SIGGAVYM-NAGA-----YGGEV 159 (326)
T ss_dssp EEEEECTTCCCE-EEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCS----BHHHHHHH-TCEE-----TTEEH
T ss_pred eEEEEeCCCCce-EEcC--CEEEEeCCCcHHHHHHHHHHCCCccccccCCCcc----hhhHHHhc-cccc-----Cchhh
Confidence 578999999999 9984 79999999999999999999999 9999986 89999986 3332 77 88
Q ss_pred CCcccc---ccccccEEEEecccc
Q psy15832 1682 DPAQPE---WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1682 d~TV~s---~~~qg~~~Vh~CS~~ 1702 (2157)
.++|.+ +..+|+ ++.|+.-
T Consensus 160 ~d~v~~v~vv~~~G~--i~~~~~~ 181 (326)
T 1hsk_A 160 KDCIDYALCVNEQGS--LIKLTTK 181 (326)
T ss_dssp HHHEEEEEEECTTSC--EEEEETT
T ss_pred hhhEEEEEEEeCCCC--EEEEChH
Confidence 888887 668888 6656653
No 25
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=97.77 E-value=1.9e-05 Score=87.08 Aligned_cols=80 Identities=5% Similarity=-0.015 Sum_probs=62.8
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCc----ccccccCCCcceecccccC-CcccccCCCccccc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGW----TIPVVVELDDVTVGLLTKI-LQYIWRQAGRVAHF 1681 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GL----fpPVVPEfdgATVGGnIAG-TdVEGSSSHRhG~F 1681 (2157)
.++|++++||+|. +|. .+++|+|||++.+|.+++.++|| +++..| .||||+++. .++.| |.+
T Consensus 99 gvvI~l~~~~~I~-~d~--~~v~v~aG~~~~~l~~~l~~~Gl~Gle~~~giP----gTVGGav~~NaGgyG------g~~ 165 (322)
T 3tx1_A 99 GVILHLDLLQTIE-RNN--TQIVAMSGAKLIDTAKFALNESLSGLEFACGIP----GSIGGALHMNAGAYG------GEI 165 (322)
T ss_dssp EEEEECTTCCCEE-EET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCC----SBHHHHHHHTCEETT------EEH
T ss_pred eEEEECCCCCcEE-ECC--CEEEEecCcCHHHHHHHHHHcCCcccccCCCCc----chhHHHHHhCccCcc------cch
Confidence 5789999999986 774 59999999999999999999999 455555 589999874 12222 788
Q ss_pred CCcccc---ccccccEEEEeccc
Q psy15832 1682 DPAQPE---WKSQQHAIVHLCSL 1701 (2157)
Q Consensus 1682 d~TV~s---~~~qg~~~Vh~CS~ 1701 (2157)
.++|.+ +..+|+ ++.|+.
T Consensus 166 ~d~v~~vevV~~~G~--i~~~~~ 186 (322)
T 3tx1_A 166 SDVLEAATVLTQTGE--LKKLKR 186 (322)
T ss_dssp HHHEEEEEEECTTSC--EEEEEG
T ss_pred HhhEEEEEEEcCCCC--EEEech
Confidence 888887 667898 554543
No 26
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.72 E-value=2.1e-05 Score=63.90 Aligned_cols=36 Identities=31% Similarity=0.757 Sum_probs=33.2
Q ss_pred cccccccccCcCcCCCCCC--CcccccCCCCCCCCCCC
Q psy15832 1861 VQCYQCAKFGHTSKFCHNP--VLCNVCYLPKLDQHTCR 1896 (2157)
Q Consensus 1861 ~QCFNCQRFGHTSayCKsp--PRCVKCGEnHHdSKECp 1896 (2157)
++||+|.+.||.++.|..+ ..|.+||+.+|.+++|+
T Consensus 1 i~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQPRQEGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp CBCTTTCCBSSCTTTCCSCCCSSCTTTCCSSSCTTTSC
T ss_pred CeeeccCCCCcccccCCCCCCCccccCCCCCCccCcCc
Confidence 4799999999999999976 89999999999999996
No 27
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.72 E-value=1.4e-05 Score=64.26 Aligned_cols=35 Identities=40% Similarity=0.890 Sum_probs=33.4
Q ss_pred ccccccccCcCcCCCCCCCcccccCCCCCCCCCCC
Q psy15832 1862 QCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCR 1896 (2157)
Q Consensus 1862 QCFNCQRFGHTSayCKspPRCVKCGEnHHdSKECp 1896 (2157)
+||+|++.||.++.|..+.+|.+|++.+|.+++|+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~~~C~~Cg~~GH~a~~C~ 36 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCR 36 (37)
T ss_dssp CBSSSCCSSCCTTTSSCBTTCSSCCCTTGGGGTTC
T ss_pred cccccCCCCcchhhCcCcCeEccCCCcCCccCcCc
Confidence 69999999999999999999999999999999986
No 28
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=3.1e-05 Score=74.67 Aligned_cols=56 Identities=25% Similarity=0.737 Sum_probs=36.0
Q ss_pred CCcccccccccCcCcCCCCCCCcccccCCC-CCCCCCCCCCCCccccCCCC-CCCCCCCCChh
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHNPVLCNVCYLP-KLDQHTCRAPENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKspPRCVKCGEn-HHdSKECpKnsPPKCANCGG-pHpANSRgCPV 1919 (2157)
.+.+||+|.+.||.++.|.. ..|.+|++. +|.+.+|+. ..+|.+|++ .|.+ +.||.
T Consensus 3 ~~~~C~~C~~~GH~~~~Cp~-~~C~~Cg~~~gH~~~~C~~--~~~C~~Cg~~GH~~--~~C~~ 60 (124)
T 2lli_A 3 AAPKCNNCSQRGHLKKDCPH-IICSYCGATDDHYSRHCPK--AIQCSKCDEVGHYR--SQCPH 60 (124)
T ss_dssp CSSCCSSCSSSSCCTTTTTS-CCCTTTCCTTTCCTTTGGG--SSCSSSSSCSSSST--TTSCC
T ss_pred CCCcccCCCCCCcCcccCcC-CcCcCCCCcCCccCcccCC--cccccccCCCCCcc--ccCcC
Confidence 34567777777777777765 367777776 666677763 356777764 3543 46664
No 29
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.61 E-value=1.7e-05 Score=74.41 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=39.5
Q ss_pred CcccccccccCcCcCCCCCCCcccccCCCCCCCCCCCC-CCCccccCCCC-CCCCCCCCChh
Q psy15832 1860 VVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRA-PENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1860 P~QCFNCQRFGHTSayCKspPRCVKCGEnHHdSKECpK-nsPPKCANCGG-pHpANSRgCPV 1919 (2157)
...|++|..+||.+..|....||.+|++..|.+++|.. .....|-||++ .|. ++.||.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~--~rdC~~ 64 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHF--GDDCKE 64 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSC--GGGCSS
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcC--cccCCc
Confidence 46899999999999999988999999999888888965 24589999995 484 689996
No 30
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=4.5e-05 Score=67.62 Aligned_cols=50 Identities=20% Similarity=0.392 Sum_probs=40.2
Q ss_pred CCCcccccccccCcCcCCCCC---CCcccccCCCCCCCCCCCCCCCccccCCC
Q psy15832 1858 QRVVQCYQCAKFGHTSKFCHN---PVLCNVCYLPKLDQHTCRAPENVRCVNCK 1907 (2157)
Q Consensus 1858 prP~QCFNCQRFGHTSayCKs---pPRCVKCGEnHHdSKECpKnsPPKCANCG 1907 (2157)
.+..+||+|.+.||+++.|.. ..+|.+|++.+|.+++|+......+..|+
T Consensus 5 ~r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~~~~~~~~g 57 (63)
T 2cqf_A 5 SSGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQG 57 (63)
T ss_dssp CSCCCCSSSCCSSSCTTTCCSCCCSSCCTTTCCSSSCTTTCTGGGCSCCCCSC
T ss_pred CCCCcccccCCCCcChhhCCCCCCCCccCCcCCcCCccCcCCCccccCCccCC
Confidence 356789999999999999995 58999999999999999863333444444
No 31
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.55 E-value=3.1e-05 Score=66.33 Aligned_cols=39 Identities=31% Similarity=0.706 Sum_probs=35.6
Q ss_pred CCcccccccccCcCcCCCCCC--CcccccCCCCCCCCCCCC
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHNP--VLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKsp--PRCVKCGEnHHdSKECpK 1897 (2157)
++..||+|++.||++..|..+ ..|.+|++.+|.+++|+.
T Consensus 11 ~~~~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp GTCBCTTTCCBSSCGGGCSSCSCCBCTTTCCBSSCGGGCSS
T ss_pred CCcceeeeCCCCcChhhcCCCCCCEeCCCCCcCCccCCCcC
Confidence 567899999999999999976 789999999999999974
No 32
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.52 E-value=4.8e-05 Score=64.52 Aligned_cols=40 Identities=28% Similarity=0.694 Sum_probs=35.7
Q ss_pred CCCcccccccccCcCcCCCCCC--CcccccCCCCCCCCCCCC
Q psy15832 1858 QRVVQCYQCAKFGHTSKFCHNP--VLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1858 prP~QCFNCQRFGHTSayCKsp--PRCVKCGEnHHdSKECpK 1897 (2157)
.++..||+|.+.||.+..|..+ ..|.+||+.+|.+++|+.
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRAPRRQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCCSSCCSCSSSCCSSCCGGGCCS
T ss_pred CCcCeeeecCCCCcChhhCcCCCCCeeCcCCCcCCccCCCcC
Confidence 3567999999999999999875 689999999999999974
No 33
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.52 E-value=4.4e-05 Score=67.10 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=34.8
Q ss_pred CCcccccccccCcCcCCCCCC-------CcccccCCCCCCCCCCCC
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHNP-------VLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKsp-------PRCVKCGEnHHdSKECpK 1897 (2157)
.+.+||+|.++||+++.|..+ .+|.+|++.+|.+++|+.
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCC
T ss_pred CCCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcC
Confidence 467899999999999999885 569999999999999975
No 34
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00012 Score=70.60 Aligned_cols=57 Identities=28% Similarity=0.715 Sum_probs=49.9
Q ss_pred ccccccccc-CcCcCCCCCCCcccccCCCCCCCCCCCCC-CCccccCCCC-CCCCCCCCChh
Q psy15832 1861 VQCYQCAKF-GHTSKFCHNPVLCNVCYLPKLDQHTCRAP-ENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1861 ~QCFNCQRF-GHTSayCKspPRCVKCGEnHHdSKECpKn-sPPKCANCGG-pHpANSRgCPV 1919 (2157)
..||+|.+. ||.++.|....+|.+|++.+|.+.+|+.. ....|.+|+. .|.+ +.||.
T Consensus 23 ~~C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~~GH~~--~~Cp~ 82 (124)
T 2lli_A 23 IICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSK--ERCPS 82 (124)
T ss_dssp CCCTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTTTSCCCCCCCSSSSSCSSCCCT--TTCCC
T ss_pred CcCcCCCCcCCccCcccCCcccccccCCCCCccccCcCcccCccCCCCCcCCcch--hhCCC
Confidence 489999999 99999999999999999999999999863 2478999995 5864 79996
No 35
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.35 E-value=9.4e-05 Score=67.98 Aligned_cols=40 Identities=25% Similarity=0.600 Sum_probs=35.2
Q ss_pred CCCcccccccccCcCcCCCCC---CCcccccCCCCCCCCCCCC
Q psy15832 1858 QRVVQCYQCAKFGHTSKFCHN---PVLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1858 prP~QCFNCQRFGHTSayCKs---pPRCVKCGEnHHdSKECpK 1897 (2157)
....+||+|.+.||+++.|.. ...|.+|++.+|.+++|+.
T Consensus 22 ~r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 22 SKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp STTSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCGGGCTT
T ss_pred CCCCcccccCCcCcCcccCCCCCCCCccCCcCCcCCccCcCcC
Confidence 356789999999999999985 5799999999999999975
No 36
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.17 E-value=0.00013 Score=63.49 Aligned_cols=36 Identities=36% Similarity=0.799 Sum_probs=15.9
Q ss_pred ccccccccCcCcCCCCCC----------CcccccCCCCCCCCCCCC
Q psy15832 1862 QCYQCAKFGHTSKFCHNP----------VLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1862 QCFNCQRFGHTSayCKsp----------PRCVKCGEnHHdSKECpK 1897 (2157)
.||+|.+.||+++.|... ..|.+|++.+|.+++|+.
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~ 48 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKS 48 (60)
T ss_dssp --------------------------CCCSCSSCSSCSSCSTTCCC
T ss_pred ccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCC
Confidence 699999999999999874 579999999999999975
No 37
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=97.14 E-value=0.00016 Score=72.93 Aligned_cols=38 Identities=26% Similarity=0.612 Sum_probs=34.3
Q ss_pred CcccccccccCcCcCCCCC---CCcccccCCCCCCCCCCCC
Q psy15832 1860 VVQCYQCAKFGHTSKFCHN---PVLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1860 P~QCFNCQRFGHTSayCKs---pPRCVKCGEnHHdSKECpK 1897 (2157)
...||+|.++||+++.|.. ..+|.+|++.+|.+++|+.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPL 137 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCCGGGCTT
T ss_pred CCcccEeCCccchhhhCCCCCCCCcccccCCcCCEeccCcC
Confidence 4679999999999999998 4799999999999999975
No 38
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=96.94 E-value=0.0016 Score=72.48 Aligned_cols=85 Identities=12% Similarity=-0.042 Sum_probs=62.2
Q ss_pred cceeeccCCCceEEEecCC-CEEEEcCCCCHHHHHHHhccCCcccc-cccCCCcceecccccCCcccccCCCcccc-cCC
Q psy15832 1607 MFPVDLEAMDTILSVDEEK-KTVKVEPYVTMGQLTRYLIPRGWTIP-VVVELDDVTVGLLTKILQYIWRQAGRVAH-FDP 1683 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~EN-MTVtVEPGVTMgDLvEALLP~GLfpP-VVPEfdgATVGGnIAGTdVEGSSSHRhG~-Fd~ 1683 (2157)
.++|+++ |+.|..+|.+. .+++|++|+++.+|.+++.++||.-. ...+.+ -||||+++-- ..-||. ..+
T Consensus 58 GvVI~l~-~~~i~~i~~~~~~~v~vgAG~~~~~l~~~~~~~Gl~Gle~~~gIP-GtVGGa~~~N------aGayG~ei~d 129 (340)
T 1uxy_A 58 GTVIINR-IKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIP-GCVGSSPIQN------IGAYGVELQR 129 (340)
T ss_dssp EEEEEEC-CCCEEEEECSSEEEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCC-SBGGGTTTTT------CEETTEEGGG
T ss_pred eEEEEcc-CCCcEEEecCCCeEEEEecCCCHHHHHHHHHHCCCCccccccCCc-cchhHHHHhc------cccchhhHHh
Confidence 5789986 99999999888 89999999999999999999999411 111333 3999998742 222563 777
Q ss_pred cccc---ccc-cccEEEEeccc
Q psy15832 1684 AQPE---WKS-QQHAIVHLCSL 1701 (2157)
Q Consensus 1684 TV~s---~~~-qg~~~Vh~CS~ 1701 (2157)
.|.+ +.. +|+ ++.++.
T Consensus 130 ~v~~v~vv~~~~G~--v~~~~~ 149 (340)
T 1uxy_A 130 VCAYVDSVELATGK--QVRLTA 149 (340)
T ss_dssp TEEEEEEEETTTTE--EEEEET
T ss_pred heeEEEEEECCCCc--EEEEeH
Confidence 7776 553 788 554553
No 39
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=96.68 E-value=0.0016 Score=73.38 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=61.4
Q ss_pred cceeeccCCCceEEEe--cCCCEEEEcCCCCHHHHHHHhccCCcc----cccccCCCcceecccccCCcccccCCCcccc
Q psy15832 1607 MFPVDLEAMDTILSVD--EEKKTVKVEPYVTMGQLTRYLIPRGWT----IPVVVELDDVTVGLLTKILQYIWRQAGRVAH 1680 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID--~ENMTVtVEPGVTMgDLvEALLP~GLf----pPVVPEfdgATVGGnIAGTdVEGSSSHRhG~ 1680 (2157)
.++|+++ |+.| ++| .++.+++|++|+++.+|++++.++||. ++..| .||||+++.- ...||.
T Consensus 74 GvVI~l~-~~~i-~v~~~~~~~~v~v~AG~~~~~l~~~a~~~Gl~GlE~l~gIP----GtVGGav~~N------aGaYG~ 141 (357)
T 3i99_A 74 GMIVVNR-LNGI-EHQQDDDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIP----GCAGSAPIQN------IGAYGV 141 (357)
T ss_dssp EEEEEEC-CCCE-EEEECSSEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCC----SBGGGTTTTT------CEETTE
T ss_pred eEEEEcC-CCce-EEeccCCceEEEEeCCCcHHHHHHHHHHcCCcCccccCCCC----chhHHHHHhc------hhhhhh
Confidence 4788988 9987 665 468899999999999999999999995 44444 3899998863 336886
Q ss_pred -cCCcccc---ccc-cccEEEEecc
Q psy15832 1681 -FDPAQPE---WKS-QQHAIVHLCS 1700 (2157)
Q Consensus 1681 -Fd~TV~s---~~~-qg~~~Vh~CS 1700 (2157)
..+.|.+ +.. +|+ ++.++
T Consensus 142 e~~d~v~~vevv~~~~G~--i~~~~ 164 (357)
T 3i99_A 142 EFKDVCDYVEYLCLETGT--VKRLT 164 (357)
T ss_dssp EGGGTEEEEEEEETTTTE--EEEEE
T ss_pred hHHhhEeEEEEEECCCCc--EEEEe
Confidence 8888887 444 788 44343
No 40
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=96.46 E-value=0.00092 Score=72.56 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=59.2
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccc-cccCCCcceecccccCCcccccCCCccc-ccCCc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIP-VVVELDDVTVGLLTKILQYIWRQAGRVA-HFDPA 1684 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpP-VVPEfdgATVGGnIAGTdVEGSSSHRhG-~Fd~T 1684 (2157)
.++|++++|++| ++|. +|+||+++.+|.+++.++||... .....+ .||||+++-- ...|| ...+.
T Consensus 61 GvVI~l~~~~~I-~vd~-----~v~aG~~~~~l~~~~~~~Gl~Gle~~~giP-GtvGGav~~N------aGayG~e~~d~ 127 (268)
T 2gqt_A 61 RVIRLAGEFQTY-DLKG-----WVGAGTLLPLLVQEAARAGLSGLEGLLGIP-AQVGGAVKMN------AGTRFGEMADA 127 (268)
T ss_dssp EEEEECGGGGCB-CTTS-----EEETTSBHHHHHHHHHHTTEESCGGGTTCC-CBHHHHHHTT------CEETTEEGGGG
T ss_pred eEEEEcCCCCCc-EEcC-----EEECCCCHHHHHHHHHHcCCcCCccccCcc-chhHHHHHhc------cccCchhHHhh
Confidence 589999999988 4763 99999999999999999999411 111333 3999999873 33588 58888
Q ss_pred ccc---ccccccEEEEeccc
Q psy15832 1685 QPE---WKSQQHAIVHLCSL 1701 (2157)
Q Consensus 1685 V~s---~~~qg~~~Vh~CS~ 1701 (2157)
|.+ + .+|+ ++.++.
T Consensus 128 v~~v~vv-~~G~--v~~~~~ 144 (268)
T 2gqt_A 128 LEAVEVF-HDGA--FHVYCP 144 (268)
T ss_dssp EEEEEEE-ETTE--EEEECG
T ss_pred eeEEEEE-CCCc--EEEEch
Confidence 888 6 7888 554553
No 41
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=95.94 E-value=0.0042 Score=57.15 Aligned_cols=49 Identities=24% Similarity=0.515 Sum_probs=32.0
Q ss_pred cCcCcCCCCCC------------CcccccCCCCCCCCCCCCC-CCccccCCCC-CCCCCCCCChh
Q psy15832 1869 FGHTSKFCHNP------------VLCNVCYLPKLDQHTCRAP-ENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1869 FGHTSayCKsp------------PRCVKCGEnHHdSKECpKn-sPPKCANCGG-pHpANSRgCPV 1919 (2157)
-||+++.|..+ .+|.+|++.+|.+.+|+.. ....|.+|+. .|.+ +.||.
T Consensus 2 ~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~a--r~Cp~ 64 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMV--ASCPL 64 (74)
T ss_dssp ----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCG--GGCTT
T ss_pred CccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCCCCCCccCCcCCcCCcc--CcCcC
Confidence 48999999853 5899999999999999852 3679999995 5865 89996
No 42
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=93.66 E-value=0.055 Score=43.97 Aligned_cols=37 Identities=32% Similarity=0.809 Sum_probs=30.4
Q ss_pred CcccccCCCCCCCCCCCCCCCccccCCCC-CCCCCCCCCh
Q psy15832 1880 VLCNVCYLPKLDQHTCRAPENVRCVNCKG-DHKPTEQRCP 1918 (2157)
Q Consensus 1880 PRCVKCGEnHHdSKECpKnsPPKCANCGG-pHpANSRgCP 1918 (2157)
.+|.+|++.+|.+.+|+......|.+|+. .|.+ +.||
T Consensus 1 i~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~~--~~C~ 38 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQPRQEGCWNCGSKEHRF--AQCP 38 (39)
T ss_dssp CBCTTTCCBSSCTTTCCSCCCSSCTTTCCSSSCT--TTSC
T ss_pred CeeeccCCCCcccccCCCCCCCccccCCCCCCcc--CcCc
Confidence 36999999999999998644689999995 5864 7887
No 43
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.26 E-value=0.026 Score=53.06 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=24.0
Q ss_pred CCcccccccccCcCcCCCCCC---CcccccCCCCCCCCCCCC
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHNP---VLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKsp---PRCVKCGEnHHdSKECpK 1897 (2157)
.+.+||+|..-||.++.|..+ ..|.+||+.+|.+++|+.
T Consensus 23 ~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 23 SIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp GGTCCCCBC-------------CCCBCSSSSCBSSCGGGCSS
T ss_pred CcccccccccCCcccccccCCCCCCeecccCCCCcCcccCCc
Confidence 345899999999999999765 799999999999999985
No 44
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=93.20 E-value=0.057 Score=45.85 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=32.1
Q ss_pred CCcccccCCCCCCCCCCCCCCCccccCCCC-CCCCCCCCChh
Q psy15832 1879 PVLCNVCYLPKLDQHTCRAPENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpKnsPPKCANCGG-pHpANSRgCPV 1919 (2157)
..+|.+||+.+|.+.+|+......|.+|+. .|.+ +.||.
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~~--~~C~~ 45 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAPRRQGCWKCGKTGHVM--AKCPE 45 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCSSCCSCSSSCCSSCCG--GGCCS
T ss_pred cCeeeecCCCCcChhhCcCCCCCeeCcCCCcCCcc--CCCcC
Confidence 478999999999999998644568999994 5864 78985
No 45
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=92.06 E-value=0.065 Score=54.20 Aligned_cols=40 Identities=23% Similarity=0.525 Sum_probs=33.1
Q ss_pred CCcccccCCCCCCCCCCCC-CCCccccCCCC-CCCCCCCCChhH
Q psy15832 1879 PVLCNVCYLPKLDQHTCRA-PENVRCVNCKG-DHKPTEQRCPEM 1920 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpK-nsPPKCANCGG-pHpANSRgCPVY 1920 (2157)
..+|.+|++.+|.+++|+. ....+|.+|+. .|. .+.||..
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~--~r~Cp~~ 138 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHM--VASCPLK 138 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCC--GGGCTTT
T ss_pred CCcccEeCCccchhhhCCCCCCCCcccccCCcCCE--eccCcCC
Confidence 4689999999999999986 34689999994 586 5899973
No 46
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.93 E-value=0.15 Score=45.36 Aligned_cols=39 Identities=23% Similarity=0.537 Sum_probs=32.4
Q ss_pred CCcccccCCCCCCCCCCCCC-CCccccCCCC-CCCCCCCCChh
Q psy15832 1879 PVLCNVCYLPKLDQHTCRAP-ENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpKn-sPPKCANCGG-pHpANSRgCPV 1919 (2157)
..+|.+|++.+|.+.+|+.. ....|.+|+. .|.| +.||.
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~a--r~Cp~ 47 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMV--ASCPL 47 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSCCCSSCCTTTCCSSSCT--TTCTG
T ss_pred CCcccccCCCCcChhhCCCCCCCCccCCcCCcCCcc--CcCCC
Confidence 46899999999999999852 4689999995 5864 89997
No 47
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=91.82 E-value=0.082 Score=42.52 Aligned_cols=34 Identities=32% Similarity=0.682 Sum_probs=28.5
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCCC-CCCCCCCCCh
Q psy15832 1881 LCNVCYLPKLDQHTCRAPENVRCVNCKG-DHKPTEQRCP 1918 (2157)
Q Consensus 1881 RCVKCGEnHHdSKECpKnsPPKCANCGG-pHpANSRgCP 1918 (2157)
+|.+|++.+|.+++|+. +..|.+|+. .|.+ +.||
T Consensus 2 ~C~~Cg~~GH~~~~C~~--~~~C~~Cg~~GH~a--~~C~ 36 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA--PKVCFKCKQPGHFS--KQCR 36 (37)
T ss_dssp CBSSSCCSSCCTTTSSC--BTTCSSCCCTTGGG--GTTC
T ss_pred cccccCCCCcchhhCcC--cCeEccCCCcCCcc--CcCc
Confidence 69999999999999984 589999995 4865 5776
No 48
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=91.60 E-value=0.072 Score=45.64 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=32.1
Q ss_pred CCcccccCCCCCCCCCCCCCCCccccCCCC-CCCCCCCCChh
Q psy15832 1879 PVLCNVCYLPKLDQHTCRAPENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpKnsPPKCANCGG-pHpANSRgCPV 1919 (2157)
...|.+|++.+|.+.+|+......|.+|+. .|. .+.||.
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~--~~~C~~ 51 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQ--MKDCTE 51 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSCSCCBCTTTCCBSSC--GGGCSS
T ss_pred CcceeeeCCCCcChhhcCCCCCCEeCCCCCcCCc--cCCCcC
Confidence 478999999999999998644578999994 586 478885
No 49
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=89.99 E-value=0.13 Score=39.98 Aligned_cols=22 Identities=36% Similarity=1.075 Sum_probs=18.6
Q ss_pred CCcccccccccCcCcCCCCCCC
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHNPV 1880 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKspP 1880 (2157)
+...||+|.+.||.+.+|..+.
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSSS
T ss_pred CCCEEEECCccccCHhHCcccc
Confidence 4567999999999999998663
No 50
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=88.40 E-value=0.22 Score=43.78 Aligned_cols=40 Identities=30% Similarity=0.653 Sum_probs=32.1
Q ss_pred CCcccccCCCCCCCCCCCCCC-----CccccCCCC-CCCCCCCCChhH
Q psy15832 1879 PVLCNVCYLPKLDQHTCRAPE-----NVRCVNCKG-DHKPTEQRCPEM 1920 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpKns-----PPKCANCGG-pHpANSRgCPVY 1920 (2157)
+..|.+|++.+|.+.+|+... ..+|.+|+. .|.| +.||..
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~a--r~C~~~ 49 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNA--KQCRKR 49 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCG--GGCCCC
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCc--CCCcCC
Confidence 468999999999999998632 367999995 5864 799974
No 51
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=87.69 E-value=0.21 Score=43.48 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=14.5
Q ss_pred cccccCCCCCCCCCCCCC--------CCccccCCCC-CCCCCCCCChh
Q psy15832 1881 LCNVCYLPKLDQHTCRAP--------ENVRCVNCKG-DHKPTEQRCPE 1919 (2157)
Q Consensus 1881 RCVKCGEnHHdSKECpKn--------sPPKCANCGG-pHpANSRgCPV 1919 (2157)
.|.+|++.+|.+++|+.. ....|.+|+. .|. .+.||.
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~--ar~C~~ 48 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHW--ANECKS 48 (60)
T ss_dssp --------------------------CCCSCSSCSSCSSC--STTCCC
T ss_pred ccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCc--cCcCCC
Confidence 699999999999999863 2578999995 586 479996
No 52
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=86.56 E-value=0.3 Score=37.31 Aligned_cols=19 Identities=32% Similarity=0.864 Sum_probs=15.9
Q ss_pred cccccccccCcCcCCCCCC
Q psy15832 1861 VQCYQCAKFGHTSKFCHNP 1879 (2157)
Q Consensus 1861 ~QCFNCQRFGHTSayCKsp 1879 (2157)
..||+|.+.||.++.|..+
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5699999999999998765
No 53
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=84.39 E-value=0.48 Score=40.04 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.9
Q ss_pred CCcccccccccCcCcCCCCCCC
Q psy15832 1859 RVVQCYQCAKFGHTSKFCHNPV 1880 (2157)
Q Consensus 1859 rP~QCFNCQRFGHTSayCKspP 1880 (2157)
...+||+|.+.||.+..|....
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCeeeECCCCCcchhhCcCCc
Confidence 4679999999999999998764
No 54
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=81.13 E-value=0.72 Score=41.22 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=20.6
Q ss_pred CCCCcccccccccCcCcCCCCCCCc
Q psy15832 1857 IQRVVQCYQCAKFGHTSKFCHNPVL 1881 (2157)
Q Consensus 1857 VprP~QCFNCQRFGHTSayCKspPR 1881 (2157)
...-.+||+|.+.||.+..|....+
T Consensus 20 ~~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 20 QLDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TCCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCCcceeCCCCCcccccCcCCcc
Confidence 3456889999999999999987643
No 55
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.55 E-value=3.2 Score=36.99 Aligned_cols=17 Identities=41% Similarity=0.937 Sum_probs=15.7
Q ss_pred cccccccccCcCcCCCC
Q psy15832 1861 VQCYQCAKFGHTSKFCH 1877 (2157)
Q Consensus 1861 ~QCFNCQRFGHTSayCK 1877 (2157)
-.||+|.+.||..++|.
T Consensus 8 ~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp CCCTTTCCTTSCGGGCS
T ss_pred CccccCCCcCcccccCC
Confidence 46999999999999997
No 56
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=54.26 E-value=3.3 Score=44.90 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=39.1
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHH-hccCCccccc-------ccCCC---cceecccccC
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRY-LIPRGWTIPV-------VVELD---DVTVGLLTKI 1667 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEA-LLP~GLfpPV-------VPEfd---gATVGGnIAG 1667 (2157)
....||++++..+-.|..+...+++.+||++.+|.+. ++..+| |. .-+.+ -.||||+|+.
T Consensus 48 ~~~lIdl~~i~eL~~i~~~~~~l~iGA~~tl~~l~~~~~~~~~~--~~L~~a~~~~a~~qiRN~gTvGGni~~ 118 (287)
T 1ffv_C 48 PEHLIDINRIPELRGIREEGSTVVIGAMTVENDLISSPIVQARL--PLLAEAAKLIADPQVRNRGTIGGDIAH 118 (287)
T ss_dssp CSEEEECTTCGGGCCEEEETTEEEEETTCBHHHHHHCHHHHHHC--HHHHHHGGGSSCTTGGGTCBHHHHHHT
T ss_pred CCEEEECCCChhhcceEecCCEEEEccCCcHHHHhhChHHHHHh--HHHHHHHHHhCCHHHhcceechhhhcc
Confidence 4578999854322233334457999999999999974 555443 32 12222 3799999998
No 57
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=53.09 E-value=6 Score=30.22 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=15.8
Q ss_pred CcccccCCCCCCCCCCCC
Q psy15832 1880 VLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1880 PRCVKCGEnHHdSKECpK 1897 (2157)
..|.+||+.+|.+++|+.
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 579999999999999975
No 58
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=42.93 E-value=51 Score=30.26 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=40.1
Q ss_pred EEEecCCCEEEEc--C-CCCHHHHHHHhccCCcccccccCCCcceecccccCC----cccccCCCcccccCCc
Q psy15832 1619 LSVDEEKKTVKVE--P-YVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKIL----QYIWRQAGRVAHFDPA 1684 (2157)
Q Consensus 1619 LEID~ENMTVtVE--P-GVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGT----dVEGSSSHRhG~Fd~T 1684 (2157)
..+|.....++|+ | .+...+|.+++...||.. .+....+.|.|.--.- ++| +.+|..|+|++-
T Consensus 39 v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~--~~~~~~l~V~G~~~~~~~~~~~~-~h~h~~~~~~~~ 108 (111)
T 2ofg_X 39 ASVTVATGRLTVTYDPKQVSEITIQERIAALGYTL--AEPKSSVTLNGHKHPHSHREEGH-SHSHGAGEFNLK 108 (111)
T ss_dssp EEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCE--ECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_pred EEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCee--eecceeeeccCccCccccccCcc-cccccccccCCc
Confidence 5667777777764 3 367899999999999743 3322446777775511 233 344555699863
No 59
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=41.10 E-value=11 Score=29.27 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.6
Q ss_pred CCcccccCCCCCCCCCCCC
Q psy15832 1879 PVLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpK 1897 (2157)
...|.+||+.+|.+.+|+.
T Consensus 6 ~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCS
T ss_pred CCEEEECCccccCHhHCcc
Confidence 3679999999988888864
No 60
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=37.55 E-value=17 Score=30.75 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.8
Q ss_pred CCcccccCCCCCCCCCCCC
Q psy15832 1879 PVLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpK 1897 (2157)
...|.+|++.+|-+.+|+.
T Consensus 10 ~~~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSS
T ss_pred CCeeeECCCCCcchhhCcC
Confidence 3788999998888888875
No 61
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=34.44 E-value=16 Score=32.79 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.8
Q ss_pred CCcccccCCCCCCCCCCCC
Q psy15832 1879 PVLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpK 1897 (2157)
..+|.+||+.+|-+.+|+.
T Consensus 23 ~~~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTT
T ss_pred CCcceeCCCCCcccccCcC
Confidence 3789999999888888875
No 62
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.28 E-value=18 Score=32.26 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.5
Q ss_pred CCcccccCCCCCCCCCCCC
Q psy15832 1879 PVLCNVCYLPKLDQHTCRA 1897 (2157)
Q Consensus 1879 pPRCVKCGEnHHdSKECpK 1897 (2157)
...|.+||+.+|-.++|+.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSG
T ss_pred CCccccCCCcCcccccCCC
Confidence 3589999999999999974
No 63
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=27.68 E-value=16 Score=39.65 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=39.0
Q ss_pred CcceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHH-hccCCccccccc----CCC------cceecccccC
Q psy15832 1606 SMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRY-LIPRGWTIPVVV----ELD------DVTVGLLTKI 1667 (2157)
Q Consensus 1606 s~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEA-LLP~GLfpPVVP----Efd------gATVGGnIAG 1667 (2157)
....||++++..+-.|..+...+++-++|++.+|.+. ++... +|... .+- -.||||+|+.
T Consensus 48 ~~~lIdl~~i~eL~~I~~~~~~l~IGA~~t~~~l~~~~~~~~~--~p~L~~a~~~ia~~qiRN~gTiGGnl~~ 118 (288)
T 1n62_C 48 PEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAK--LPIIRETSLLIADPQIRYMGTIGGNAAN 118 (288)
T ss_dssp CSEEEECTTCGGGSCEEEETTEEEEETTCBHHHHHHCHHHHHH--CHHHHHHHTTSSCHHHHHHCBHHHHHHS
T ss_pred CCEEEECCCChhhcceEecCCEEEEccCCcHHHHhcChHHHHH--HHHHHHHHHHhCCHHHHccccccchhcc
Confidence 4578999875433334445568999999999999952 33332 23222 122 2599999998
No 64
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=22.45 E-value=26 Score=28.19 Aligned_cols=18 Identities=33% Similarity=0.789 Sum_probs=16.0
Q ss_pred cccccccccCcCcCCCCC
Q psy15832 1861 VQCYQCAKFGHTSKFCHN 1878 (2157)
Q Consensus 1861 ~QCFNCQRFGHTSayCKs 1878 (2157)
+.|-.|--|||....|..
T Consensus 4 pYCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCND 21 (26)
T ss_dssp CEETTTTEESSCGGGCCT
T ss_pred ccchHHHHhCcccccCCc
Confidence 579999999999999964
No 65
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.10 E-value=53 Score=29.40 Aligned_cols=28 Identities=21% Similarity=0.479 Sum_probs=17.6
Q ss_pred CcccccCCCCCCCCCCCCCCCccccCCCC
Q psy15832 1880 VLCNVCYLPKLDQHTCRAPENVRCVNCKG 1908 (2157)
Q Consensus 1880 PRCVKCGEnHHdSKECpKnsPPKCANCGG 1908 (2157)
-+|.+||..- +..+=..--..+|+.||-
T Consensus 4 Y~C~rCg~~f-s~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 4 YRCGKCWKTF-TDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp -CCCCTTTTC-CCCCSCCCSSSCCTTTCC
T ss_pred EEeeccCCCc-cHHHHhhCCCcccCccCc
Confidence 3789999874 233332223689999985
No 66
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.94 E-value=26 Score=34.92 Aligned_cols=28 Identities=43% Similarity=0.746 Sum_probs=22.3
Q ss_pred hhHHHHHHHhcccCcCccCcccccCCCCCcccccCCCcc
Q psy15832 594 KKVNRILRRMGMEGFNKKFPFIDALPATPPQCRENGTGF 632 (2157)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (2157)
+.+.++|+|.|+ .|-..|+.|+.||.-|
T Consensus 50 eHIaksl~r~g~-----------~L~v~p~~C~~CG~~F 77 (105)
T 2gmg_A 50 KVISKIAKREGM-----------VLLIKPAQCRKCGFVF 77 (105)
T ss_dssp HHHHHHHTTTTE-----------EEEECCCBBTTTCCBC
T ss_pred HHHHHHHhcCCc-----------EEEEECcChhhCcCee
Confidence 457788888885 3566899999999998
No 67
>3pqi_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 2.64A {Bacteriophage PHI92}
Probab=20.86 E-value=41 Score=37.07 Aligned_cols=75 Identities=19% Similarity=0.054 Sum_probs=41.5
Q ss_pred cceeeccCCCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCccc
Q psy15832 1607 MFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQP 1686 (2157)
Q Consensus 1607 ~ivIDLSrLNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV~ 1686 (2157)
...|.+...=+|++||++.++|+|+|++....---.. +.+|+....+.+..+|+=+- +.
T Consensus 20 ~~~i~TalPg~VvsvD~~~~tvtVqP~i~~~~~dG~~----i~~p~I~dVPV~~~~gG~~~-----------------i~ 78 (247)
T 3pqi_A 20 VAEVHTSLPVRVIGVDYGSKTVTLESIVKNTRSTEDE----IDYPTFHDVPFMVNGGGTGR-----------------IS 78 (247)
T ss_dssp ----CEEEEEEEEEEETTTTEEEEEESSCCC-----C----CSSCEEEEEEBCCEEETTEE-----------------EC
T ss_pred HHhccccccEEEEEEeCCCCEEEEEECceecccCCce----eccCccccccEEEecCCCEE-----------------EE
Confidence 3457777888999999999999999999873211112 34454444454444332221 22
Q ss_pred c-ccccccEEEEecccc
Q psy15832 1687 E-WKSQQHAIVHLCSLL 1702 (2157)
Q Consensus 1687 s-~~~qg~~~Vh~CS~~ 1702 (2157)
+ +...-+++++-|.+.
T Consensus 79 ~P~k~GD~vlvvFsdRd 95 (247)
T 3pqi_A 79 FPIKAGDIGVVVFSERD 95 (247)
T ss_dssp CCCCTTCEEEEEEC---
T ss_pred cCCCCCCEEEEEEecCC
Confidence 2 455666677767664
No 68
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=20.27 E-value=32 Score=40.12 Aligned_cols=56 Identities=14% Similarity=0.028 Sum_probs=38.5
Q ss_pred CcceeeccC---CCceEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccc----c---CCC---cceecccccC
Q psy15832 1606 SMFPVDLEA---MDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVV----V---ELD---DVTVGLLTKI 1667 (2157)
Q Consensus 1606 s~ivIDLSr---LNRILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVV----P---Efd---gATVGGnIAG 1667 (2157)
....||+++ |+.| +.+ ...+++-+||++.+|.+.+ ..+| |.. - +.+ ..||||+|+.
T Consensus 219 ~~~lIdl~~i~eL~~I-~~~--~~~l~IGA~vtl~~l~~~l-~~~~--p~L~~a~~~ia~~qIRN~gTvGGNl~~ 287 (462)
T 2w3s_A 219 LPEVAFLSHCKDLAQI-RET--PDGYGIGAGVTIAALRAFA-EGPH--PALAGLLRRFASEQVRQVATIGGNIAN 287 (462)
T ss_dssp CCSEEECTTCGGGSCE-EEE--TTEEEEETTCBHHHHHHHH-TTTC--HHHHHHHTTSSCHHHHTTCBHHHHHHH
T ss_pred CCEEEEcCCChhhCcE-EEc--CCEEEEccCCcHHHHHHHH-HHHh--HHHHHHHHHhCChhheeeEEccccccc
Confidence 457899988 5543 444 4469999999999999884 4443 333 1 111 2699999998
Done!