RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15832
(2157 letters)
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain. This family consists
of various enzymes that use FAD as a co-factor, most of
the enzymes are similar to oxygen oxidoreductase. One of
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved
structure, the alignment includes the FAD binding site,
called the PP-loop, between residues 99-110. The FAD
molecule is covalently bound in the known structure,
however the residue that links to the FAD is not in the
alignment. VAO catalyzes the oxidation of a wide variety
of substrates, ranging form aromatic amines to
4-alkylphenols. Other members of this family include
D-lactate dehydrogenase, this enzyme catalyzes the
conversion of D-lactate to pyruvate using FAD as a
co-factor; mitomycin radical oxidase, this enzyme
oxidises the reduced form of mitomycins and is involved
in mitomycin resistance. This family includes MurB an
UDP-N-acetylenolpyruvoylglucosamine reductase enzyme
EC:1.1.1.158. This enzyme is involved in the biosynthesis
of peptidoglycan.
Length = 139
Score = 55.3 bits (134), Expect = 1e-08
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVE-LDDVTVG 1662
+DL ++ IL +D E T VE VT+G L R L +G + + TVG
Sbjct: 48 LDLSRLNGILEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVG 101
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production
and conversion].
Length = 459
Score = 51.4 bits (123), Expect = 3e-06
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDD-VTVG 1662
+DL ++ IL +D E T V+ VT+ L + L P G +PV T+G
Sbjct: 79 LDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIG 132
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 43.3 bits (102), Expect = 0.001
Identities = 82/388 (21%), Positives = 139/388 (35%), Gaps = 33/388 (8%)
Query: 40 NEIESVDDLDESMEINDIDASVETLSEITDKS-SGIDTEKNLVKQIEPEKEEMVDNDKSG 98
IE DL +EI ID E +S +K + + + EK + S
Sbjct: 165 KNIEITKDLKSLIEIKLIDPFDECVSSPHEKMLKTLKKTSSFQLEFHDEKLGETFLNAST 224
Query: 99 NLERTLLESRVEITESNKEDVECN--DSMVQDVRCLKRTRIALSKVGGDAVSKVSSDTLD 156
NL + + E + +T + E E +S VQD C + + + + + D
Sbjct: 225 NLPK-ISEVQAYLTLNFPESFEDEIIESSVQDEECSREANVPTQDIEANTKDSLHMSAQD 283
Query: 157 TVSKVSDENKALSPPEKAVSYPLESKKTPDKSAPSTAQPMSPQNDKKLETDAPKIPEP-- 214
+N L PE++ D + + KL ++ IPE
Sbjct: 284 N----HYDNTQLQTPERSTK---RKSPIWDLKEDQKESKIKSGTNLKLSSEKESIPETSY 336
Query: 215 VSVLEEQSSKISDPSP-VLQLSTGRKFKIGRLKEVSNTTNETAVPRKELADSRNIETSVE 273
V+VLEE+ S + L ST + + LKEV + + S E
Sbjct: 337 VNVLEEEQSPLVRLQKRKLARSTSKTLES--LKEVFE--------DQASSVKNKQAQSEE 386
Query: 274 SSKESPSTPSS--GKEHVELANEKVIVGKEDQSKCDTNTDTNKVQEINGDEVRSDEHVFK 331
+ ESP TP + G H L + +I GK+ +K + N V+ + + + ++ K
Sbjct: 387 NLNESPKTPIAVTGDPH--LKDPTIIAGKKLMNKLTSEKINNPVKVVKVSKYKGNKSEKK 444
Query: 332 VPRSVKVHRNL--LSVDKFNKISGTIMSKPVLKESPSTPSSRKEHVELANEKVIVGKEDQ 389
R + V + V K + + LK P+ K+ + N + I K+
Sbjct: 445 --RDINVLDTIFASPVSKELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVV 502
Query: 390 SKCDTNTDANKVQESNGDEVRSDEHVFK 417
K TN AN +++
Sbjct: 503 -KAKTNNKANLQDVGECSSPPNNKEKND 529
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase.
Length = 573
Score = 38.7 bits (90), Expect = 0.034
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIP 1651
V+L MD +L VD+EKK V V+ + Q+ L P G T+
Sbjct: 143 VNLALMDKVLEVDKEKKRVTVQAGARVQQVVEALRPHGLTLQ 184
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 38.4 bits (89), Expect = 0.039
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 737 QPLVEKEGGVEKSPNRSQRKDEKLNFVSKIMENSLHKEDQIQNKGIVPEQSTS--FPNVH 794
+PL E E G +K+P + D+ + VS E +L K D + + E+ +S P +
Sbjct: 127 KPLSEVENGEDKNPPTDDKSDKASSVVSN--ELNLLKADNSKPLAALQEKRSSSISPAGY 184
Query: 795 VPDKESTSPNKMNNDLSPNKSDDTTSLTSTTSS 827
+ ES+S +K+NN S N + ++L + T +
Sbjct: 185 QLEVESSSSSKINN--SNNNNHSNSNLMTPTPN 215
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases. This model
represents a family of at least two different sugar 1,4
lactone oxidases, both involved in synthesizing ascorbic
acid or a derivative. These include L-gulonolactone
oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone
oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Members are proposed to have the cofactor FAD covalently
bound at a site specified by Prosite motif PS00862;
OX2_COVAL_FAD; 1.
Length = 438
Score = 37.6 bits (87), Expect = 0.079
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 1605 SSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTV 1661
+ F + L+ M+ +L D+EKK + VE + + QL L G+++ + + +V+V
Sbjct: 56 TDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSV 112
>gnl|CDD|171679 PRK12717, flgL, flagellar hook-associated protein FlgL; Provisional.
Length = 523
Score = 34.7 bits (80), Expect = 0.66
Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 40/197 (20%)
Query: 924 ASPTDISNQVSYNNNPEPTLVGNQTFSFYGQKRSSDITAP---------------FEKES 968
AS D++++ S +P G QT SF G ++ F +S
Sbjct: 244 ASGNDVTSEASGGGKFDPGTEGGQTISFRGVDLELNVNLKAGSGADADAALAGHSFTLQS 303
Query: 969 TVFRPPNNFSNTNTVSRPSNNVTSNSDNMVSRPPNNLNTSFVNNSPP-KVNGPLENSVHQ 1027
P+ F+ T + S + + + P N++F ++ K ++
Sbjct: 304 K----PDTFTATRSPGNTSTAQVTGA-TITD--PAAYNSTFPSSGAVLKFTSATAYELYA 356
Query: 1028 ANAT---KPTEKIVLPTLSF------YNTRNSPSYGANKRKCEDPEYVSSDESKKLRTEL 1078
T KP L + + +P+ G D V ++ + + + L
Sbjct: 357 QPVTADSKPISSGTLTGNTATAAGVTFTLSGTPAAG-------DQFSVQAN-THQTQNIL 408
Query: 1079 ETSGTLKSTVNTPKDKD 1095
+T L+ ++TP D D
Sbjct: 409 DTLSQLRKALSTPTDGD 425
>gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein
(UMSBP); Provisional.
Length = 148
Score = 32.9 bits (75), Expect = 0.74
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 1849 REIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNV----CYLPKLDQHTCRAPENVR-- 1902
RE AP CY C + GH S+ C N CY + H R N
Sbjct: 66 RECPEAPPGSGPRSCYNCGQTGHISRECPNRAKGGAARRACYNCGGEGHISRDCPNAGKR 125
Query: 1903 ------CVNC-KGDHKPTEQRCPE 1919
C NC + H + CP+
Sbjct: 126 PGGDKTCYNCGQTGH--LSRDCPD 147
Score = 32.1 bits (73), Expect = 1.3
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 19/74 (25%)
Query: 1863 CYQCAKFGHTSKFCHNPVL------CNVCYLPKLDQHTCR-------APENVRCVNCKG- 1908
CY+C + GH S+ C + C C H R C NC
Sbjct: 30 CYKCGEPGHLSRECPSAPGGRGERSCYNCGKTG---HLSRECPEAPPGSGPRSCYNCGQT 86
Query: 1909 DHKPTEQRCPEMSR 1922
H + CP ++
Sbjct: 87 GH--ISRECPNRAK 98
>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 143
Score = 32.3 bits (74), Expect = 1.2
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 495 IPIPTVHKI----RSNKNILNTKNEKVLANKKDTVPEDVSTNENGQNILNHTVNKASTKN 550
+P+ R+ + K ++ K T+ D S + + ++ H + +
Sbjct: 68 LPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKR----- 122
Query: 551 TILPIVKTDNL 561
LP+V+ L
Sbjct: 123 --LPVVEDGRL 131
>gnl|CDD|176555 cd08616, PI-PLCXD1c, Catalytic domain of
phosphatidylinositol-specific phospholipase C, X domain
containing 1. This subfamily corresponds to the
catalytic domain present in a group of
phosphatidylinositol-specific phospholipase C X domain
containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3
(PI-PLCXD3), which are bacterial
phosphatidylinositol-specific phospholipase C (PI-PLC, EC
4.6.1.13) sequence homologs found in vertebrates. The
typical eukaryotic phosphoinositide-specific
phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain
organization that consists of a PLC catalytic core
domain, and various regulatory domains. The catalytic
core domain is assembled from two highly conserved X- and
Y-regions split by a divergent linker sequence. In
contrast, members in this group contain a single
TIM-barrel type catalytic domain, X domain, and are more
closely related to bacterial PI-PLCs, which participate
in Ca2+-independent PI metabolism, hydrolyzing the
membrane lipid phosphatidylinositol (PI) to produce
phosphorylated myo-inositol and diacylglycerol (DAG).
Although the biological function of eukaryotic PI-PLCXDs
still remains unclear, it may distinct from that of
typical eukaryotic PI-PLCs.
Length = 290
Score = 33.4 bits (77), Expect = 1.3
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 1139 YAMQPND--------KNVFDRKIKAFVKELEDYPLDTL---SKRIIALYDNKQLVDNP 1185
Y M D K++F +K+ +L + L+ L ++I Y + P
Sbjct: 126 YGMTEEDHEKLLKMIKSIFGKKLCPRDPDLLNVTLEYLWEKGYQVIVFYHDPVAKKPP 183
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase. This model
represents L-Galactono-gamma-lactone dehydrogenase (EC
1.3.2.3). This enzyme catalyzes the final step in
ascorbic acid biosynthesis in higher plants. This protein
is homologous to ascorbic acid biosynthesis enzymes of
other species: L-gulono-gamma-lactone oxidase in rat and
L-galactono-gamma-lactone oxidase in yeast. All three
covalently bind the cofactor FAD.
Length = 541
Score = 33.5 bits (76), Expect = 1.6
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKI 1667
V+L MD +L VDEEKK V+V+ + + QL + G T+ + + +G + ++
Sbjct: 108 VNLALMDKVLEVDEEKKRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQV 165
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 33.4 bits (76), Expect = 1.7
Identities = 58/339 (17%), Positives = 104/339 (30%), Gaps = 47/339 (13%)
Query: 728 PIPNITDMTQPLVEKEGGVEKSPNRSQRKDEKL--NFVS---KIMENSLHKEDQIQNKGI 782
P P ++G + + +DE + NF S + M ++ +E + +
Sbjct: 2562 PTPTYNKGVDQHNSRDGDEDVLSIGTASEDESIPGNFFSIDPESMWDTGSEELPVYSDA- 2620
Query: 783 VPEQSTSFPNVHVPDKESTSPNKMNNDLSPNKSDDTTSLTSTTSSGLK-SPSNLLTSNET 841
EQ ++ P + D S S +K P N
Sbjct: 2621 --EQDGLIGGGINDREDRAVPENVEYPALAT-QGDQDGFVSKVGSAMKYKPPN----VTA 2673
Query: 842 PCQSLQSPPSIFPKCIQNRLAKIRSTHNLPIYNITPMSNLAHNTRPGEKTNMNLGVHGLK 901
QS+ P + + ++ +P N + L H + G K
Sbjct: 2674 MAQSIVQPDTQKSSIKKKTDIRLAGYRTMPADNRQKGNGLRHKPKTGRSHTTI------K 2727
Query: 902 SNEMSPPSLNKVDIQDAVKPVQASPTDISNQVSYNNNPEPTLVGNQTFSFYGQKRSSDIT 961
+ E+ P A Q +I QVS P +V + R +
Sbjct: 2728 NVEVYPSPPRWTRTAAA----QKRHGEILGQVS------PPIVTLDNATPVNGIRHEKHS 2777
Query: 962 APFEKESTVFRPPNNFSNTNTVSRPSNNVTSNSDN--------MVSRPPNNLNTSFVNNS 1013
P+++ P+ S ++ PS ++ + + R N S S
Sbjct: 2778 IPYDRLDEHRTDPDALSTPPVIAAPSPSLIYKELSGGIGKNILKMGRKQINSR-SKERMS 2836
Query: 1014 PPKVNGPLENSVHQANATKPTEKIVLPTLSFYNTRNSPS 1052
N P +N N ++ T I++ S T +S S
Sbjct: 2837 SKASNSPRKN-----NISRSTADILVGMAS---TTSSHS 2867
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 32.8 bits (75), Expect = 2.0
Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 28/186 (15%)
Query: 977 FSNTNTVSRPSNNVTSNSDNMVSRPPNNLNTSFVNNSPPKVNGPLENSVHQANATKPTE- 1035
FSN NT +R S+ +P S+V +PP P N + +
Sbjct: 34 FSNANTFTRTRPPSRPISNEEADQPNTLNPQSYVETTPPPFQQPQTEESESENEVQIQQE 93
Query: 1036 --------KIVLPTLSFYNTRNSPSYGANKRKCE----DPEYVSSDESKKLRTELETSGT 1083
KI LP + Y N R P+Y S ++ +E + +
Sbjct: 94 VEQSVDEIKITLP------NQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQS 147
Query: 1084 LKSTVNTPKDKDEPKSYTLIQRSIEHLQSEMSKPDVTPTNQIKTKTVTKKLNLLYYAMQP 1143
+ + + + + S+ S N ++ + T+ QP
Sbjct: 148 PNVPIEG-INSSSEQLRVELAELAAEIYSDASHRVELAKNFMEPQAETEA--------QP 198
Query: 1144 NDKNVF 1149
F
Sbjct: 199 EATTNF 204
>gnl|CDD|227414 COG5082, AIR1, Arginine methyltransferase-interacting protein,
contains RING Zn-finger [Posttranslational modification,
protein turnover, chaperones / Intracellular trafficking
and secretion].
Length = 190
Score = 32.1 bits (73), Expect = 2.2
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 1863 CYQCAKFGHTSKFCHNPVLCNVCY---------LPKLDQHTCRAPENVRCVNCKGDHKPT 1913
CY C+ GH S C P C C P DQ C +C +
Sbjct: 81 CYNCSWDGHRSNHCPKPKKCYNCGETGHLSRDCNPSKDQ-------QKSCFDCNSTRHSS 133
Query: 1914 EQRCPEMSRQKKIK 1927
E CP + + +
Sbjct: 134 E-DCPSIWKHYVLN 146
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 31.6 bits (72), Expect = 3.9
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 41 EIESVDDLDESMEINDIDASVETLSEITDKSSGIDTEKNLVKQIEPEKEEMVDNDKSGNL 100
E+E +++ +E +I E + +K S + E+ L + + E + ++ +L
Sbjct: 53 ELEDLENQVSQLES-EIQEIRERIKRAEEKLSAVKDEREL-RALNIEIQIA--KERINSL 108
Query: 101 ERTLLESRVEITESNKEDVECNDSMVQDVRCL 132
E L E EI + KE + + + + + L
Sbjct: 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNL 140
>gnl|CDD|236683 PRK10410, PRK10410, hypothetical protein; Provisional.
Length = 100
Score = 29.9 bits (68), Expect = 4.2
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 1900 NVRCVNCK-GDHKPTEQRCP----EMSRQKKIKEMM 1930
R C G+ KPT ++CP + ++++K+K++M
Sbjct: 44 QKRLDRCPFGEEKPTCKKCPVHCYKPAKREKMKQVM 79
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein. This family of
trypanosomal proteins resemble vertebrate mucins. The
protein consists of three regions. The N and C terminii
are conserved between all members of the family, whereas
the central region is not well conserved and contains a
large number of threonine residues which can be
glycosylated. Indirect evidence suggested that these
genes might encode the core protein of parasite mucins,
glycoproteins that were proposed to be involved in the
interaction with, and invasion of, mammalian host cells.
This family contains an N-terminal signal peptide.
Length = 143
Score = 30.6 bits (68), Expect = 4.2
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 784 PEQSTSFPNVHVPDKESTSPNKMNNDLSPNKSDDTTSLTSTTSSGLKSPSNLLTSNETPC 843
+T+ +T+ + K+ TT+ T+TT++ ++PS T++E P
Sbjct: 44 QTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTTTSEAPT 103
Query: 844 QSLQSPPS 851
+ PS
Sbjct: 104 TTDTRAPS 111
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family,
translational repressor [Translation, ribosomal structure
and biogenesis].
Length = 777
Score = 31.6 bits (72), Expect = 5.0
Identities = 51/339 (15%), Positives = 94/339 (27%), Gaps = 53/339 (15%)
Query: 785 EQSTSFPNVHVPDKESTSPNKMNNDLSPNKSDDTTSLT-STTSSGLKSPS-----NLLTS 838
S+S + S LSP + + S T+S SPS NL +
Sbjct: 173 PASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSPN 232
Query: 839 NETPCQSLQSPPSIFPKCIQNRLAKIRSTHNLPIYNITPMSNLAHNTRPGEKTNMNLGVH 898
N L P + ++N + S+ + +I N
Sbjct: 233 NLFSTSDLS--PLPDTQSVENNIILNSSSSINELTSIYGSVPSIRN-------------- 276
Query: 899 GLKSNEMSPPSLNKVDIQDAVKPVQASPTDISNQVSYNNNPEPTLVGNQTFSFYGQKRSS 958
L+ + S V + + N T SF +
Sbjct: 277 -LRGLNSALVSFLNV------------SSSSLAFSALNGKEVSPTGSPSTRSF--ARVLP 321
Query: 959 DITAPFEKESTVFRPPNNFSNTNTVSRPSNNVTSNSDNMV--SRPPNNLNTSFVNNSPPK 1016
+ + N + ++ P TS ++ S N N
Sbjct: 322 KSSPNNLLTEILTTGVNPPQSLPSLLNPVFLSTSTGFSLTNLSGYLNPNKNLKKNTLSSL 381
Query: 1017 VNGPLENSVHQANATKPTEKIVLPTLSFYNTRNSPSYGANKRKCEDPEYVSSDESKKLRT 1076
N ++V ++++ T I+ +S +S ++S +KL
Sbjct: 382 SNLGYSSNVPSPSSSESTRNILG-NISPNFKTSSNLT-----------NLNSLLKEKLSN 429
Query: 1077 ELETSGTLKSTVN-TPKDKDEPKSYTLIQRSIEHLQSEM 1114
S T + KD+ S +Q+ ++ S
Sbjct: 430 SSSVSATDILGPSIIVSCKDQHGSRF-LQKLLDSNSSPE 467
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 31.9 bits (71), Expect = 5.1
Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 16/217 (7%)
Query: 638 YNNSTIAKEEVEEMEETDCLVMEMEDDLQDVREPKDADSEVSEQLSSQTTCEDKVPVPDM 697
++ S + + E +E + ++ ED V + S E+ +T E+ +P
Sbjct: 233 HHESEVGDKPAETSKEEETPEVKAEDLQPAVDGSVEHSSSEIEEHQGETEKEEGIPESHA 292
Query: 698 TQPLADKEEVVEKSISLPRKEGEELNQMP----VPIPNITDMTQPLVEKEGGVEKSP--- 750
+++VE S P EE+++ P D+ Q + E GV P
Sbjct: 293 EDLQPAVDDIVEHPSSEPFVAEEEVSETEKEENNPEVLAEDL-QDAADGESGVSDQPAQV 351
Query: 751 --NRSQRKDEKLNFVSK--IMENSLHKEDQI-QNKGIVPEQSTSFPNVHVPDKESTSPNK 805
R +E K + S ++D+I + I + V +KE ++P
Sbjct: 352 VEERESEIEEHQGETEKEEGIPESHAEDDEIASDPSIEHFSAEVGKEVSETEKEESNPEV 411
Query: 806 MNNDLSPNKSDDTTSLTSTTSSGLKSPSNLLTSNETP 842
DL P D S P+ E+P
Sbjct: 412 KAEDLQPAVDGDVAHHESEVG---DKPAETSKEEESP 445
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 31.3 bits (71), Expect = 7.3
Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 2/116 (1%)
Query: 446 VLFVSSGSQDDSHSNGKVKYRPETDKNPKVNDIPTRNNTQSLFKAPYKHIPIPTVHKIRS 505
+L +S ++D + K + N + + N K+ K+ + + +
Sbjct: 352 LLALSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKN--LEEGFETKD 409
Query: 506 NKNILNTKNEKVLANKKDTVPEDVSTNENGQNILNHTVNKASTKNTILPIVKTDNL 561
NKN ++ K ++ +D + + I + I+ T+
Sbjct: 410 NKNKNSSFINKTENILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIA 465
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 31.3 bits (70), Expect = 7.3
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 153 DTLDTVSKVSDENKALSPPEKAVSYPLESKKTPDKSAPSTAQPMSPQNDKKLET----DA 208
DT++ +KV+ +S E A S S+K P+ + P + P + K+E+ +
Sbjct: 154 DTVEPGTKVA----IISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEK 209
Query: 209 PKIPEPVSVLEEQSSKISDPSPV-----LQLSTGRKFKIGRLKEVSNT 251
PK P +QS+K P + ++ RK RLK+ NT
Sbjct: 210 PKAPSSPPP-PKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNT 256
>gnl|CDD|225129 COG2219, PRI2, Eukaryotic-type DNA primase, large subunit [DNA
replication, recombination, and repair].
Length = 363
Score = 30.9 bits (70), Expect = 8.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 850 PSIFPKCIQNRLAKIRSTHNLP 871
P FP CI+N LA ++S NLP
Sbjct: 238 PEAFPPCIKNILAGLKSGENLP 259
>gnl|CDD|218339 pfam04941, LEF-8, Late expression factor 8 (LEF-8). Late expression
factor 8 (LEF-8) is one of the primary components of RNA
polymerase produced by polyhedrosis viruses. LEF-8 shows
homology to the second largest subunit of prokaryotic
DNA-directed RNA polymerase.
Length = 748
Score = 30.9 bits (70), Expect = 9.0
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 1603 YKSSMFPVDLEAMDTILSVDEE------KKTVKV-EPYVTMGQLTRY-------LIPRGW 1648
+K +M P++L+ IL V+ KK VK+ + LT Y ++
Sbjct: 433 FKRNMSPIELKLTKDILFVNHHEGMICIKKKVKINDKVSINALLTPYEYHNSESILRNFK 492
Query: 1649 TIPVVVELDDVTVGLLTKILQYIWR 1673
+ + E DDVT L++K+ QY ++
Sbjct: 493 DVARIEESDDVT-SLMSKLEQYYYK 516
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.9 bits (69), Expect = 9.7
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 5 DKDKISFEDKSDKNSKDKPNSSDYNGKDQVVPSASNEIESVDDLDESMEINDIDASVETL 64
D +K +FED D+ + + G + ES D++D E + E L
Sbjct: 598 DDEKGNFEDLEDEENSSDNEMEESRGSSVTAENE----ESADEVDYETEREENARKKEEL 653
Query: 65 SEITDKSSGIDTEKNLVKQIEPEKEEMVDNDKSGNLERTLL--ESRVEI 111
+ D EK V EK ++ + K E + ESRV I
Sbjct: 654 RGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVI 702
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 30.7 bits (69), Expect = 9.9
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 10/132 (7%)
Query: 3 DGDKDKISFEDKSDKNSKDKPNSSDYNGKDQVVPSASNEIESVDDLDESME---INDIDA 59
D D+ + K K +K+K D + ++E +S D DE E I+D A
Sbjct: 233 GEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSA 292
Query: 60 SVETLSEITDKSSGIDTEKNLVKQIEPEKE-EMVDNDKSGNLER------TLLESRVEIT 112
S E DK S K ++Q E +E E N++ G L + L + +
Sbjct: 293 SGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLD 352
Query: 113 ESNKEDVECNDS 124
+ + + + +D
Sbjct: 353 KDDSDSGDDSDD 364
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.364
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 103,371,282
Number of extensions: 9892308
Number of successful extensions: 6158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6119
Number of HSP's successfully gapped: 93
Length of query: 2157
Length of database: 10,937,602
Length adjustment: 112
Effective length of query: 2045
Effective length of database: 5,969,954
Effective search space: 12208555930
Effective search space used: 12208555930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (29.8 bits)