RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15832
(2157 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.3 bits (210), Expect = 2e-16
Identities = 97/642 (15%), Positives = 198/642 (30%), Gaps = 193/642 (30%)
Query: 451 SGSQDDSHSNGKV--KYRPETDKNPKVNDIPTRNNTQSLF-KAPYKHIPI--PTVHKIRS 505
+G + + + N D+ + +S+ K HI + V
Sbjct: 11 TGEHQ--YQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 506 NKNILNTKNEKVLANKKDTVPEDVSTNEN--GQNILNHTVNKASTKNTILPIVKTDNLMQ 563
L +K E+++ + V E + N I T + + T + I + D L
Sbjct: 67 LFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLYN 121
Query: 564 QNRIIQSYNCNLNLVKPATVQKPPHTIVNSKKVNRILRRM------GMEGFNKKFPFIDA 617
N++ YN V + + ++ LR G+ G K + +D
Sbjct: 122 DNQVFAKYN----------VSRLQP-YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 618 LPATPPQCRENGTGF-------------------------KNYNGYNNSTIA-KEEVEEM 651
+ QC+ + F N+ ++ + K + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 652 EE-----------TDCLVMEMEDDLQDVREPK--DA------------DSEVSEQLSSQT 686
+ +CL+ L +V+ K +A +V++ LS+ T
Sbjct: 231 QAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 687 TCEDKVPVPDMTQPLADKE--EVVEKSI-----SLPRKEGEELNQMPVPIPNITDMTQPL 739
T + + + L E ++ K + LPR E L P + I +
Sbjct: 286 TTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAESI--- 337
Query: 740 VEKEGGVEKSPNRSQR-KDEKLNFVSKIMENSLHKEDQIQNK------GIVPEQSTSFPN 792
++G K + ++ I+E+SL+ + + + + P +
Sbjct: 338 --RDG-----LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------S 384
Query: 793 VHVP---------DKESTSPNKMNNDLSPNKSDDTTSLTSTTSSGLKSPSNLLTSNETPC 843
H+P D + + N L S L+ + P
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLH-KYS-------------------LV--EKQPK 422
Query: 844 QSLQSPPSIFPKCIQNRLAKIRSTHNLPI--YNITPMSNLAHNTRPGEKTNM----NLGV 897
+S S PSI+ + ++ +L + H + YNI + + ++G
Sbjct: 423 ESTISIPSIYLE-LKVKLENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYSHIGH 479
Query: 898 HGLKSNEMSP-----PSL--------NKVDIQDAVKPVQASPTDISNQVS-Y-----NNN 938
H LK+ E + K+ S + Q+ Y +N+
Sbjct: 480 H-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 939 PEPTLVGNQTFSF---YGQK----RSSDIT--APFEKESTVF 971
P+ + N F + + +D+ A ++ +F
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 75.3 bits (184), Expect = 2e-13
Identities = 88/614 (14%), Positives = 174/614 (28%), Gaps = 163/614 (26%)
Query: 954 QKRSSDITAPFEKESTVFRPPNNFSNTNTVSRPSNNVTSNS--DNMVSRPPNNLNTSFV- 1010
Q + DI + FE F + + + + + S D+++ T +
Sbjct: 15 QYQYKDILSVFEDA---FVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 1011 ---NNSPPKVNGPLENSVHQAN--------ATKPTEKIVLPTLSFYNTRNSPSYGANKRK 1059
+ ++ V + N T+ + + T + R+ Y N+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRD-RLYNDNQVF 126
Query: 1060 CEDPEYVSSDES-KKLRTELETSGTLKSTVNTPKDKDEP-----------KSYTLIQ--- 1104
VS + KLR L + + K+ +
Sbjct: 127 --AKYNVSRLQPYLKLRQALL------------ELRPAKNVLIDGVLGSGKT-WVALDVC 171
Query: 1105 RSIEHLQSEMSKPD----VTPTNQIKTKTVTKKLNLLYYAMQPNDKNVFDR--------- 1151
S + +Q +M + N +TV + L L Y + PN + D
Sbjct: 172 LSYK-VQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1152 KIKAFVKEL---EDYP-----LDTL-SKRIIALYD----------NKQLVDNPKAVTNIQ 1192
I+A ++ L + Y L + + + ++ KQ+ D ++
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD---FLSAAT 285
Query: 1193 TKVFCLIIQLNT-TRPEFLPTFMKTLHETLV-LHSETT-----LLSILYALTQLYVGLCR 1245
T L T T E +K L L E LSI+ + GL
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR--DGLAT 343
Query: 1246 WRNDPASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVL----VKVMS---CI 1298
W N D + + SLN+L+ R ++ R + + + +
Sbjct: 344 WDN----WKHVNCDKLTTIIESSLNVLEPAEYR--KMF---DRLSVFPPSAHIPTILLSL 394
Query: 1299 LLNQQTSSQGSFLDDQNVFVK-TKQQLRTKYRYQEQFTLAGLLAEL---MNMLKSKHS-- 1352
+ S D V K K L K + ++ + EL + + H
Sbjct: 395 IWFDVIKS-----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 1353 -------CCSNPWQRNPRSN--------SHH-----QGAESSSFSGC------VQRALVL 1386
+ P HH + F +++ +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 1387 LAKHWRPAPDLYSVVVERNLATLFRS--SLDCGAISVAASCAELMGMIGKAMPRASSLLC 1444
+ W + + + + + ++ + L+ I +P+ L
Sbjct: 510 DSTAWNASGSILNTLQQLK---FYKPYICDNDPKYE------RLVNAILDFLPKIEENLI 560
Query: 1445 IVSLLDILEVGLQH 1458
D+L + L
Sbjct: 561 CSKYTDLLRIALMA 574
Score = 74.1 bits (181), Expect = 5e-13
Identities = 97/648 (14%), Positives = 192/648 (29%), Gaps = 175/648 (27%)
Query: 1141 MQPNDKNVFDRKIKAFVKEL-----EDYPLDTLSKRIIALYDNKQLVDNPKAVTNIQTKV 1195
Q K++ AFV +D P LSK I ++ + AV+
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-----DHIIMSKDAVSGTLRLF 68
Query: 1196 FCLIIQLNTTRPEFLPTFMKTLHETLV--LHSETTLLSILYALTQLYVGLCRWRNDPASV 1253
+ L+ + +F+ ++ ++ L+ + +E P S+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--------------------RQP-SM 107
Query: 1254 MTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTSSQGSFLDD 1313
MT +Y R R N Y V SR + LL +
Sbjct: 108 MTRMYIE---QRDRLYNDNQVFAK-----YNV-SRLQPYLKLRQALLELR--------PA 150
Query: 1314 QNVFV-------KT---KQQLRTKYRYQEQF-------TLA------GLLAELMNML-KS 1349
+NV + KT + Y+ Q + L +L L +L +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 1350 KHSCCSNPWQ-RNPRSNSHHQGAESSSF--SGCVQRALVLL-----AKHWRPAPDLYSVV 1401
+ S N + H AE S + L++L AK W A +L +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKI 268
Query: 1402 VERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLQHAAC 1461
+ L T F+ D +S A + + + ++ LD L
Sbjct: 269 L---LTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 1462 RSPSPLRTS-IGRALTCLTAHNT--------------ERCVAILTSVPWTEAEVNDLVKD 1506
+ +P R S I ++ A E + +L AE +
Sbjct: 324 TT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDR 377
Query: 1507 VA---------AKVIAVKNLDWWKEMLEREGSLPKQVTEYFKDKSVC-----------HD 1546
++ ++++ W ++++ + V S+
Sbjct: 378 LSVFPPSAHIPTILLSL----IWFDVIKSD---VMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 1547 LKVKHVQGQVSYFKDEYQGHELKV-KFKV-REWIKTDQSIPMCTGRAGWKC-----MSLR 1599
+ ++ ++ ++ +EY H V + + + + D P + +
Sbjct: 431 IYLE-LKVKLE---NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNI 484
Query: 1600 EPKYKSSMFP---VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVEL 1656
E + ++F +D ++ + D T+ QL Y P + +
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-------PYICDN 537
Query: 1657 DDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKSQQHAIVHLCSLLQI 1704
D L+ IL ++ + + LL+I
Sbjct: 538 DPKYERLVNAILDFL-PKIEENLICSK-------------YTD-LLRI 570
Score = 73.7 bits (180), Expect = 5e-13
Identities = 101/739 (13%), Positives = 193/739 (26%), Gaps = 282/739 (38%)
Query: 675 DSEVSEQLSSQTTCEDKVP--------------VPDMTQPLADKEEVVEKSISLPRKEGE 720
D E E Q +D + V DM + + KEE+ +
Sbjct: 8 DFETGEH---QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI------------D 52
Query: 721 ELNQMPVPIPNITDMTQPLVEKEGGVEKSPNRSQR-----KDEKLNFVSKIMENSLHKE- 774
+ + + + R ++ V K +E L
Sbjct: 53 HIIMSKDAV---------------------SGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 775 ----DQIQNKGIVPEQSTSFPNVHVPDKESTSPNKMNNDLSPNKSDDTTSLTSTTSSGLK 830
I+ + P T +++ ND
Sbjct: 92 KFLMSPIKTEQRQPSMMT--------RMYIEQRDRLYND--------------------- 122
Query: 831 SPSNLLTSNETPCQSLQSPPSIFPKCIQNRLAKIRSTHNLPIYNITPMSNLAHNTRPGEK 890
+F K +RL + L RP +
Sbjct: 123 -------------------NQVFAKYNVSRLQPYLKLRQA-------LLEL----RPAK- 151
Query: 891 TNMNLGVHGL----KSNEMSPPSLNKVDIQDAVKPVQASPTDISNQVSYNNNPEPTLVGN 946
N+ + G+ K+ + VQ ++ + N + N
Sbjct: 152 ---NVLIDGVLGSGKT------WVALDVCLS--YKVQCKM---DFKIFWLN------LKN 191
Query: 947 QTFSFYGQKRSSDITAPFEKESTVFRPPNNFSNTNTVSRPSNNVTSNSDNMVSRPPNNLN 1006
+ +K P N + S S+N+ ++ + L
Sbjct: 192 -------CNSPETVLEMLQKLLYQIDP-----NWTSRSDHSSNIKLRIHSIQAE----LR 235
Query: 1007 TSFVNNSPPK---VNGPLENSVHQANATKPTE---KIVLPTLSFYNTRNSP---SYGANK 1057
+ V L N V A A KI+L T TR A
Sbjct: 236 RLLKSKPYENCLLV---LLN-VQNAKAWNAFNLSCKILL-T-----TRFKQVTDFLSAAT 285
Query: 1058 RKCEDPEYVSSDESKKLRTELETSGTLKSTVNTPKD---------------------KDE 1096
++S D T E L ++ +D
Sbjct: 286 TT-----HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 1097 P------KSY------TLIQRSIEHLQS-EMSK---------PDVTPTNQIKTKTVTKKL 1134
K T+I+ S+ L+ E K P I T L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA----HIPTIL----L 392
Query: 1135 NLLYYAMQPND----------KNVFDRKIKAFVKELEDYPLD---------TLSKRIIAL 1175
+L+++ + +D ++ +++ K + L+ L + I+
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 1176 YDNKQLVDNPKAVTNIQTKVFC------LIIQLNTTRPEFLPT------FM--KTLHETL 1221
Y+ + D+ + + F L + R F+ K H++
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 1222 VLHSETTLLSILYALTQLYVG-LCRWRNDPA------SVMTFL--YDTIYFHRKRSLNIL 1272
++ ++L+ L L + Y +C NDP +++ FL + + ++L
Sbjct: 513 AWNASGSILNTLQQL-KFYKPYIC--DNDPKYERLVNAILDFLPKIEEN-LICSKYTDLL 568
Query: 1273 D-ALITRWPTVYPVASRCV 1290
AL+ ++ A + V
Sbjct: 569 RIALMAEDEAIFEEAHKQV 587
Score = 63.3 bits (153), Expect = 9e-10
Identities = 86/629 (13%), Positives = 196/629 (31%), Gaps = 206/629 (32%)
Query: 309 NTDTNKVQEINGDEVRSDEHVFKVPRSVK----VHRNLLSVDKFNKISGTIMSKPVLKES 364
+ +T + Q D + E F K + +++LS ++ + I IMSK + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVSGT 64
Query: 365 ----PSTPSSRKEHVELANEKVIVGKED--------QSKCDTNTDANKVQESNGDEVRSD 412
+ S ++E V+ E+V+ + + +++ + ++ D + +D
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 413 EHVFK---VPRS---VKLHRNLLSVDKFNKI-------SG---------------TIMSK 444
VF V R +KL + LL + + SG M
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 445 PVLFVSSGSQDDSHS------------NGKVKYRPETDKNPKVNDIPTRNNTQSLFK-AP 491
+ +++ + + + + R + N K+ + + L K P
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 492 YKH--IPIPTVHKIRSNKNILN-----------TKNEKV---LANKKDTVP--EDVS--- 530
Y++ + + V N N T+ ++V L+ T + S
Sbjct: 243 YENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 531 TNENGQNILNHTVNKASTKNTILP--IVKTDNLMQQNRIIQSYNCNLNLVKPATVQKPPH 588
T + +++L + + LP ++ T+ L+++ +++
Sbjct: 299 TPDEVKSLL---LKYLDCRPQDLPREVLTTNPRR------------LSII-AESIRDGLA 342
Query: 589 TI-----VNSKKVNRILRRMGMEGFNKKFPFIDALPATPPQCRENGTGFKNYNGYNNSTI 643
T VN K+ I+ ++ L P + R+ ++ ++
Sbjct: 343 TWDNWKHVNCDKLTTIIES-----------SLNVL--EPAEYRKM---------FDRLSV 380
Query: 644 AKEEV-----------EEMEETDCLVMEMEDDLQD----VREPKDADSEV-SEQLSSQTT 687
++ ++D VM + + L ++PK++ + S L +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 688 CED----------------KVPVPDMTQPLAD------------KEEVVEKSISLP---- 715
E+ D+ P D E E+
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 716 ---------RKEGEELNQMPVPIPNITDMTQPLVEKEGG--VEKSPNRSQRKDEKLNFVS 764
R + N + + ++ + P + + L+F+
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQ-----LKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 765 KIMENSLHKE--DQIQ------NKGIVPE 785
KI EN + + D ++ ++ I E
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 59.1 bits (142), Expect = 2e-08
Identities = 76/508 (14%), Positives = 151/508 (29%), Gaps = 161/508 (31%)
Query: 63 TLSEITDKSSGIDTEKNLVKQIEPEKEEMVDNDKSGNLERTLLESRVEITESNKE----- 117
L + ++ + L+ QI+P D+ + L +++ + +K
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 118 ----DVECNDSMVQ--DVRC--LKRTRIA--LSKVGGDAVSKVSSDTLDTVSKVSDENKA 167
+V N ++ C L TR + + +S D +
Sbjct: 248 LVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD---------HHSMT 297
Query: 168 LSPPEKAVSYPLESKKTPDKSAPSTAQPMSPQNDKKLETDAPKIPEPVSVLEEQSSKISD 227
L+P E L K L+ +P + +
Sbjct: 298 LTPDE---VKSLLL--------------------KYLDCRPQDLP-------REVLTTN- 326
Query: 228 PSPVLQLSTGRKFKIG-RLKEVSNTTNETAVPRKELAD--SRNIETSVESSKESPSTPSS 284
P +LS I +++ T + + D + IE+S+ + P+
Sbjct: 327 P---RRLSI-----IAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLE-----PAE 370
Query: 285 GKEH-VELANEKVIVGKEDQSKCDTNTDTNKVQEINGDEVRSDEHVFKVPRSVKVHRNLL 343
++ L+ VF P S + LL
Sbjct: 371 YRKMFDRLS------------------------------------VF--PPSAHIPTILL 392
Query: 344 SVDKFNKISGTIM-------SKPVLKESPSTPSSR------KEHVELANE----KVIVGK 386
S+ F+ I +M ++++ P + + V+L NE + IV
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 387 EDQSKCDTNTDANKVQESN------GDEVRSDEHVFKVPRS--VKLHRNLLSVDKFNKIS 438
+ K + D G H+ + + L R + +D F +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGH------HLKNIEHPERMTLFRMVF-LD-FRFLE 504
Query: 439 GTIMSKPVLFVSSGSQDDSHSNGKVKYRPE-TDKNPK----VNDIPT--RNNTQSLFKAP 491
I + +SGS ++ K Y+P D +PK VN I ++L +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 492 YKHIPIPTVHKIRSNKN--ILNTKNEKV 517
Y + + ++ I +++V
Sbjct: 564 YTDL----LRIALMAEDEAIFEEAHKQV 587
Score = 56.8 bits (136), Expect = 9e-08
Identities = 105/716 (14%), Positives = 207/716 (28%), Gaps = 219/716 (30%)
Query: 528 DVSTNENGQNILNHTVNKASTKNTILPIVKTDNLMQQNRIIQSYNCN--LNLVKPATVQK 585
D T E + IL + ++ + +++C ++ K ++
Sbjct: 8 DFETGE-----HQYQYKD------ILSVF-------EDAFVDNFDCKDVQDMPKSILSKE 49
Query: 586 PPHTIVNSK-KVNRILRRMGM--------------EGFNKKFPFIDALPATPPQCRENGT 630
I+ SK V+ LR E + F+ + + R+
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSM 107
Query: 631 GFKNYNGY------NNSTIAKEEVEEMEETDCLVMEMEDDLQDVREPKDADSEVSEQLSS 684
+ Y +N AK V ++ +++ L ++R
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQ----PYLKLRQALLELRP-------------- 149
Query: 685 QTTCEDKVPVPDMT----QPLA----DKEEVVEK--------SISLPRKEGEELNQMPVP 728
V + + +A +V K ++ L +
Sbjct: 150 ----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-- 203
Query: 729 IPNI-TDMTQPLVEKEGGVEKSPNRSQRKDEKLNFVSKIMENSLHKE-----DQIQNKGI 782
+ + + S N R + +++++ ++ +QN
Sbjct: 204 --KLLYQIDPNWTS---RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 783 VPEQSTSFPNVH----VPDKESTSPNKMNND-LSPNKSDDTTSLTSTTSSGLKSPSNLLT 837
+F N+ + T+ K D LS TT L S LT
Sbjct: 259 W----NAF-NLSCKILL-----TTRFKQVTDFLSAAT---------TTHISLDHHSMTLT 299
Query: 838 SNETPCQSLQSPPSIFPKCIQNRLAKIRSTHNLP--IYNITPM--SNLAHNTRPGEKTNM 893
+E S+ K + R LP + P S +A + R G T
Sbjct: 300 PDEVK--------SLLLKYLDCRPQD------LPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 894 N---LGVHGLKS-NEMSPPSLNKVDIQDAVKPVQASPTDISNQVSYNNNPEPTLVGNQTF 949
N + L + E S L + + + P + P L
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-------HIPTILLS----- 393
Query: 950 SFYGQKRSSD---ITAPFEKESTVFRPPNNFSNTNTVS---------RPSNNVTSNSDNM 997
+ SD + K S V + P T+S N + ++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKES----TISIPSIYLELKVKLENEYALHRSI 449
Query: 998 VSRPPNNLNTSFVNN--SPPKVNGPLENSV--HQANATKPTEKIVLPTLSFYNTRNSPSY 1053
V N+ +F ++ PP ++ + + H N + E++ L + F + R
Sbjct: 450 VDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDFR----- 501
Query: 1054 GANKRKCEDPEYVSSDESKKLRTELETSGTLKSTVNTPKD---------KDEPKSYTLIQ 1104
++ +K+R + S +NT + ++PK Y +
Sbjct: 502 -----------FLE----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLV 545
Query: 1105 RSIEH--LQSEMSKPDVTPTNQIKTKTVTKKLNLLYYAMQPNDKNVFDRKIKAFVK 1158
+I + E N I +K +LL A+ D+ +F+ K +
Sbjct: 546 NAILDFLPKIE--------ENLICSKY----TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 50.2 bits (119), Expect = 9e-06
Identities = 53/379 (13%), Positives = 106/379 (27%), Gaps = 120/379 (31%)
Query: 1746 VYQENHVYDRYRVLVQCKRSPDNPTNFISNQKCGMLINEIVTNKTDVVEIRRLNRSKILV 1805
V+++ V + CK D P + +S ++ + I+ +K V RL
Sbjct: 24 VFEDAFVDN-----FDCKDVQDMPKSILSKEEI----DHIIMSKDAVSGTLRL------- 67
Query: 1806 SSCIPGVMWMKMFDDNLLL---ESIDARQFRVKSVQRLNRK-VVSPTREIECAPFIQRVV 1861
W LL E + ++F V+ V R+N K ++SP +
Sbjct: 68 -------FW-------TLLSKQEEM-VQKF-VEEVLRINYKFLMSPIKT----------- 100
Query: 1862 QCYQCAKFGHTSKF--CHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDHKPTEQRCPE 1919
+ Q T + + + + K + R P
Sbjct: 101 EQRQ--PSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQ-------------------PY 137
Query: 1920 MSRQKKIKEMMSMRGLVFQE---------AAQMVPSIRSSYTVRTQNSFAV--LESSENT 1968
+ ++ + E+ + ++ A + SY V+ + F + L
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDFKIFWLNLKNCN 193
Query: 1969 RNDDFP----ALGSKNQVNAVEPIEKFVPPPLPYVSANNVTKKFSKEMNDMNKFTKRRGY 2024
+ L + N + L S + + K + Y
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE----------LRRLLKSKPY 243
Query: 2025 SN------DVKVSNDAKKLKPSQSTLSLRREEDTAMIVPV-----LLLINEFNNFHPDTR 2073
N +V+ + S L R + + + L + PD
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-- 301
Query: 2074 NET----ARGVHNQEKSDL 2088
E + + + DL
Sbjct: 302 -EVKSLLLKYL-DCRPQDL 318
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 76.6 bits (188), Expect = 8e-14
Identities = 90/571 (15%), Positives = 167/571 (29%), Gaps = 216/571 (37%)
Query: 1382 RALVLLAKHWRPAPDL-YSVVVERNL---AT-L---FRSSLDCGAISVAA-----SCAEL 1428
R L L H L + ++V A+ L F L AA + AEL
Sbjct: 7 RPLTL--SH----GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 1429 ----MGMIGKAMPRASSLLCIVSLLDILEVGLQ------------HA-ACRSPSPLRTSI 1471
+G + + + + +L + L HA A + T++
Sbjct: 61 VGKFLGYVSSLVEPSK----VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 1472 GRALTCLTAHNTERCVAILTSVPWTEAEVNDLVKDVA---AKVIAV-----KNLDWWKEM 1523
+ + + T R I+ P+ + + L + V A+++A+ D+++E+
Sbjct: 117 VKTKELIKNYITAR---IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 1524 LEREGSLPKQVTEYFKDKS-VCHDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQ 1582
+ + V + K + +L ++ F QG + EW++
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSEL-IRTTLDAEKVF---TQG------LNILEWLENPS 223
Query: 1583 SIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTI-LSVDEEKKTVKVEPYVTMGQLTR 1641
+ P D + + +I +S P + + QL
Sbjct: 224 NTP-------------------------DKDYLLSIPISC----------PLIGVIQLAH 248
Query: 1642 YLIPR---GWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKS-QQHAIVH 1697
Y++ G+T P EL G + A W+S
Sbjct: 249 YVVTAKLLGFT-P--GELRSYLKGATGHSQGLV------TAVAIAETDSWESFFVSVRKA 299
Query: 1698 LCSLLQI---------PTTLNVAQLQELFMNEMGQEGDPPDKKGGT-----RDTAGKERE 1743
+ L I T+L + L++ + EG P + + ++ +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILED---SLENNEGVP------SPMLSISNLTQEQVQ 350
Query: 1744 TIVYQENHVYDRYRVLVQCKRSPDNPTNFISNQKCGMLINEIVTNKTDVVEIRRLNRSKI 1803
V + N P IS L+N
Sbjct: 351 DYVNKTN------------SHLPAGKQVEIS------LVN-------------------- 372
Query: 1804 LVSSCIPGVMWMKMFDDNLLLESIDARQFRV----KSVQRLN---RKVVSPTREIEC-AP 1855
G A+ V +S+ LN RK +P+ + P
Sbjct: 373 -------G-----------------AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 1856 FIQRVVQCYQCAKFGH-----TSKFCHNPVL 1881
F +R + KF + S F H+ +L
Sbjct: 409 FSERKL------KFSNRFLPVASPF-HSHLL 432
Score = 67.4 bits (164), Expect = 6e-11
Identities = 80/528 (15%), Positives = 141/528 (26%), Gaps = 178/528 (33%)
Query: 1198 LIIQLNTTRPEFL-PT------------FMKTLH---ETLVLHSETTLLSILYALTQLYV 1241
L + + L PT F K L E E T + L ++
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT--TPA-ELVGKFL 65
Query: 1242 GLCRWRNDPASVMTFLYDTI------YFHRK--RSLNI---LDALITRWPTVYPVASRCV 1290
G +P+ V +D + F +I L+ T +
Sbjct: 66 GYVSSLVEPSKVGQ--FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT--TLVKTKE 121
Query: 1291 LVK--VMSCILLNQQTSS-----------------------QGS---FLDDQNVFVKTKQ 1322
L+K + + I+ + QG+ + ++
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--------- 172
Query: 1323 QLRTKYR-YQ---EQF--TLAGLLAELMNMLKSKHSCCSNP-----WQRNPRSNSHHQGA 1371
LR Y+ Y A L+EL+ + W NP +
Sbjct: 173 -LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 1372 ESSSFSGCVQRALVLLAKHWRPAPDLYSVVVER------NLATLFRSSLDCGA-ISVAAS 1424
S S C ++ LA H Y V + L + + + + A +
Sbjct: 232 LSIPIS-CPLIGVIQLA-H-------YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 1425 CA----------------ELMGMIG----KAMPR------------------ASSLLCIV 1446
A ++ IG +A P S +L I
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 1447 SL-LDILEVGLQHAACRSPSPLRTSIGRALTCLTAHNTERCVAILTSVPWTEAEVNDLVK 1505
+L + ++ + P+ + I +L N + + +++ P L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEI--SL-----VNGAKNL-VVSGPP------QSLYG 388
Query: 1506 DVAA--KVIAVKNLDWWK-EMLER--EGS---LPKQVT-----EYFKD--KSVCHDLKVK 1550
K A LD + ER + S LP V + DL
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP--VASPFHSHLLVPASDLINKDLVKN 446
Query: 1551 HVQGQVSYFK----DEYQGHEL-KVKFKVREWIKTDQSIPMCTGRAGW 1593
+V + D + G +L + + E I D + W
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI-VDC---IIRLPVKW 490
Score = 58.9 bits (142), Expect = 2e-08
Identities = 117/704 (16%), Positives = 195/704 (27%), Gaps = 287/704 (40%)
Query: 404 SNGDEVRSDEHVFKVPRSVKLHRNLLSVDKFNKISGTIMSKPVLFVSSGSQDDSHSNGKV 463
S+G S EHV VP + + L ++FNKI
Sbjct: 12 SHG----SLEHVLLVPTASFFIASQLQ-EQFNKI-------------------------- 40
Query: 464 KYRPETDKNPKVNDIPTRNNTQSLFKAPY-KHI-----PIPTVHKIRSNKNILNTKNEKV 517
PE + +D PT L + ++ P + L
Sbjct: 41 --LPEPTEGFAADDEPT--TPAELV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 518 LANKKDTVPEDVSTNENGQNILNHTVNKASTKNTILPIVKTDNLMQQNRIIQSYNCNLNL 577
L G +I H + A+ L L++ +I++Y +
Sbjct: 96 L---------------EGNDI--HAL--AAK----LLQENDTTLVKTKELIKNY-----I 127
Query: 578 VKPATVQKPPHTIVNSKKVNRILRRMGMEGFNKKFP-FIDALPATPPQCRENGTGFKNYN 636
++P NS L R EG + F G G N +
Sbjct: 128 TARIMAKRPFDKKSNSA-----LFRAVGEGNAQLVAIF-------------GGQG--NTD 167
Query: 637 GYNNSTIAKEEVEEMEET--------DCLVMEMEDDLQD-VREPKDADSEVSEQLSSQTT 687
Y EE+ + L+ + L + +R DA+ ++ L+
Sbjct: 168 DY---------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 688 CEDKVPVPDMTQPLADKEEVVEKSISLPRKEGEELNQMPVPIPNITDMTQPLVE-----K 742
E+ PD + L +P+ P I + Q L K
Sbjct: 219 LENPSNTPD----------------------KDYLLSIPISCPLIG-VIQ-LAHYVVTAK 254
Query: 743 EGGVEKSPNRSQRKDEKLNFVSKIMENSLHKEDQIQNKGIVPEQSTSFPNVHVPDKESTS 802
G +P S + + H ++G+V + +
Sbjct: 255 LLGF--TPG---------ELRSYLKGATGH------SQGLVTAVAIA------------- 284
Query: 803 PNKMNNDLSPNKSDDTTSLTSTTSSGLKSPSNLLT-----SNET-PCQSLQSPPSIFPKC 856
++D S + + +L E P SL PPSI
Sbjct: 285 -----------ETDSWESFFVSVRKAIT----VLFFIGVRCYEAYPNTSL--PPSILEDS 327
Query: 857 IQNRLAKIRSTHNLPIYNITPMSNLAHNTRPGEKTNMNLGVHGLKSNEMSPPSLNKVDIQ 916
++N +P +PM L + L + +Q
Sbjct: 328 LEN-------NEGVP----SPM----------------LSISN----------LTQEQVQ 350
Query: 917 DAVKPVQAS-PTDISNQVSYNNNPE-------P-TLVG-NQTF------SFYGQKRSSDI 960
D V + P ++S N + P +L G N T S Q R
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---- 406
Query: 961 TAPFEKESTVFRPPNNFSNTNTVSR--PSNNVTSNSDNMVSRPPNNLNTSFVNNSPPKVN 1018
PF + R FSN R P V+ P ++ + + +N
Sbjct: 407 -IPFSE-----RKL-KFSN-----RFLP-----------VASP---FHSHLLVPASDLIN 440
Query: 1019 GPLENSVHQANATKPTEKIVLPTLSFYNTRNSPSYGANKRKCED 1062
L + NA + I +P Y+T + G++ R
Sbjct: 441 KDLVKNNVSFNA----KDIQIPV---YDTFD----GSDLRVLSG 473
Score = 53.9 bits (129), Expect = 6e-07
Identities = 92/640 (14%), Positives = 160/640 (25%), Gaps = 245/640 (38%)
Query: 1598 LREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELD 1657
L+E F L + D+E T E + ++L G+ V ++
Sbjct: 33 LQE------QFNKILPEPTEGFAADDEPTTP-AE------LVGKFL---GY---VSSLVE 73
Query: 1658 DVTVGLLTKILQYIWRQAGR-----------VAHFDPAQPEWKSQQHAIV----HLCSLL 1702
VG ++L + A + ++ +
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 1703 QIPTT-------LNVAQLQE-----LFMNEMGQEGDPPDKKGGTRDTAGKE-RETIVYQE 1749
+ P +F GQ G D +E R+
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFG---GQ---------GNTDDYFEELRD------ 175
Query: 1750 NHVYDRYRVLVQCKRSPDNPTNFISNQKCGMLINEIVTNKTDVVEIRRLNRSKILVSSCI 1809
+Y Y VLV + I + ++E++ D
Sbjct: 176 --LYQTYHVLVG---------DLI--KFSAETLSELIRTTLDA----------------- 205
Query: 1810 PGVMWMKMFDDNLLLESIDARQFRVKSVQRLNRKVVSPTREIECA-----PFIQRVVQCY 1864
+ + + ++ ++ L +P ++ + P I V+Q
Sbjct: 206 ----------EKVFTQGLNILEW-------LENPSNTPDKDYLLSIPISCPLIG-VIQ-- 245
Query: 1865 QCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVR-----CVNCKGD--------HK 1911
H V + L P +R
Sbjct: 246 ----------LAHYVVTAKL-----LGFT----PGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 1912 PTEQRCPEMSRQKKIKEMMSMRGLVFQEAAQMV---PSIRSSYTVRTQNS----FAV--- 1961
+ + R K ++ G+ EA PSI + ++
Sbjct: 287 DSWESFFVSVR--KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 1962 ----LESSENTRNDDFP-------ALGSKNQVNAVEPIEKFV---PPP-LPYVSANNVTK 2006
++ N N P +L VN + V PP L Y + K
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISL-----VNG--A-KNLVVSGPPQSL-YGLNLTLRK 395
Query: 2007 KFSKEMNDMNK--FTKRRGYSNDVKVSNDAKKLKPSQSTLSLRREEDTAMIVPVLLLINE 2064
+ D ++ F++R KLK S L + P
Sbjct: 396 AKAPSGLDQSRIPFSER--------------KLKFSNRFL--------PVASP------- 426
Query: 2065 FNNFHPDTRNETARGVHNQEKSDLNINNASNAHSSYAFQVESSYNQFDNLGYEMGDNDPM 2124
FH + + DL NN S V Y+ FD G ++
Sbjct: 427 ---FHSHLLVPASDLI----NKDLVKNNVSFNAKDIQIPV---YDTFD--GSDLRVLSGS 474
Query: 2125 IDNNNGTMLV------ENNTSDNA---IDNMYRFG-GVLS 2154
I ++ E T A +D FG G S
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILD----FGPGGAS 510
Score = 52.4 bits (125), Expect = 2e-06
Identities = 106/713 (14%), Positives = 193/713 (27%), Gaps = 287/713 (40%)
Query: 882 AHNTRPGEKTNMNLGVHGLKSNEMS---PPSL--NKVDIQDAVKPVQASPTDISNQVSYN 936
A++TRP + L HG S E P + +Q+ + PT+ +
Sbjct: 3 AYSTRP-----LTLS-HG--SLEHVLLVPTASFFIASQLQEQFNKILPEPTE-----GFA 49
Query: 937 NNPEPT----LVGNQTFSFYGQKRSSDITAPFEKESTVFRPPNNFSNTNTVSRPSNNVTS 992
+ EPT LVG F G + S +
Sbjct: 50 ADDEPTTPAELVG----KFLG-----------------------Y----VSSLVEPSKVG 78
Query: 993 NSDNMVSRPPNNLNTSFVNNSPPKVNGPLENSVH--------QANATKPTEKIVLPTLSF 1044
D +++ ++ N +H + + T K ++ ++
Sbjct: 79 QFDQVLNLCLTEFENCYLEG----------NDIHALAAKLLQENDTTLVKTKELI--KNY 126
Query: 1045 YNTR---NSPSYGANK----RKCEDP---------------EYVSSDESKKLRTEL-ETS 1081
R P + R + +Y +E LR +L +T
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EE---LR-DLYQTY 180
Query: 1082 GTLKSTVNTPKDKDEPKSYTLIQRSIEHLQSEMSKPDVTPTNQIKTKTVTKKLNLLYYAM 1141
L LI+ S E L + +
Sbjct: 181 HVLVGD--------------LIKFSAETLSELIRTTLDAEK---------------VF-- 209
Query: 1142 QPNDKNVFDRKIKAFVKELEDYP----LDT--LSKRIIALYDNKQLVDNPKAVTNIQTKV 1195
+ I +++ + P L + +S +I + QL V
Sbjct: 210 ----TQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVI---QLA---------HYVV 251
Query: 1196 FCLIIQLNTTRPEFLPTFMKTLHETLVLHSETTLLSILYALTQLYVGLCRWRNDPASVMT 1255
++ P +++ + HS+ + ++ A T W + SV
Sbjct: 252 TAKLLGFT-------PGELRSYLKGATGHSQGLVTAVAIAETD------SWESFFVSVRK 298
Query: 1256 FLYDTIYFHRKRSLNILDALI-TRWPTVYPVASRCVLV---------KVMSCIL----LN 1301
+ T+ F I R YP S + V S +L L
Sbjct: 299 AI--TVLFF-----------IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 1302 QQTSSQGSFLDDQNVFVKTKQQ----LRTKYRYQEQFTLAGL---LAELMNMLKSKHSCC 1354
Q+ +++ N + +Q L + ++G L L L+ K
Sbjct: 346 QEQVQ--DYVNKTNSHLPAGKQVEISLVNGAK---NLVVSGPPQSLYGLNLTLR-KAKAP 399
Query: 1355 SNPWQ-RNPRSNSHHQGAESSSFSGCVQRALVLLAKHWR--P--APDLYSVVVERNLATL 1409
S Q R P FS +R L R P +P
Sbjct: 400 SGLDQSRIP-------------FS---ERKLKF---SNRFLPVASP-------------- 426
Query: 1410 FRSSL----------DCGAISVAASCAELMGMIGKAMP----------RASSLLCIVSLL 1449
F S L D +V+ + ++ +P R S ++
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDI------QIPVYDTFDGSDLRVLSGSISERIV 480
Query: 1450 D-ILEVGLQ-HAACRSPS-------PLRTSIGRALTCLTAHNTE-RCVAILTS 1492
D I+ + ++ + + P S L LT N + V ++ +
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGAS---GLGVLTHRNKDGTGVRVIVA 530
Score = 47.0 bits (111), Expect = 9e-05
Identities = 96/625 (15%), Positives = 179/625 (28%), Gaps = 224/625 (35%)
Query: 327 EHVFKVPRSVKVHRNLLSVDKFNKISGTIMSKPVLKESPSTPSSRKEHVELANEKVI--V 384
EHV VP + + L ++FNKI + P+TP EL K + V
Sbjct: 17 EHVLLVPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTP------AELV-GKFLGYV 68
Query: 385 GKEDQSKCDTNTDANKVQESNGDEVRSDEHVFKVPRSVKLHRNLLSVDKFNK--ISGT-I 441
++ V+ S +V + V L + +F + G I
Sbjct: 69 -------------SSLVEPS---KVGQFDQVLN-----------LCLTEFENCYLEGNDI 101
Query: 442 MSKPVLFVSSGSQDDSHSNGKVK------YRPETDKNPKVNDIPTRNNTQS-LFKAPYKH 494
+ + Q++ + K K + P + S LF+A
Sbjct: 102 HA----LAAKLLQENDTTLVKTKELIKNYITARI-----MAKRPFDKKSNSALFRA---- 148
Query: 495 IPIPTVHKIRSNKNILNTKNEKVLA------NKKDTVPEDVSTNENGQNILNHTVNKAST 548
+ N +++A N D E + ++ + ++
Sbjct: 149 ---------------VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA- 192
Query: 549 KNTILPIVKTDNLMQQNRIIQSYNCNLN--LVKPATVQKPPHTIVNSKKVNRILRRMGME 606
T+ +++T + + N+ L P+ P + S ++
Sbjct: 193 -ETLSELIRTT---LDAEKVFTQGLNILEWLENPSN--TPDKDYLLSIPIS--------- 237
Query: 607 GFNKKFPFIDALPATPPQ-------CRENGTGFKNYNGYNNSTIAKEEVEEMEETDC--- 656
P I + Q + G Y T
Sbjct: 238 -----CPLIGVI-----QLAHYVVTAKLLGFTPGELRSYLKGA-----------TGHSQG 276
Query: 657 ----LVMEMEDDLQDVREPKDADSEVSEQL------SSQTTCEDKVPVPDMTQPLADKEE 706
+ + D + + + L + +P P + +
Sbjct: 277 LVTAVAIAETDSWESFFV---SVRKAITVLFFIGVRCYEAYPNTSLP-PSILE------- 325
Query: 707 VVEKSISLPRKEGEELNQMPVPIPNITDMTQPLVEKEGGVEKSPNRSQRKDEKL------ 760
SL EG P P+ +I+++TQ V+ V K+ N +++
Sbjct: 326 -----DSLENNEGV-----PSPMLSISNLTQEQVQDY--VNKT-NSHLPAGKQVEISLVN 372
Query: 761 ---NFV------S-KIMENSLHKE------DQ--I---QNKGIVPEQSTSF-----PNVH 794
N V S + +L K DQ I + K + S F P H
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK---LKFSNRFLPVASP-FH 428
Query: 795 ----VPDKESTSPNKMNNDLSPNKSD------DTTSLTSTTSSGLKSPSNLLTSNETPCQ 844
VP + + + + N++S N D DT S L+ S ++ C
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-----FDGSDLRVLSGSISERIVDC- 482
Query: 845 SLQSPPSIFPKCIQ-NRLAKIRSTH 868
I ++ + ++TH
Sbjct: 483 -------IIRLPVKWETTTQFKATH 500
Score = 45.0 bits (106), Expect = 4e-04
Identities = 75/449 (16%), Positives = 131/449 (29%), Gaps = 160/449 (35%)
Query: 736 TQPLVEKEGGVEKS---PNR-----SQRKDEKLNFVSKIMENSLHKEDQIQNKGIVPEQS 787
T+PL G +E P SQ +++ F I+PE +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQ---FNK-----------------ILPEPT 45
Query: 788 TSFPNVHVPDKESTSPNK--------MNNDLSPNKSDDTTSLTST-----TSSGLKS--- 831
F D E T+P + +++ + P+K + + + L+
Sbjct: 46 EGF----AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 832 ---PSNLLTSNETP--------------CQSLQSPPSIFPKCIQNRLAKIRSTHNLPIYN 874
+ LL N+T + P F K + L + N +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRP---FDKKSNSALFRAVGEGNAQLVA 158
Query: 875 I--------TPMSNLA--HNT-RPGEKTNMNLGVHGLKSNEMSPPSLNKV-----DIQDA 918
I L + T + L + KV +I +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 919 VK-PVQASPTD--ISNQVSYNNNPEPTLVG-NQTFSFYGQKRSSDITAPFEKESTVFRPP 974
++ P D +S +S P L+G Q + +TA + F P
Sbjct: 219 LENPSNTPDKDYLLSIPISC-----P-LIGVIQLAHYV-------VTA----KLLGFTPG 261
Query: 975 NNFSNTNTVSRPSNNVTS---------------NSDNMV-----------------SRPP 1002
S + S + + + + S PP
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 1003 NNLNTSFVNN--SP-P--KVNGP----LENSVHQANATKPTEKIVLPTLSFYNTRNS--- 1050
+ L S NN P P ++ +++ V++ N+ P K V +S N +
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV--EISLVNGAKNLVV 379
Query: 1051 ---PS--YGANK--RKCEDPEYVSSDESK 1072
P YG N RK + P D+S+
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPS--GLDQSR 406
Score = 41.2 bits (96), Expect = 0.004
Identities = 31/170 (18%), Positives = 47/170 (27%), Gaps = 66/170 (38%)
Query: 603 MGMEGFNKKFPFIDALPATPPQCRENGTGFKNYNGYNNSTIAKEEVEEMEETDCLVMEME 662
MGM+ L Y S A++ D +
Sbjct: 1631 MGMD-----------L-------------------YKTSKAAQDVWNRA---DNHFKDTY 1657
Query: 663 D-DLQD-VRE-PKD--------ADSEVSEQLSSQTTCEDKVPVPDMTQPLADKEEVVEKS 711
+ D V P + + E S+ E V T+ + +E+ E S
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM-IFETIVDGKLKTEKIF--KEINEHS 1714
Query: 712 ISLP-RKEGEELNQMPVPIPNITDMTQP---LVE-------KEGGVEKSP 750
S R E L+ T TQP L+E K G+ +
Sbjct: 1715 TSYTFRSEKGLLSA--------TQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO;
HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A*
4fdn_A* 4fdp_A* 4ff6_A*
Length = 481
Score = 62.8 bits (152), Expect = 6e-10
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVG 1662
+D+ ++TI S+D + K V ++ V + QL + +P G +PV+ VTVG
Sbjct: 92 IDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVG 144
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin,
flavoprotein, oxidoreductase; HET: FAD; 1.1A
{Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A*
2vfv_A*
Length = 422
Score = 62.4 bits (151), Expect = 8e-10
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVG 1662
+ L + +++ VD +TV+V V +L R + RG +P + L ++V
Sbjct: 65 LSLAGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLPHISVA 117
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen
channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC;
1.54A {Chromobacterium SP}
Length = 540
Score = 52.5 bits (125), Expect = 1e-06
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 1610 VDLEAMDTILSVDEEK--KTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVG 1662
+D T +S+D V + +TM L L G + D+T+G
Sbjct: 82 LDTTRYLTAMSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLG 136
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD;
HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1
PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A*
3bw7_A* 2qpm_A* 3kjm_A*
Length = 534
Score = 47.4 bits (112), Expect = 5e-05
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 1610 VDLEAMDTI-----LSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
V++ ++ ++V + + V + R + RG + +TVG
Sbjct: 119 VNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGT 178
Query: 1665 T 1665
Sbjct: 179 L 179
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 46.7 bits (111), Expect = 9e-05
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPV 1652
+D+ M+ +L VD + T ++ + +L + L +G ++
Sbjct: 189 IDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGH 231
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding,
exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Length = 124
Score = 42.8 bits (100), Expect = 1e-04
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 1861 VQCYQC-AKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAP-ENVRCVNC-KGDHKPTEQRC 1917
+ C C A H S+ C + C+ C + C + V+C C H ++RC
Sbjct: 23 IICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHS--KERC 80
Query: 1918 PEMSRQ 1923
P + R
Sbjct: 81 PSIWRA 86
Score = 40.5 bits (94), Expect = 8e-04
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 1862 QCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRA-PENVRCVNCKG 1908
+C C++ GH K C + + C+ C D H R P+ ++C C
Sbjct: 6 KCNNCSQRGHLKKDCPHII-CSYCG--ATDDHYSRHCPKAIQCSKCDE 50
Score = 37.1 bits (85), Expect = 0.012
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 1852 ECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAP-ENVRCVNCKGD- 1909
+C P + VQC C H+ + C + + P + C NC G
Sbjct: 57 QC-PHKWKKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKG 115
Query: 1910 HKPTEQRCPE 1919
H + C E
Sbjct: 116 HFGDD--CKE 123
Score = 35.9 bits (82), Expect = 0.028
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 1861 VQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRA-PENVRCVNCKGDHKPTEQRCPE 1919
+QC +C + GH C + C L K +H+ P R D++ + +
Sbjct: 43 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLP 102
Query: 1920 MSRQK 1924
Sbjct: 103 FHTIY 107
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 46.2 bits (110), Expect = 1e-04
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRG 1647
+DL+ M+ I+ +D E VEP VT GQ+ Y+
Sbjct: 107 LDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 45.3 bits (107), Expect = 2e-04
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 1610 VDLE-AMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDD 1658
+D+ M+ +L V+ E VEP VT L YL + +++ D
Sbjct: 121 LDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPD 170
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric
substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A
{Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Length = 459
Score = 44.7 bits (106), Expect = 3e-04
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIP 1651
+DL M++I +D ++ V G L + G
Sbjct: 86 LDLRLMNSI-HIDTAGSRARIGGGVISGDLVKEAAKFGLAAV 126
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein,
retrovirus zinc finger-like domains; NMR {Equine
infectious anemia virus}
Length = 37
Score = 37.2 bits (86), Expect = 0.002
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 1862 QCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRA 1897
CY C K GH S C P +C C P CR+
Sbjct: 2 TCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRS 37
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin
oxidase/dehydrogenase, CKX, structura genomics, protein
structure initiative; HET: MSE FAD; 1.70A {Arabidopsis
thaliana} PDB: 2q4w_A*
Length = 524
Score = 38.9 bits (90), Expect = 0.018
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 7/63 (11%)
Query: 1610 VDLEAMDTI------LSVDEEKKTVKVEPYVTMGQ-LTRYLIPRGWTIPVVVELDDVTVG 1662
VD+ LS + V V L R + G + +TVG
Sbjct: 110 VDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVG 169
Query: 1663 LLT 1665
Sbjct: 170 GTL 172
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD;
1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 38.6 bits (89), Expect = 0.026
Identities = 5/52 (9%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 1612 LEAMDTI-LSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVG 1662
+ ++ I ++ TV ++ + L + +++G
Sbjct: 91 MTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIG 142
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding
domain, BERB berberine-like domain, glucooligosaccharide
oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium
nivale} PDB: 3rj8_A*
Length = 473
Score = 38.5 bits (90), Expect = 0.027
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLI-PRGWTIP 1651
V L+ M ++S +++ VEP +G L L G I
Sbjct: 86 VQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAIS 128
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA
complex; NMR {Homo sapiens}
Length = 74
Score = 34.2 bits (78), Expect = 0.040
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 21/66 (31%)
Query: 1859 RVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNC-KGDHKPTEQRC 1917
+ +CY C H +K C P P+ +C C H C
Sbjct: 23 KGDRCYNCGGLDHHAKECKLP------------------PQPKKCHFCQSISHMVAS--C 62
Query: 1918 PEMSRQ 1923
P ++Q
Sbjct: 63 PLKAQQ 68
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation,
oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Length = 518
Score = 37.7 bits (87), Expect = 0.042
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVV 1653
VDL M +I +D +T VE T+G++ ++ + +
Sbjct: 103 VDLRNMHSI-KIDVHSQTAWVEAGATLGEVYYWINEKNENLSFP 145
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 37.2 bits (86), Expect = 0.057
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVV 1653
+DL ++ + S+D E +T VE T+G+L + +
Sbjct: 95 IDLMNLNRV-SIDLESETAWVESGSTLGELYYAITESSSKLGFT 137
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 63
Score = 33.4 bits (76), Expect = 0.060
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 1858 QRVVQCYQCAKFGHTSKFCHNPVLCNVCY 1886
+CY C H +K C P C+
Sbjct: 5 SSGDRCYNCGGLDHHAKECKLPPQPKKCH 33
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex,
glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55;
2.30A {Nonomuraea SP} PDB: 2wdw_A*
Length = 523
Score = 37.2 bits (86), Expect = 0.069
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLI-PRGWTIP 1651
+D+ + I + D +EP T+ ++ L TIP
Sbjct: 106 IDMSLLTEI-AYDPSMNAFLIEPGNTLSEVYEKLYLGWNVTIP 147
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 36.8 bits (85), Expect = 0.075
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLI-PRGWTIP 1651
+D+ M + D K+ VEP T+G+ R L G TIP
Sbjct: 104 IDMSQMRQV-FYDSGKRAFAVEPGATLGETYRALYLDWGVTIP 145
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin
biosynthesis, covalently bound FAD, oxidoreductase; HET:
FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Length = 501
Score = 36.8 bits (85), Expect = 0.095
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPR-GWTIP 1651
+DL + I + V+V T+ Q+ + L R +P
Sbjct: 83 LDLHNLHAI-GPAADGAGVRVGSGATVDQVQKALFRRWNAALP 124
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase,
putative D-LACT dehydrogenase; HET: FAD; 2.57A
{Rhodopseudomonas palustris}
Length = 476
Score = 36.4 bits (85), Expect = 0.11
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPV 1652
+ L+ MD I +D T+ VE + ++ P+
Sbjct: 100 ISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPL 142
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB:
2y3r_A* 2y08_A* 2y4g_A*
Length = 530
Score = 36.5 bits (84), Expect = 0.12
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLI-PRGWTIP 1651
+D+ + + DEE+ VE T+G + + L G T+P
Sbjct: 107 MDMSRLSAV-GFDEERGAFAVEAGATLGAVYKTLFRVWGVTLP 148
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein,
retrovirus, viral protein; NMR {Mason-pfizer monkey
virus} SCOP: g.40.1.1 PDB: 1dsv_A
Length = 60
Score = 32.2 bits (73), Expect = 0.15
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 14/58 (24%)
Query: 1863 CYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNC-KGDHKPTEQRCPE 1919
C++C K GH +K C + + C C +G H E C
Sbjct: 4 CFKCGKKGHFAKNC-----------HEHAHNNAEPKVPGLCPRCKRGKHWANE--CKS 48
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.20
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 1104 QRSIEHLQSEMSK--PDVTPTNQIKTKTV 1130
+++++ LQ+ + D P IK T+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA-TM 46
Score = 33.0 bits (74), Expect = 0.46
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 12/33 (36%)
Query: 164 ENKALSPPEKAVSYPLESK-K--TPDKSAPSTA 193
E +AL +K L++ K D SAP+ A
Sbjct: 18 EKQAL---KK-----LQASLKLYADD-SAPALA 41
Score = 31.1 bits (69), Expect = 2.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 2035 KKLKPSQSTLSLRREEDTAMIVPVLLLIN 2063
KKL Q++L L +D+A P L I
Sbjct: 23 KKL---QASLKL-YADDSA---PA-LAIK 43
Score = 30.3 bits (67), Expect = 3.6
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 13/37 (35%)
Query: 199 QNDKKLETDAPKIPEPVSVLEEQSSKISDPSPVLQLS 235
Q KKL+ K+ D +P L +
Sbjct: 20 QALKKLQASL-KLYAD------------DSAPALAIK 43
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral
protein; NMR {Human immunodeficiency virus 2} SCOP:
g.40.1.1 PDB: 2di2_A
Length = 29
Score = 30.3 bits (68), Expect = 0.32
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 1858 QRVVQCYQCAKFGHTSKFCHNP 1879
++V++C+ C K GH+++ C P
Sbjct: 4 RKVIRCWNCGKEGHSARQCRAP 25
>2hsj_A Putative platelet activating factor; structr genomics, structural
genomics, PSI-2; HET: MSE; 1.50A {Streptococcus
pneumoniae} SCOP: c.23.10.3
Length = 214
Score = 33.6 bits (77), Expect = 0.46
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 1498 AEVNDLVKDVAAKVIAVKNLDWWKEMLEREGSLPKQVTEYFKD 1540
N +++A+ + V+ + + + ++ G L K EY D
Sbjct: 154 QNWNQAYQELASAYMQVEFVPVFDCLTDQAGQLKK---EYTTD 193
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein,
metal binding protein; NMR {Synthetic}
Length = 39
Score = 30.2 bits (68), Expect = 0.47
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 20/59 (33%)
Query: 1861 VQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDHKPTEQRCPE 1919
+ C+ C K GHT++ CR P C NC G + +CP+
Sbjct: 1 LTCFNCGKPGHTAR-------------------MCRQPRQEGCWNC-GSKEHRFAQCPK 39
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA
recognition, zinc finger, viral protein; NMR {Human
immunodeficiency virus type 2} SCOP: g.40.1.1
Length = 49
Score = 30.3 bits (68), Expect = 0.50
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 1858 QRVVQCYQCAKFGHTSKFCHNP 1879
++V++C+ C K GH+++ C P
Sbjct: 4 RKVIRCWNCGKEGHSARQCRAP 25
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA
complex; NMR {Rous sarcoma virus}
Length = 61
Score = 29.8 bits (67), Expect = 1.1
Identities = 8/30 (26%), Positives = 9/30 (30%), Gaps = 7/30 (23%)
Query: 1863 CYQCAKFGHTSKFCHNP-------VLCNVC 1885
CY C GH C C +C
Sbjct: 7 CYTCGSPGHYQAQCPKKRKSGNSRERCQLC 36
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex,
PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus}
PDB: 3trz_A* 3ts0_A*
Length = 148
Score = 31.5 bits (71), Expect = 1.6
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 1862 QCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDHKPTEQ 1915
+CY C H +K C P C+ + H + C K P+ Q
Sbjct: 99 RCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVAS-----CPL-KAQQGPSSQ 146
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR
{Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB:
1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A*
1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Length = 55
Score = 28.8 bits (64), Expect = 2.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1858 QRVVQCYQCAKFGHTSKFCHNP 1879
++ V+C+ C K GH +K C P
Sbjct: 10 RKTVKCFNCGKEGHIAKNCRAP 31
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor,
immunity, signaling transferase; HET: NAG NDG; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3p11_A*
Length = 621
Score = 32.3 bits (72), Expect = 2.3
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 1846 SPTREIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCY---LPKLDQHTCRAPENVR 1902
P + + C + + V C + + C C+ P TC +
Sbjct: 494 GPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDT 553
Query: 1903 CVNCKGDHKPTEQRC 1917
C C H C
Sbjct: 554 CAQCA--HFRDGPHC 566
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit;
alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP:
c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A*
3dt6_A* 3dt8_A*
Length = 232
Score = 31.6 bits (71), Expect = 2.6
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 1498 AEVNDLVKDVAAKVIAVKNLDWWKEMLEREGSLPKQVTEYFKD 1540
VN+LV+ A LD + +G++ D
Sbjct: 153 RRVNELVRAALAGHPRAHFLDADPGFVHSDGTISH---HDMYD 192
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune
system, transferase; 1.05A {Homo sapiens}
Length = 173
Score = 30.4 bits (68), Expect = 3.6
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1727 PPDKKGGTRDTAGKERETIVYQENHVYDRYRVLVQCKR 1764
PP + DT +++Q++ VY +Y +++
Sbjct: 137 PPPQFDSCVDTRSNPSVFVIFQKDQVYPQY--VIEYTE 172
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 5.1
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 643 IAKEEVEEMEETDCLVMEMEDDLQDVR-EPKDADSEVSEQ-LSSQTTCEDKVPVPDMTQP 700
IA+ + +E + + E+ Q R + DA S+V EQ + D+ +
Sbjct: 74 IAQAD-RLTQEPESIRKWREE--QRKRLQELDAASKVMEQEWREKAK-------KDLEEW 123
Query: 701 LADKEEVVEKSISLPRKEGEELNQ 724
+ E VEK+ R + Q
Sbjct: 124 NQRQSEQVEKNKINNRIADKAFYQ 147
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA
surveillance binds to TRF4P/AIR2P heterodimer; 2.70A
{Saccharomyces cerevisiae}
Length = 83
Score = 28.5 bits (63), Expect = 5.3
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 1861 VQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAP-ENVRCVNC 1906
VQC C H+ + C + + P + C NC
Sbjct: 6 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNC 52
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 28.3 bits (63), Expect = 5.4
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 1882 CNVCYL----PKLDQHT--CRAPENVRCVNCKGD 1909
CN C ++++H CR E + C++C D
Sbjct: 13 CNACGESVKKIQVEKHVSNCRNCECLSCIDCGKD 46
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 30.8 bits (69), Expect = 5.9
Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 5/152 (3%)
Query: 1250 PASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTSSQGS 1309
P +M +Y I+ +R L L+ + V+ K + + + +
Sbjct: 214 PLLLMLGVYLRIFLAARRQLADLEDNWE-----TLNDNLKVIEKADNAAQVKDALTKMRA 268
Query: 1310 FLDDQNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKSKHSCCSNPWQRNPRSNSHHQ 1369
D K + ++ + + G + + + + + +
Sbjct: 269 AALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLK 328
Query: 1370 GAESSSFSGCVQRALVLLAKHWRPAPDLYSVV 1401
++ ++RA L K A L +V
Sbjct: 329 TTRNAYIQKYLERARSTLQKEVHAAKSLAIIV 360
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 30.6 bits (70), Expect = 7.4
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 17/61 (27%)
Query: 1823 LLESIDARQFRVKSVQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCH-NPVL 1881
+L +DA Q + ++P+RE+ A I VV K+
Sbjct: 179 MLSRVDASV---PKPQAI---CLAPSREL--ARQIMDVVTEM--------GKYTEVKTAF 222
Query: 1882 C 1882
Sbjct: 223 G 223
>3p8b_B Transcription antitermination protein NUSG; transcription elongation
factor, RNA polymerase, transferase transcription
complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Length = 152
Score = 29.4 bits (66), Expect = 7.7
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 11/45 (24%)
Query: 1617 TILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTV 1661
++ +DE K V V+ I IPV ++ D V +
Sbjct: 111 KVVKIDESKDEVVVQ-----------FIDAIVPIPVTIKGDYVRL 144
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15,
structural genomics structural genomics consortium, SGC;
HET: 3AB; 2.70A {Homo sapiens}
Length = 277
Score = 29.8 bits (66), Expect = 9.7
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 1710 VAQLQELFMNEMGQEGDPPDKKGGTRDTAG----KERETIVYQENHVYDRYRVLVQCKRS 1765
V ++ ++ D++ + + +V + +Y +LV ++
Sbjct: 215 VIDHPDVKCQTKKKDSKEIDRRRARIKHSEGGDIPPKYFVVTNNQLLRVKY-LLVYSQKP 273
Query: 1766 P 1766
P
Sbjct: 274 P 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.364
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 30,017,815
Number of extensions: 1746566
Number of successful extensions: 2414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2387
Number of HSP's successfully gapped: 74
Length of query: 2157
Length of database: 6,701,793
Length adjustment: 109
Effective length of query: 2048
Effective length of database: 3,658,404
Effective search space: 7492411392
Effective search space used: 7492411392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.3 bits)