BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15834
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91V16|LYRM5_MOUSE LYR motif-containing protein 5 OS=Mus musculus GN=Lyrm5 PE=2 SV=1
Length = 86
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 54/66 (81%)
Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
K L+LG+DYPKG DYF+ RLKN F+KN V+DPEKI ++I GEFV+KE++ALY L+KY
Sbjct: 14 KNLLYLGRDYPKGADYFKRRLKNVFLKNKDVEDPEKIKELIARGEFVMKELEALYFLRKY 73
Query: 163 RTLKQR 168
R +KQR
Sbjct: 74 RAMKQR 79
>sp|B5FXA0|LYRM5_TAEGU LYR motif-containing protein 5 OS=Taeniopygia guttata GN=LYRM5 PE=3
SV=1
Length = 86
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 52/66 (78%)
Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
K L+LG++YPKG DYFR RLK AF+KN DPEKI Q+I GEFV+KE++ALY L+KY
Sbjct: 14 KNLLYLGREYPKGADYFRRRLKAAFLKNKDETDPEKIKQLIARGEFVIKELEALYFLRKY 73
Query: 163 RTLKQR 168
R +K+R
Sbjct: 74 RAMKKR 79
>sp|A3KNJ8|LYM5B_DANRE LYR motif-containing protein 5B OS=Danio rerio GN=lyrm5b PE=3 SV=1
Length = 84
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 52/66 (78%)
Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
K L LG++YPKG DYFR RL+ AF KN ++DP+KI Q+I GEFVVKE++ALY L+KY
Sbjct: 14 KALLFLGREYPKGADYFRERLRAAFAKNKDMRDPDKIKQLISRGEFVVKELEALYYLRKY 73
Query: 163 RTLKQR 168
R LK+R
Sbjct: 74 RALKKR 79
>sp|Q0VCR0|LYRM5_BOVIN LYR motif-containing protein 5 OS=Bos taurus GN=LYRM5 PE=3 SV=1
Length = 88
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 51/60 (85%)
Query: 109 GKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQR 168
G+DYPKG DYF+ RLKN F+KN V+DPEKI ++I+ G+FV+KE++ALY L+KYR +KQR
Sbjct: 20 GRDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIERGKFVMKELEALYFLRKYRAMKQR 79
>sp|Q6IPR1|LYRM5_HUMAN LYR motif-containing protein 5 OS=Homo sapiens GN=LYRM5 PE=2 SV=1
Length = 88
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 50/60 (83%)
Query: 109 GKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQR 168
G+DYPKG DYF+ RLKN F+KN V++PEKI ++I GEFV+KE++ALY L+KYR +KQR
Sbjct: 20 GRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEALYFLRKYRAMKQR 79
>sp|Q503U1|LYM5A_DANRE LYR motif-containing protein 5A OS=Danio rerio GN=lyrm5a PE=3 SV=1
Length = 85
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 52/66 (78%)
Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
K L+LG++YPKG YFR RLK AFMKN V DPEKI ++I G+FV+KE++ALY L+KY
Sbjct: 14 KNLLYLGREYPKGTAYFRERLKTAFMKNKDVTDPEKIQKLIDRGDFVIKELEALYYLRKY 73
Query: 163 RTLKQR 168
R +K+R
Sbjct: 74 RAMKKR 79
>sp|B5XCZ6|LYRM5_SALSA LYR motif-containing protein 5 OS=Salmo salar GN=lyrm5 PE=3 SV=1
Length = 92
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%)
Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
K L LG++YPKG DYF RLK AFMKN V DP++I +++ GEFV+KE++ALY L+KY
Sbjct: 14 KNLLFLGREYPKGADYFGERLKRAFMKNKDVTDPKEIKKLVDRGEFVIKELEALYYLRKY 73
Query: 163 RTLKQR 168
R +K+R
Sbjct: 74 RAMKKR 79
>sp|Q54PT6|LYRM5_DICDI LYR motif-containing protein 5 OS=Dictyostelium discoideum GN=lyrm5
PE=3 SV=1
Length = 157
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKY 162
K ++LG+ G DY R + K F+ NA + D KI++ I+ ++V+KEI+A+ KY
Sbjct: 69 KQLMYLGRVGFLGVDYIRDKAKPQFISNANLTDNNKINECIERTKYVIKEIEAMNRFHKY 128
Query: 163 RTLKQ 167
R LK+
Sbjct: 129 RNLKK 133
>sp|O80299|G1P_BPIF1 Gene 1 protein OS=Enterobacteria phage If1 GN=I PE=3 SV=1
Length = 353
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 28/153 (18%)
Query: 33 KTTAINQFLHNKILNF-----------------IVMTQQGLWVNSFNSCNLPSTACCTIL 75
+ + IN FLH + L + + + + ++ + +P +
Sbjct: 104 RQSVINWFLHARKLGWDIIFLIQDLSIMDKQARVALAEHVVYCRRLDKITIPFIGSIYSV 163
Query: 76 STGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQD 135
TG+ + +G+++Y ++P ++ + + + G+D +D K AF +
Sbjct: 164 ITGSKLPLPKVHVGIVKYGDSPQSMTVERWTYTGRDLYAAYD-----TKQAFSDAYEHSS 218
Query: 136 PEKIDQMIKHGEFVVKEIQALYM------LKKY 162
+ + HG + VK YM LKKY
Sbjct: 219 FSYLTPYLSHGRYAVKRDATFYMRLTRIYLKKY 251
>sp|Q6PBU7|MNF1_DANRE Mitochondrial nucleoid factor 1 OS=Danio rerio GN=mnf1 PE=2 SV=1
Length = 129
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 10/50 (20%)
Query: 103 KVFLHLGKDYPK-----GFD---YFRLRLKNAFMK--NAQVQDPEKIDQM 142
+ FL L +++PK G D + R R+ +AF + N Q+ DPEK DQM
Sbjct: 7 RRFLKLCEEWPKDESKKGRDLGTFLRQRVASAFREGENTQISDPEKCDQM 56
>sp|Q8BWR4|UBP40_MOUSE Ubiquitin carboxyl-terminal hydrolase 40 OS=Mus musculus GN=Usp40
PE=1 SV=2
Length = 1235
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 15 SMSLPDGDYQLGFPMSDMKTTAINQFLHNKIL---------NFIVMTQQGLWVNSFNSCN 65
S+ DG+ P DMK T Q L N L N ++ +QG W NS N N
Sbjct: 691 SVESADGECWTAVPKEDMKKTFREQGLRNGSLILVQDSDSDNNSLLPKQGRWTNSMNELN 750
>sp|P15418|G1P_BPI22 Gene 1 protein OS=Enterobacteria phage I2-2 GN=I PE=3 SV=1
Length = 365
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 50 VMTQQGLWVNSFNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLG 109
+ + ++ + N+P + +G + G+++Y +NP L+ +++ G
Sbjct: 138 ALAEHVVYCRRLDKLNIPIIGGLISVLSGGRLPLPKVHFGIVKYGDNPQSLTVDKWIYTG 197
Query: 110 KDYPKGFDYFRLRLKNAFMKNAQVQDP-EKIDQMIKHGEFVVKEIQALYM 158
D +D K F + ++ P + HG F VK YM
Sbjct: 198 TDLYAAYD-----TKQIFTSDRELSPPFCPVSPYYTHGIFAVKRDAKYYM 242
>sp|Q8CQE8|MQO3_STAES Probable malate:quinone oxidoreductase 3 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=mqo3 PE=3 SV=2
Length = 494
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 127 FMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLK 166
+KN + +PE+ Q + H FV+ ++ K+Y TLK
Sbjct: 97 LVKNGDISNPEEFIQPLPHISFVMGPTNVNFLRKRYETLK 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,369,898
Number of Sequences: 539616
Number of extensions: 2335563
Number of successful extensions: 7117
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7106
Number of HSP's gapped (non-prelim): 21
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)