Query psy15834
Match_columns 175
No_of_seqs 110 out of 233
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 22:34:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3801|consensus 99.7 2.6E-16 5.6E-21 119.5 7.9 67 93-159 4-75 (94)
2 PF13232 Complex1_LYR_1: Compl 99.6 7.4E-15 1.6E-19 99.2 6.8 57 97-153 2-60 (61)
3 PF05347 Complex1_LYR: Complex 99.4 2.7E-13 5.9E-18 89.8 5.9 55 96-150 1-57 (59)
4 PF13233 Complex1_LYR_2: Compl 97.9 4.2E-05 9E-10 55.9 7.1 71 98-171 1-84 (104)
5 KOG3426|consensus 97.4 0.00045 9.7E-09 55.2 5.7 63 95-157 23-92 (124)
6 KOG4620|consensus 96.8 0.0034 7.3E-08 47.0 5.7 52 96-147 9-63 (80)
7 KOG3466|consensus 96.0 0.011 2.5E-07 48.8 4.9 54 94-148 12-68 (157)
8 KOG4100|consensus 93.3 0.22 4.8E-06 40.1 5.5 45 98-147 12-61 (125)
9 PF04716 ETC_C1_NDUFA5: ETC co 81.2 6.3 0.00014 27.4 5.6 50 95-144 4-56 (57)
10 PF15460 SAS4: Something about 63.5 9.6 0.00021 29.4 3.4 37 132-170 58-94 (101)
11 PF04695 Pex14_N: Peroxisomal 53.5 8.3 0.00018 30.2 1.6 25 122-147 24-48 (136)
12 cd07603 BAR_ACAPs The Bin/Amph 36.8 1.6E+02 0.0035 24.6 6.8 72 97-171 20-112 (200)
13 KOG0810|consensus 34.4 2E+02 0.0043 25.9 7.4 82 91-172 118-208 (297)
14 PF00825 Ribonuclease_P: Ribon 32.4 44 0.00095 24.7 2.5 19 115-133 58-76 (111)
15 KOG2468|consensus 31.9 20 0.00042 34.9 0.7 20 76-97 423-442 (510)
16 PF05674 DUF816: Baculovirus p 30.6 1.3E+02 0.0029 25.6 5.3 56 99-154 13-68 (171)
17 COG5185 HEC1 Protein involved 28.6 1.7E+02 0.0037 29.1 6.3 35 65-99 170-207 (622)
18 TIGR03183 DNA_S_dndC putative 28.2 38 0.00082 32.0 1.9 82 26-108 182-292 (447)
19 cd03199 GST_C_GRX2 GST_C famil 28.1 80 0.0017 25.2 3.5 60 94-156 7-68 (128)
20 PF05168 HEPN: HEPN domain; I 27.3 1.8E+02 0.0038 20.1 4.8 21 135-155 97-117 (118)
21 COG2461 Uncharacterized conser 27.3 1.2E+02 0.0025 29.1 4.8 66 95-160 115-199 (409)
22 PRK01903 rnpA ribonuclease P; 27.0 48 0.0011 26.2 2.0 26 108-133 56-84 (133)
23 PF03214 RGP: Reversibly glyco 27.0 21 0.00046 33.2 0.0 29 19-60 141-169 (348)
24 cd00179 SynN Syntaxin N-termin 26.9 1.5E+02 0.0032 22.2 4.6 53 95-147 87-143 (151)
25 PLN03180 reversibly glycosylat 26.0 25 0.00054 32.7 0.3 28 19-59 143-170 (346)
26 TIGR00188 rnpA ribonuclease P 24.5 62 0.0013 24.0 2.1 19 115-133 56-74 (105)
27 COG5118 BDP1 Transcription ini 23.3 1.1E+02 0.0023 29.7 3.8 59 88-147 363-425 (507)
28 PF00432 Prenyltrans: Prenyltr 23.3 49 0.0011 20.7 1.2 31 43-75 4-35 (44)
29 PF02877 PARP_reg: Poly(ADP-ri 23.3 1.3E+02 0.0029 23.3 3.8 34 140-173 42-79 (133)
30 PF13801 Metal_resist: Heavy-m 23.2 2.2E+02 0.0048 19.6 4.6 25 131-155 81-105 (125)
31 PF09164 VitD-bind_III: Vitami 23.0 2E+02 0.0043 21.3 4.4 37 110-146 4-41 (68)
32 PRK14865 rnpA ribonuclease P; 22.9 76 0.0017 24.0 2.4 18 115-132 60-77 (116)
33 PLN02350 phosphogluconate dehy 22.8 1.3E+02 0.0028 28.7 4.3 38 115-152 378-422 (493)
34 PF08713 DNA_alkylation: DNA a 22.8 3.2E+02 0.0069 21.4 5.9 45 103-147 154-198 (213)
35 PRK00499 rnpA ribonuclease P; 21.8 71 0.0015 24.0 2.0 18 115-132 53-70 (114)
36 PF11033 ComJ: Competence prot 21.7 32 0.0007 27.7 0.1 17 11-27 87-103 (125)
37 PF05280 FlhC: Flagellar trans 21.5 1.4E+02 0.0031 24.7 3.9 63 77-144 22-100 (175)
38 PRK06850 hypothetical protein; 20.9 84 0.0018 30.3 2.7 67 27-93 202-291 (507)
39 PF04399 Glutaredoxin2_C: Glut 20.5 1.6E+02 0.0035 23.4 3.9 41 115-156 27-67 (132)
40 TIGR02263 benz_CoA_red_C benzo 20.1 6.4E+02 0.014 22.7 8.0 48 115-162 136-187 (380)
No 1
>KOG3801|consensus
Probab=99.66 E-value=2.6e-16 Score=119.47 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=62.7
Q ss_pred cchhHHHHHHHHHHHhhhcCC--CchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccH---HHHHHHHHHHHh
Q psy15834 93 YWENPTMLSTKVFLHLGKDYP--KGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGE---FVVKEIQALYML 159 (175)
Q Consensus 93 wsRnqVLsLYKqLLRlGRdfP--ngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGE---yVvKEleALY~L 159 (175)
.||.+|++|||.+|++|++|| |+|+||.||+|+.|++|++++||.+|++++++|+ +++|++.-++.|
T Consensus 4 ~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~~l 75 (94)
T KOG3801|consen 4 VSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIGQL 75 (94)
T ss_pred ccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999 6999999999999999999999999999999999 888888877655
No 2
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.57 E-value=7.4e-15 Score=99.19 Aligned_cols=57 Identities=28% Similarity=0.533 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhhcCC--CchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHH
Q psy15834 97 PTMLSTKVFLHLGKDYP--KGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEI 153 (175)
Q Consensus 97 qVLsLYKqLLRlGRdfP--ngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEl 153 (175)
+||+|||+|||.++.|| +.++||++++|+.|++|++++||++|++++++|+....++
T Consensus 2 ~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l 60 (61)
T PF13232_consen 2 QVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELL 60 (61)
T ss_pred hHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999 4789999999999999999999999999999999877654
No 3
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.43 E-value=2.7e-13 Score=89.77 Aligned_cols=55 Identities=27% Similarity=0.553 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhhhcCCC--chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHH
Q psy15834 96 NPTMLSTKVFLHLGKDYPK--GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVV 150 (175)
Q Consensus 96 nqVLsLYKqLLRlGRdfPn--gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVv 150 (175)
.+|++|||++||.++.||+ .+++++.++|+.|++|++++||++|+.+++.|+.-.
T Consensus 1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l 57 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEEL 57 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 3799999999999999996 479999999999999999999999999999998643
No 4
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=97.94 E-value=4.2e-05 Score=55.94 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhcCCCch---------HHHHHHH----HHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHHHHhhhhHH
Q psy15834 98 TMLSTKVFLHLGKDYPKGF---------DYFRLRL----KNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRT 164 (175)
Q Consensus 98 VLsLYKqLLRlGRdfPngR---------eYFRRRi----R~aFRkNKnLTDPeeIkkaI~eGEyVvKEleALY~LkKYR~ 164 (175)
|++|||++||+-+.+|... ..+.+++ +++|+.+++..|+......+.+.+.++.-+.+ -+.|..
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~---qr~y~e 77 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKN---QREYKE 77 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 6899999999999998533 6777778 99999999999899999999999988776655 458999
Q ss_pred HHhhhhh
Q psy15834 165 LKQRLVL 171 (175)
Q Consensus 165 LKrRYy~ 171 (175)
|-.||-+
T Consensus 78 L~erYnp 84 (104)
T PF13233_consen 78 LLERYNP 84 (104)
T ss_pred HHhhccc
Confidence 9999844
No 5
>KOG3426|consensus
Probab=97.35 E-value=0.00045 Score=55.21 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHhhhcCCC-------chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHHH
Q psy15834 95 ENPTMLSTKVFLHLGKDYPK-------GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALY 157 (175)
Q Consensus 95 RnqVLsLYKqLLRlGRdfPn-------gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEleALY 157 (175)
|..|+.|||..-|.--.+-. ..+-+|.++|+.|++|.++|||.-|.-++-+|..-.||+.-..
T Consensus 23 Rrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv~~~ 92 (124)
T KOG3426|consen 23 RRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIVDHW 92 (124)
T ss_pred HHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHHHHH
Confidence 67899999999987654331 4578999999999999999999999999999998888876543
No 6
>KOG4620|consensus
Probab=96.83 E-value=0.0034 Score=47.03 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhhcCC--CCHHHHHHHHHccH
Q psy15834 96 NPTMLSTKVFLHLGKDYPK-GFDYFRLRLKNAFMKNAQV--QDPEKIDQMIKHGE 147 (175)
Q Consensus 96 nqVLsLYKqLLRlGRdfPn-gReYFRRRiR~aFRkNKnL--TDPeeIkkaI~eGE 147 (175)
.||++|||.+||.|+.=|. ...-|..=++.+|++|+++ .|---|+.++..|+
T Consensus 9 rqVlhlYR~~lraa~~Kp~~~~~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~ 63 (80)
T KOG4620|consen 9 RQVLHLYRDLLRAARGKPGAEARRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGR 63 (80)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhH
Confidence 5899999999999999885 4455666799999999998 56668888888876
No 7
>KOG3466|consensus
Probab=96.04 E-value=0.011 Score=48.80 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHHhhhcCCCch---HHHHHHHHHHHHhhcCCCCHHHHHHHHHccHH
Q psy15834 94 WENPTMLSTKVFLHLGKDYPKGF---DYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEF 148 (175)
Q Consensus 94 sRnqVLsLYKqLLRlGRdfPngR---eYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEy 148 (175)
.+.+|+.|||+.||.-..|-.+| -|+.-.+|.-|.+|++ .|-.++..+|++|+.
T Consensus 12 hkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~ 68 (157)
T KOG3466|consen 12 HKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGER 68 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHH
Confidence 47899999999999999998544 5566679999999998 999999999999983
No 8
>KOG4100|consensus
Probab=93.33 E-value=0.22 Score=40.10 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhhcCCC-----chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccH
Q psy15834 98 TMLSTKVFLHLGKDYPK-----GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGE 147 (175)
Q Consensus 98 VLsLYKqLLRlGRdfPn-----gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGE 147 (175)
|+-|||+.||+-|-.|. |-+| +|++||.+|++ +|.++.-.+.+=+
T Consensus 12 vrlLYkriLrlHr~lp~~~R~lGD~Y----VkdEFrrHk~v-np~~~~~FlteW~ 61 (125)
T KOG4100|consen 12 VRLLYKRILRLHRGLPAELRALGDQY----VKDEFRRHKTV-NPLEAQGFLTEWE 61 (125)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHH----HHHHHHHhccC-ChHHHHHHHHHHH
Confidence 44599999999999995 3344 67899999999 9999887776544
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=81.15 E-value=6.3 Score=27.40 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhhhcCCC---chHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy15834 95 ENPTMLSTKVFLHLGKDYPK---GFDYFRLRLKNAFMKNAQVQDPEKIDQMIK 144 (175)
Q Consensus 95 RnqVLsLYKqLLRlGRdfPn---gReYFRRRiR~aFRkNKnLTDPeeIkkaI~ 144 (175)
|.....||.+.|+.-.++|. +|.|.-.-++.-+.--+...|.++|++.|.
T Consensus 4 r~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i~ 56 (57)
T PF04716_consen 4 REALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKIG 56 (57)
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHhC
Confidence 44567999999999999994 667666666666666677899999998764
No 10
>PF15460 SAS4: Something about silencing, SAS, complex subunit 4
Probab=63.54 E-value=9.6 Score=29.37 Aligned_cols=37 Identities=32% Similarity=0.544 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHhhhh
Q psy15834 132 QVQDPEKIDQMIKHGEFVVKEIQALYMLKKYRTLKQRLV 170 (175)
Q Consensus 132 nLTDPeeIkkaI~eGEyVvKEleALY~LkKYR~LKrRYy 170 (175)
.++||..-+++-.+=++.++|++++ |.||+.+|++..
T Consensus 58 ~I~d~~d~~e~e~KR~lti~ei~~~--L~Kf~~wk~~~~ 94 (101)
T PF15460_consen 58 GINDPSDKKELEPKRELTIKEIQAM--LDKFENWKRREK 94 (101)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4678877777777888999999997 789999998853
No 11
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=53.51 E-value=8.3 Score=30.20 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHccH
Q psy15834 122 RLKNAFMKNAQVQDPEKIDQMIKHGE 147 (175)
Q Consensus 122 RiR~aFRkNKnLTDPeeIkkaI~eGE 147 (175)
.-|.+|-+.|.|++ +||+++++++.
T Consensus 24 ~~k~~FL~sKGLt~-~EI~~al~~a~ 48 (136)
T PF04695_consen 24 EKKIAFLESKGLTE-EEIDEALGRAG 48 (136)
T ss_dssp HHHHHHHHHCT--H-HHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCH-HHHHHHHHhcC
Confidence 35789999999996 77999998876
No 12
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.81 E-value=1.6e+02 Score=24.60 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHHH-------------------
Q psy15834 97 PTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALY------------------- 157 (175)
Q Consensus 97 qVLsLYKqLLRlGRdfPngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEleALY------------------- 157 (175)
.++..+|.++-.|+.|.+-..-|..-+.+ |... ..|++.|..++.+--...+|++...
T Consensus 20 kl~K~~~~~~~ag~~~~~a~~~F~~~L~~-~~~~--~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~ 96 (200)
T cd07603 20 KLLKLCNGMVDSGKTYVNANSLFVNSLND-LSDY--FRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFV 96 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888899888644555555554 3332 3455688899988888888876543
Q ss_pred --HhhhhHHHHhhhhh
Q psy15834 158 --MLKKYRTLKQRLVL 171 (175)
Q Consensus 158 --~LkKYR~LKrRYy~ 171 (175)
.|++++..||+|.-
T Consensus 97 k~dL~~vKE~kk~Fdk 112 (200)
T cd07603 97 KEDIKKVKESKKHFEK 112 (200)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 24778889988853
No 13
>KOG0810|consensus
Probab=34.41 E-value=2e+02 Score=25.92 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=54.9
Q ss_pred cccchhHHHHHHHHHHHhhhcCCC----chHHHHHH-HHHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHH----HHhhh
Q psy15834 91 LRYWENPTMLSTKVFLHLGKDYPK----GFDYFRLR-LKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQAL----YMLKK 161 (175)
Q Consensus 91 ~~wsRnqVLsLYKqLLRlGRdfPn----gReYFRRR-iR~aFRkNKnLTDPeeIkkaI~eGEyVvKEleAL----Y~LkK 161 (175)
+|=.|++.-.+.|.|...-.+|.. +++-.+.+ -|..|-.++..+|.++|+++++.|.--+.=..++ -...-
T Consensus 118 ~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~ 197 (297)
T KOG0810|consen 118 LRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQT 197 (297)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHH
Confidence 345677777888999999999994 44444444 4556677776889999999999998322222221 33445
Q ss_pred hHHHHhhhhhh
Q psy15834 162 YRTLKQRLVLI 172 (175)
Q Consensus 162 YR~LKrRYy~~ 172 (175)
++.++.|..++
T Consensus 198 l~Eiq~Rh~~i 208 (297)
T KOG0810|consen 198 LAEIQERHDEI 208 (297)
T ss_pred HHHHHHHHHHH
Confidence 67777776654
No 14
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=32.37 E-value=44 Score=24.72 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHhhcCC
Q psy15834 115 GFDYFRLRLKNAFMKNAQV 133 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnL 133 (175)
.|+.++|++|++|+.|.+.
T Consensus 58 ~RNriKR~lRe~~R~~~~~ 76 (111)
T PF00825_consen 58 KRNRIKRRLREAFRLNKPE 76 (111)
T ss_dssp HHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999774
No 15
>KOG2468|consensus
Probab=31.90 E-value=20 Score=34.89 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=16.4
Q ss_pred ccccchhhhhhHhhhcccchhH
Q psy15834 76 STGASMVGKHWILGLLRYWENP 97 (175)
Q Consensus 76 ~~~~~~~~~~~~~~~~~wsRnq 97 (175)
-|-|||+||. .|-.||++.+
T Consensus 423 DTmASiiG~r--~G~~RW~~Tk 442 (510)
T KOG2468|consen 423 DTMASIIGKR--YGRIRWSGTK 442 (510)
T ss_pred hHHHHHHhhh--hcceecCCCc
Confidence 3559999997 5999999863
No 16
>PF05674 DUF816: Baculovirus protein of unknown function (DUF816); InterPro: IPR008534 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf106. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes proteins that are about 200 amino acids in length. The proteins are all from baculoviruses. This family includes ORF107 from Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) and a variety of other numbered ORF proteins, such as ORF52 Q91F03 from SWISSPROT, ORF140 Q9YMI8 from SWISSPROT from other baculoviruses. The function of these proteins is unknown.
Probab=30.64 E-value=1.3e+02 Score=25.60 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHHH
Q psy15834 99 MLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQ 154 (175)
Q Consensus 99 LsLYKqLLRlGRdfPngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEle 154 (175)
-.=-..|+-...=.|..---+.+++|++|.+|-+-.+=+.|++++.+.+||..+++
T Consensus 13 adkcs~LIes~~mLp~nvl~iik~A~~ey~~~Pt~~Ny~~iKkLf~qtkYvddsId 68 (171)
T PF05674_consen 13 ADKCSALIESENMLPDNVLAIIKTARDEYFENPTDKNYENIKKLFSQTKYVDDSID 68 (171)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhhhhcchh
Confidence 34456677777777865566778999999999999999999999999999998775
No 17
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.58 E-value=1.7e+02 Score=29.09 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=19.6
Q ss_pred CCCcccchhhhccccchhhhh-h--HhhhcccchhHHH
Q psy15834 65 NLPSTACCTILSTGASMVGKH-W--ILGLLRYWENPTM 99 (175)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~wsRnqVL 99 (175)
||--.-|-.|--.--|.+|.| | |||.+.|-=+-+.
T Consensus 170 nL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~ 207 (622)
T COG5185 170 NLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLII 207 (622)
T ss_pred hcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHH
Confidence 343445555554445555554 3 8888888544433
No 18
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=28.20 E-value=38 Score=31.98 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=46.7
Q ss_pred CcccCchhHHHHHHHHHhh---------hhHhhhhhcc-----ccee-eccCCCCCCcccc--hhhhccccc---hh---
Q psy15834 26 GFPMSDMKTTAINQFLHNK---------ILNFIVMTQQ-----GLWV-NSFNSCNLPSTAC--CTILSTGAS---MV--- 82 (175)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~--~~~~~~~~~---~~--- 82 (175)
=.|+.|..+..+-.+|+.. -|+-+-.... ++-+ .+-.||.-.-..| ||..+--.| |+
T Consensus 182 ~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGCw~Ct~v~~Dksl~~mi~~d 261 (447)
T TIGR03183 182 YSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSRFGCWVCTMVSEDKSMNAMIQND 261 (447)
T ss_pred EEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCCCCeeeCcCccchHHHHHHhcCC
Confidence 3588888888888887553 1221111111 1111 1345776566666 777654444 45
Q ss_pred -hhhhHhhhcccchhHHH-----HHHHHHHHh
Q psy15834 83 -GKHWILGLLRYWENPTM-----LSTKVFLHL 108 (175)
Q Consensus 83 -~~~~~~~~~~wsRnqVL-----sLYKqLLRl 108 (175)
|++|.-+|+++ |+.+. .-||...|.
T Consensus 262 ~~~~w~~pL~~f-r~~l~~~~~d~~~R~~~rr 292 (447)
T TIGR03183 262 SEKEWMKPLLDF-RNKLDGIENDRDKRDFRRM 292 (447)
T ss_pred CchHHHHHHHHH-HHHHHhhhcchhhhhhhcC
Confidence 89999999885 34444 345554443
No 19
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=28.09 E-value=80 Score=25.21 Aligned_cols=60 Identities=10% Similarity=0.198 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHHhhhcCC--CchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHH
Q psy15834 94 WENPTMLSTKVFLHLGKDYP--KGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQAL 156 (175)
Q Consensus 94 sRnqVLsLYKqLLRlGRdfP--ngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEleAL 156 (175)
|...|-..+.+|+. -.|. +.-||--..+|+.|+++|. +.--..++++++....++|++++
T Consensus 7 W~~~v~~~~~kL~~--PR~~~~~lpEFaT~~A~~yf~~kKe-~~~G~F~~~l~~t~~~i~~l~~~ 68 (128)
T cd03199 7 WLKKVGPYYNKLLY--PRFVKADLPEFATQSARDYFIEKKE-KSIGSFDALLANTPQYIAALNAL 68 (128)
T ss_pred HHHHHHHHHHhHHc--CccccCCCCccCCHHHHHHHHHHHH-hhhCCHHHHHHccHHHHHHHHHH
Confidence 34555555555542 1111 1235666777777776663 22334556666666666655554
No 20
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=27.31 E-value=1.8e+02 Score=20.11 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=18.7
Q ss_pred CHHHHHHHHHccHHHHHHHHH
Q psy15834 135 DPEKIDQMIKHGEFVVKEIQA 155 (175)
Q Consensus 135 DPeeIkkaI~eGEyVvKEleA 155 (175)
++++.+++++.++.+++.++-
T Consensus 97 ~~~~a~~~i~~a~~i~~~ve~ 117 (118)
T PF05168_consen 97 SEEEAEEAIEKAEEIIEWVEE 117 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999988763
No 21
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=27.27 E-value=1.2e+02 Score=29.06 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHhhhcCCC----chHHHH---------------HHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHHHH
Q psy15834 95 ENPTMLSTKVFLHLGKDYPK----GFDYFR---------------LRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQA 155 (175)
Q Consensus 95 RnqVLsLYKqLLRlGRdfPn----gReYFR---------------RRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEleA 155 (175)
+.....|+-.|.+.|.+|+- ..-|.- +.+|++++++..+.+...++...+.++.+..+++-
T Consensus 115 k~~l~~lv~~L~~vg~Hy~RKe~lIfp~~Er~GitapptVmW~~dDeiRe~lk~~~~~l~~~s~~~~ve~~~~~~t~i~d 194 (409)
T COG2461 115 KEKLVELVSELDKIGKHYTRKEMLIFPYIERRGITAPPTVMWVKDDEIREALKELLKLLKEVSIEEFVEKAESVLTEIED 194 (409)
T ss_pred HHHHHHHHHHHHHhccccccccccchhHHHHcCCCCCCeeeeccCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 34446788888888888882 334444 44999999999999999999999999999999999
Q ss_pred HHHhh
Q psy15834 156 LYMLK 160 (175)
Q Consensus 156 LY~Lk 160 (175)
+.+..
T Consensus 195 mIFkE 199 (409)
T COG2461 195 MIFKE 199 (409)
T ss_pred HHHhh
Confidence 88765
No 22
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=27.00 E-value=48 Score=26.16 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=19.7
Q ss_pred hhhc-CCC--chHHHHHHHHHHHHhhcCC
Q psy15834 108 LGKD-YPK--GFDYFRLRLKNAFMKNAQV 133 (175)
Q Consensus 108 lGRd-fPn--gReYFRRRiR~aFRkNKnL 133 (175)
.|++ +.+ .|+-++|++|++||.|++.
T Consensus 56 VsKK~~g~AV~RNRiKR~lREa~R~~~~~ 84 (133)
T PRK01903 56 VSKKRVPRAVKRNRIKRLMREAYRLEKHV 84 (133)
T ss_pred EecccCCchhhhhHHHHHHHHHHHHhHhh
Confidence 3455 443 7899999999999998873
No 23
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=26.97 E-value=21 Score=33.19 Aligned_cols=29 Identities=28% Similarity=0.696 Sum_probs=21.9
Q ss_pred CCCccccCcccCchhHHHHHHHHHhhhhHhhhhhcccceeec
Q psy15834 19 PDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNS 60 (175)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (175)
+.+||--|||.| |..+. -++..||||.|-
T Consensus 141 e~~~f~RGyPfS-~Regv------------~~~~s~GLWln~ 169 (348)
T PF03214_consen 141 EGADFPRGYPFS-LREGV------------DTAASAGLWLNV 169 (348)
T ss_pred ccCcccCCCCcc-cccCC------------ceeeecccccCC
Confidence 578999999999 55432 257789999864
No 24
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=26.86 E-value=1.5e+02 Score=22.24 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHhhhcCCC----chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccH
Q psy15834 95 ENPTMLSTKVFLHLGKDYPK----GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGE 147 (175)
Q Consensus 95 RnqVLsLYKqLLRlGRdfPn----gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGE 147 (175)
++++-.|-+.+...-.+|.. +++..+.++++..+--..--.+++|++++..|.
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~~~ 143 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLESGN 143 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHcCC
Confidence 55666777888888888884 556666676666665553445678999998873
No 25
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=25.96 E-value=25 Score=32.68 Aligned_cols=28 Identities=29% Similarity=0.623 Sum_probs=23.4
Q ss_pred CCCccccCcccCchhHHHHHHHHHhhhhHhhhhhcccceee
Q psy15834 19 PDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVN 59 (175)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (175)
|.+||-=|||.|-+.+ .-|+..+|||.|
T Consensus 143 ~g~~fvRGYPfS~R~g-------------v~vaiS~GLWln 170 (346)
T PLN03180 143 EGADFVRGYPFSLREG-------------VPTAVSHGLWLN 170 (346)
T ss_pred cCCcccCCCCccccCC-------------cceEEecccccC
Confidence 5789999999998874 167788999998
No 26
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=24.51 E-value=62 Score=23.99 Aligned_cols=19 Identities=5% Similarity=0.218 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHhhcCC
Q psy15834 115 GFDYFRLRLKNAFMKNAQV 133 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnL 133 (175)
.|+.++|++|++|+.+++.
T Consensus 56 ~RNriKR~lRe~~R~~~~~ 74 (105)
T TIGR00188 56 ERNRIKRLIREVFRERQEL 74 (105)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 6899999999999998763
No 27
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=23.29 E-value=1.1e+02 Score=29.74 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=47.9
Q ss_pred hhhcccchhHHHHHHHHHHHhhhcCCC----chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccH
Q psy15834 88 LGLLRYWENPTMLSTKVFLHLGKDYPK----GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGE 147 (175)
Q Consensus 88 ~~~~~wsRnqVLsLYKqLLRlGRdfPn----gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGE 147 (175)
-|-++|+-.++..-||.|---|-||.. +..-=|++++.-|.+-. -.+|+-|.++++..+
T Consensus 363 ~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Ee-k~nP~rIn~aL~~kk 425 (507)
T COG5118 363 KGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEE-KVNPERINEALNEKK 425 (507)
T ss_pred CCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHh-hhCHHHHHHHHhccC
Confidence 378999999999999999999999883 33445677888888554 478999999998765
No 28
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=23.26 E-value=49 Score=20.73 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=21.8
Q ss_pred hhhhHhhhhhcccceeeccCCC-CCCcccchhhh
Q psy15834 43 NKILNFIVMTQQGLWVNSFNSC-NLPSTACCTIL 75 (175)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 75 (175)
.++.+||...|+ .-.+|+.| +-|+.+|-|..
T Consensus 4 ~~~~~~l~~~Q~--~dGGf~~~~~~~~d~~~t~~ 35 (44)
T PF00432_consen 4 EKLIRFLLSCQN--PDGGFGGRPGGESDTCYTYC 35 (44)
T ss_dssp HHHHHHHHHTBB--TTSSBBSSTTSSBBHHHHHH
T ss_pred HHHHHHHHHHCC--CCCCCCCCCCCCCChHHHHH
Confidence 578889988887 66677665 55777666543
No 29
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=23.25 E-value=1.3e+02 Score=23.28 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=25.1
Q ss_pred HHHHHccHHHHHHHHHHHHhh----hhHHHHhhhhhhh
Q psy15834 140 DQMIKHGEFVVKEIQALYMLK----KYRTLKQRLVLII 173 (175)
Q Consensus 140 kkaI~eGEyVvKEleALY~Lk----KYR~LKrRYy~~~ 173 (175)
++.|++|..+.+|++.+.... +-..+-.|||+.|
T Consensus 42 ~~qI~~g~~iL~~i~~~l~~~~~~~~i~~lsn~fYtlI 79 (133)
T PF02877_consen 42 KEQIEKGYEILKEIEELLKEQERRSKIEDLSNRFYTLI 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHC
Confidence 566788888999998887722 3346778888876
No 30
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=23.23 E-value=2.2e+02 Score=19.59 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=18.2
Q ss_pred cCCCCHHHHHHHHHccHHHHHHHHH
Q psy15834 131 AQVQDPEKIDQMIKHGEFVVKEIQA 155 (175)
Q Consensus 131 KnLTDPeeIkkaI~eGEyVvKEleA 155 (175)
++--|+++|++++++-.....|+..
T Consensus 81 ~~~~D~~~i~a~~~~~~~~~~~l~~ 105 (125)
T PF13801_consen 81 APPPDEAAIEALLEEIREAQAELRQ 105 (125)
T ss_dssp CSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999999988766666544
No 31
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=22.97 E-value=2e+02 Score=21.34 Aligned_cols=37 Identities=16% Similarity=0.428 Sum_probs=27.0
Q ss_pred hcCC-CchHHHHHHHHHHHHhhcCCCCHHHHHHHHHcc
Q psy15834 110 KDYP-KGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHG 146 (175)
Q Consensus 110 RdfP-ngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eG 146 (175)
-||. +..-=|..|+.+.|++.-.-..|+++++++++-
T Consensus 4 ~dYse~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~R 41 (68)
T PF09164_consen 4 ADYSENTFTEYKKRLAERLRAKLPDATPTELKELVEKR 41 (68)
T ss_dssp TTTTTS-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4566 233446889999999999999999999998763
No 32
>PRK14865 rnpA ribonuclease P; Provisional
Probab=22.91 E-value=76 Score=24.04 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=9.6
Q ss_pred chHHHHHHHHHHHHhhcC
Q psy15834 115 GFDYFRLRLKNAFMKNAQ 132 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKn 132 (175)
.|+-++|++|++||.+++
T Consensus 60 ~RNRiKR~lRE~~R~~~~ 77 (116)
T PRK14865 60 VRNRIKRLVREFYRLNKS 77 (116)
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 445555555555555443
No 33
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=22.82 E-value=1.3e+02 Score=28.69 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHhhcCCCCH-------HHHHHHHHccHHHHHH
Q psy15834 115 GFDYFRLRLKNAFMKNAQVQDP-------EKIDQMIKHGEFVVKE 152 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnLTDP-------eeIkkaI~eGEyVvKE 152 (175)
.|..|++.++++|++|.++.+- +.+.+....++.++.+
T Consensus 378 Irs~lL~~i~~a~~~~~~l~~l~~~~~~~~~~~~~~~~~r~~V~~ 422 (493)
T PLN02350 378 IRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVVSL 422 (493)
T ss_pred eeHhHHHHHHHHHHcCCChhhhcCCHHHHHHHHHhhhHHHHHHHH
Confidence 4689999999999999987775 6677777788877765
No 34
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=22.78 E-value=3.2e+02 Score=21.36 Aligned_cols=45 Identities=11% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccH
Q psy15834 103 KVFLHLGKDYPKGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGE 147 (175)
Q Consensus 103 KqLLRlGRdfPngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGE 147 (175)
..++.....--...+||.++...-+-..-..+||+.+.+.+++-.
T Consensus 154 ~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~~ 198 (213)
T PF08713_consen 154 DELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQKNS 198 (213)
T ss_dssp HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS-
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc
Confidence 444445444444568999998888888888999999999998743
No 35
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=21.76 E-value=71 Score=24.02 Aligned_cols=18 Identities=6% Similarity=0.089 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHhhcC
Q psy15834 115 GFDYFRLRLKNAFMKNAQ 132 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKn 132 (175)
.|+-++|++|++|+.|++
T Consensus 53 ~RNriKR~lRE~~R~~~~ 70 (114)
T PRK00499 53 VRNRIKRLIRESFRELKD 70 (114)
T ss_pred hHhHHHHHHHHHHHHhhh
Confidence 789999999999999876
No 36
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=21.68 E-value=32 Score=27.69 Aligned_cols=17 Identities=47% Similarity=0.899 Sum_probs=14.2
Q ss_pred ehhhccccCCCccccCc
Q psy15834 11 YKTVSMSLPDGDYQLGF 27 (175)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (175)
=++.+..+|.|+|+|-|
T Consensus 87 s~~~~~~ip~G~Y~Lv~ 103 (125)
T PF11033_consen 87 SEKLSFDIPKGDYQLVF 103 (125)
T ss_pred cCcEEEecCCCcEEEEE
Confidence 35789999999999865
No 37
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=21.52 E-value=1.4e+02 Score=24.73 Aligned_cols=63 Identities=25% Similarity=0.222 Sum_probs=31.7
Q ss_pred cccchhhhhhHhhhcccchhHHHHHHHHHHHhhhcCCCch-----HHHH---HH--------HHHHHHhhcCCCCHHHHH
Q psy15834 77 TGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDYPKGF-----DYFR---LR--------LKNAFMKNAQVQDPEKID 140 (175)
Q Consensus 77 ~~~~~~~~~~~~~~~~wsRnqVLsLYKqLLRlGRdfPngR-----eYFR---RR--------iR~aFRkNKnLTDPeeIk 140 (175)
-||-+-=-+...| =|+.+++.|||++ .|..=|.|+ +.|. .+ +-..+.++....|++.+-
T Consensus 22 lGaR~q~l~~et~---Ls~~rl~~Lykel--~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~~~~~~~ieAli 96 (175)
T PF05280_consen 22 LGARLQVLESETG---LSRERLRRLYKEL--HGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRKNAGCSDIEALI 96 (175)
T ss_dssp TT--SCCHHHHSS---S-HHHHHHHHHHH--CSS----S-----THHHHSCHHHHHHHHHHHHHHHHHHCTT--SHHHHH
T ss_pred cCcHHHHHHHHHC---CCHHHHHHHHHHH--cCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3444333344444 4899999999998 466555432 5554 22 223334556677888777
Q ss_pred HHHH
Q psy15834 141 QMIK 144 (175)
Q Consensus 141 kaI~ 144 (175)
+++.
T Consensus 97 ~Ayr 100 (175)
T PF05280_consen 97 KAYR 100 (175)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 38
>PRK06850 hypothetical protein; Provisional
Probab=20.89 E-value=84 Score=30.34 Aligned_cols=67 Identities=27% Similarity=0.511 Sum_probs=39.3
Q ss_pred cccCchhHHHHHHHHHh---------hhhHhhhhhccc-----cee-eccCCCCCCcccc--hhhhccccch-----hhh
Q psy15834 27 FPMSDMKTTAINQFLHN---------KILNFIVMTQQG-----LWV-NSFNSCNLPSTAC--CTILSTGASM-----VGK 84 (175)
Q Consensus 27 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~--~~~~~~~~~~-----~~~ 84 (175)
.|+.|..+..+=.||.. .-|+-+-....| +-+ .+-.||.-....| ||..+---|| -|.
T Consensus 202 ~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGCwvCt~v~~DKSme~mi~~~~ 281 (507)
T PRK06850 202 TPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTPSCGNSRFGCWVCTVVTKDKSMEAMIQNGE 281 (507)
T ss_pred eChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCCCCCCCCCCccccccccchhhHHHHHhcCh
Confidence 58888888888777754 222222221111 111 2356787777788 7766655555 245
Q ss_pred h-hHhhhccc
Q psy15834 85 H-WILGLLRY 93 (175)
Q Consensus 85 ~-~~~~~~~w 93 (175)
+ |+-+|+++
T Consensus 282 ~~w~~pL~~~ 291 (507)
T PRK06850 282 EKWMQPLLDF 291 (507)
T ss_pred HHHHHHHHHH
Confidence 6 88888874
No 39
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=20.52 E-value=1.6e+02 Score=23.43 Aligned_cols=41 Identities=7% Similarity=0.137 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHH
Q psy15834 115 GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQAL 156 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEleAL 156 (175)
.-|+--..+|+.|+++|. +.-...++++++....++|+++.
T Consensus 27 lpEFat~~Ar~yf~~kKe-~~~g~F~~~l~~t~~~i~~l~~~ 67 (132)
T PF04399_consen 27 LPEFATPSARAYFREKKE-KSIGSFEELLAKTPELIAELNAD 67 (132)
T ss_dssp -GGG-SHHHHHHHHCCCC-CCHTHHHHHHHCHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHhhc-cccCCHHHHHHcCHHHHHHHHHH
Confidence 347777889999998885 55557888888888777777765
No 40
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=20.11 E-value=6.4e+02 Score=22.68 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHH---HhhcCC-CCHHHHHHHHHccHHHHHHHHHHHHhhhh
Q psy15834 115 GFDYFRLRLKNAF---MKNAQV-QDPEKIDQMIKHGEFVVKEIQALYMLKKY 162 (175)
Q Consensus 115 gReYFRRRiR~aF---RkNKnL-TDPeeIkkaI~eGEyVvKEleALY~LkKY 162 (175)
..+|+++++++.- .+.-+. -|+++++++|+.-....+-+..+|.|++-
T Consensus 136 ~~~Y~~~el~~l~~~LE~~~G~~it~e~L~~aI~~~N~~R~~~~~l~~l~~~ 187 (380)
T TIGR02263 136 GGEFYTAELNELCEGLEHLSGKKITDDAIRASIAVFNDNRKLIQALYGLRAD 187 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3678887765532 232222 26788999988888888877777777653
Done!