Query psy15834
Match_columns 175
No_of_seqs 110 out of 233
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 22:35:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ff5_A PEX14P, peroxisomal bio 61.1 4.8 0.00016 27.2 2.2 23 123-146 32-54 (54)
2 2w84_A Peroxisomal membrane pr 46.1 15 0.0005 26.1 2.8 23 123-146 37-59 (70)
3 2p4q_A 6-phosphogluconate dehy 34.8 39 0.0013 30.0 4.4 38 115-152 375-419 (497)
4 2iz1_A 6-phosphogluconate dehy 34.8 30 0.001 30.2 3.6 38 115-152 370-414 (474)
5 2zyd_A 6-phosphogluconate dehy 34.7 36 0.0012 30.0 4.1 38 115-152 378-422 (480)
6 1a6f_A RNAse P protein, ribonu 27.6 37 0.0013 24.6 2.5 19 115-133 59-77 (119)
7 1nz0_A Ribonuclease P protein 26.9 39 0.0013 24.4 2.5 19 115-133 60-78 (118)
8 1d6t_A Ribonuclease P, RNAse P 25.9 39 0.0013 24.4 2.3 19 115-133 58-76 (117)
9 4b4c_A Chromodomain-helicase-D 24.8 1.4E+02 0.0049 22.8 5.5 22 89-110 6-27 (211)
10 1dn1_B Syntaxin 1A, syntaxin b 24.7 87 0.003 25.6 4.5 56 92-147 114-173 (267)
11 2ljp_A Ribonuclease P protein 23.7 41 0.0014 24.3 2.1 19 115-133 61-79 (119)
12 4ekf_A Adenain; alpha and beta 21.9 33 0.0011 28.7 1.4 56 55-110 23-96 (204)
13 1s94_A S-syntaxin; three helix 20.9 9.4 0.00032 29.2 -1.9 55 92-146 122-180 (180)
14 2vug_A PAB1020; RNA, ligase, A 20.8 1.2E+02 0.0043 26.4 5.0 49 103-151 255-308 (389)
No 1
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=61.06 E-value=4.8 Score=27.21 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHcc
Q psy15834 123 LKNAFMKNAQVQDPEKIDQMIKHG 146 (175)
Q Consensus 123 iR~aFRkNKnLTDPeeIkkaI~eG 146 (175)
-|.+|-+.|++|+ ++|+++++++
T Consensus 32 ~K~~FL~sKGLt~-~EI~~Al~rs 54 (54)
T 3ff5_A 32 TRRAFLKKKGLTD-EEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHC
T ss_pred HHHHHHHHcCCCH-HHHHHHHHcC
Confidence 5789999999996 6799998763
No 2
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=46.09 E-value=15 Score=26.11 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHcc
Q psy15834 123 LKNAFMKNAQVQDPEKIDQMIKHG 146 (175)
Q Consensus 123 iR~aFRkNKnLTDPeeIkkaI~eG 146 (175)
-|.+|-+.|.||+ ++|+++++++
T Consensus 37 ~K~~FL~sKGLt~-eEI~~Al~ra 59 (70)
T 2w84_A 37 TRRAFLKKKGLTD-EEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHc
Confidence 5789999999995 7799999875
No 3
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=34.84 E-value=39 Score=30.02 Aligned_cols=38 Identities=5% Similarity=0.067 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHHhhcCCCC-------HHHHHHHHHccHHHHHH
Q psy15834 115 GFDYFRLRLKNAFMKNAQVQD-------PEKIDQMIKHGEFVVKE 152 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnLTD-------PeeIkkaI~eGEyVvKE 152 (175)
.|..|+..++++|.+|.++.+ .+.|++..+.++.++.+
T Consensus 375 Irs~~l~~i~~a~~~~~~l~~l~~~~~f~~~~~~~~~~~r~~v~~ 419 (497)
T 2p4q_A 375 IRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIAL 419 (497)
T ss_dssp TCBHHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCChhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999988 57888888888877775
No 4
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=34.76 E-value=30 Score=30.15 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHhhcCCCC-------HHHHHHHHHccHHHHHH
Q psy15834 115 GFDYFRLRLKNAFMKNAQVQD-------PEKIDQMIKHGEFVVKE 152 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnLTD-------PeeIkkaI~eGEyVvKE 152 (175)
.|..|+..++++|.+|.++.+ .+.|++....++.++.+
T Consensus 370 irs~~l~~i~~a~~~~~~l~~l~~~~~~~~~~~~~~~~~r~~v~~ 414 (474)
T 2iz1_A 370 IRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSL 414 (474)
T ss_dssp TCBTTHHHHHHHHHHCTTCCCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999988 57888888888887775
No 5
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=34.69 E-value=36 Score=30.02 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHhhcCCCC-------HHHHHHHHHccHHHHHH
Q psy15834 115 GFDYFRLRLKNAFMKNAQVQD-------PEKIDQMIKHGEFVVKE 152 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnLTD-------PeeIkkaI~eGEyVvKE 152 (175)
.|..|+..++++|.+|.++.+ .+.|++..+.++.++.+
T Consensus 378 Irs~~l~~i~~a~~~~~~l~~l~~~~~f~~~~~~~~~~~r~~v~~ 422 (480)
T 2zyd_A 378 IRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAY 422 (480)
T ss_dssp TCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCChHhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999988 57788888788877775
No 6
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=27.62 E-value=37 Score=24.64 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHhhcCC
Q psy15834 115 GFDYFRLRLKNAFMKNAQV 133 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnL 133 (175)
.|+.++|++|++||.+++.
T Consensus 59 ~RNRiKR~lRE~~R~~~~~ 77 (119)
T 1a6f_A 59 MRNRIKRLIRQAFLEEKER 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred hHhHHHHHHHHHHHHhhcc
Confidence 6799999999999999774
No 7
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=26.92 E-value=39 Score=24.35 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHhhcCC
Q psy15834 115 GFDYFRLRLKNAFMKNAQV 133 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnL 133 (175)
.|+.++|++|++|+.+++.
T Consensus 60 ~RNRiKR~lRE~~R~~~~~ 78 (118)
T 1nz0_A 60 RRNKLKRWVREIFRRNKGV 78 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHhHHHHHHHHHHHHHHhh
Confidence 6789999999999999874
No 8
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=25.86 E-value=39 Score=24.42 Aligned_cols=19 Identities=5% Similarity=0.044 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHhhcCC
Q psy15834 115 GFDYFRLRLKNAFMKNAQV 133 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnL 133 (175)
.|+.++|++|++|+.+++.
T Consensus 58 ~RNRiKR~lRE~~R~~~~~ 76 (117)
T 1d6t_A 58 LRNKIKRAIRENFKVHKSH 76 (117)
T ss_dssp HHHHHHHHHHHHHHHGGGT
T ss_pred HHhHHHHHHHHHHHHhhcc
Confidence 7899999999999999774
No 9
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=24.83 E-value=1.4e+02 Score=22.80 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=18.2
Q ss_pred hhcccchhHHHHHHHHHHHhhh
Q psy15834 89 GLLRYWENPTMLSTKVFLHLGK 110 (175)
Q Consensus 89 ~~~~wsRnqVLsLYKqLLRlGR 110 (175)
+...|++.++.++||.+.|-|.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~ 27 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGG 27 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSS
T ss_pred cCCCCCHHHHHHHHHHHHHHCC
Confidence 4567999999999999999993
No 10
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=24.74 E-value=87 Score=25.55 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=40.3
Q ss_pred ccchhHHHHHHHHHHHhhhcCCC----chHHHHHHHHHHHHhhcCCCCHHHHHHHHHccH
Q psy15834 92 RYWENPTMLSTKVFLHLGKDYPK----GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGE 147 (175)
Q Consensus 92 ~wsRnqVLsLYKqLLRlGRdfPn----gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGE 147 (175)
|=-++++-.|-+.|.....+|.. +++-.++++.+-++--..-.++++|+++++.|.
T Consensus 114 Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~ 173 (267)
T 1dn1_B 114 RIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGN 173 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCc
Confidence 33467788999999999999994 555566666666664444456788999887764
No 11
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=23.66 E-value=41 Score=24.30 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHhhcCC
Q psy15834 115 GFDYFRLRLKNAFMKNAQV 133 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnL 133 (175)
.|+.++|++|++|+.+++.
T Consensus 61 ~RNRiKR~lRe~~R~~~~~ 79 (119)
T 2ljp_A 61 ERNRIKRLTRESFRLRQHE 79 (119)
T ss_dssp HHHHHHHHHHHHHTTCTTT
T ss_pred HHhHHHHHHHHHHHHHHhc
Confidence 6899999999999998764
No 12
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=21.88 E-value=33 Score=28.70 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=37.5
Q ss_pred cceeeccCCCCCCcccchhhhccccchh-hhhhHh-------------hhcccchhHHHHHHH----HHHHhhh
Q psy15834 55 GLWVNSFNSCNLPSTACCTILSTGASMV-GKHWIL-------------GLLRYWENPTMLSTK----VFLHLGK 110 (175)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~wsRnqVLsLYK----qLLRlGR 110 (175)
|..-.+|---.-|+-.+|.|+-||.-.- |-|||. --+-||-.+..++|+ .|||-+.
T Consensus 23 GtFDkrFPGFl~~~k~a~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDPfG~sd~~L~qiY~F~Y~~llkRSA 96 (204)
T 4ekf_A 23 GTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSA 96 (204)
T ss_dssp EEEESSCCSCCCTTSCEEEEEESCC----CCCEEEEEEETTTTEEEEECTBTTCSHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCCCccCCCCcceeEEecCCcccCceeEEEeEecCCcceEEEeCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 4444555555557788899999998665 579984 235699999999875 5565443
No 13
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.94 E-value=9.4 Score=29.16 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=22.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCCC----chHHHHHHHHHHHHhhcCCCCHHHHHHHHHcc
Q psy15834 92 RYWENPTMLSTKVFLHLGKDYPK----GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHG 146 (175)
Q Consensus 92 ~wsRnqVLsLYKqLLRlGRdfPn----gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eG 146 (175)
|=-++++-.|-++|.....+|.. +++-.+.++.+-|+=-..-.++++|+++++.|
T Consensus 122 Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCc
Confidence 44467788899999999998884 45555555555555444445567888888765
No 14
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=20.80 E-value=1.2e+02 Score=26.44 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=35.1
Q ss_pred HH-HHHhhhcCCC--chHHHHHH-HHHHHHhh-cCCCCHHHHHHHHHccHHHHH
Q psy15834 103 KV-FLHLGKDYPK--GFDYFRLR-LKNAFMKN-AQVQDPEKIDQMIKHGEFVVK 151 (175)
Q Consensus 103 Kq-LLRlGRdfPn--gReYFRRR-iR~aFRkN-KnLTDPeeIkkaI~eGEyVvK 151 (175)
+. .+..|-+||+ +++|+..| +|.+|..- -+..|.+...-+..-|+-+..
T Consensus 255 r~~dlaiA~Kfp~e~~~~~~~~r~~R~~~~~~e~~~~~~e~~~~~~~~G~~~~~ 308 (389)
T 2vug_A 255 NINDIKIGARVFYELPPGYFTSRISRLAFYLAEKRIKGEEFERVAKELGSALLQ 308 (389)
T ss_dssp HHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEeccccccchhhhhhhhhhhcceecccCccHHHHHHHHhcCchhhh
Confidence 44 6778899994 77887755 89999944 366778866777777774443
Done!