Query psy15834
Match_columns 175
No_of_seqs 110 out of 233
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 22:35:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15834.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15834hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw5b1 a.4.1.3 (B:376-440) RE 42.6 7.7 0.00056 23.9 2.5 48 92-139 7-58 (65)
2 d1g7oa1 a.45.1.1 (A:76-215) Gl 38.3 16 0.0012 26.6 4.1 61 94-157 14-76 (140)
3 d1a6fa_ d.14.1.2 (A:) RNase P 34.3 12 0.00089 24.9 2.6 18 115-132 58-75 (113)
4 d1nz0a_ d.14.1.2 (A:) RNase P 34.2 11 0.00078 25.1 2.3 18 115-132 51-68 (109)
5 d1f3ka_ g.3.6.1 (A:) Conotoxin 30.9 8.9 0.00065 21.2 1.1 20 62-81 6-25 (26)
6 d1pu1a_ d.266.1.1 (A:) Hypothe 29.1 13 0.00091 25.5 1.9 17 35-51 12-28 (91)
7 d1gs0a1 a.41.1.1 (A:207-340) D 27.2 19 0.0014 25.6 2.7 34 140-173 42-79 (134)
8 d1d6ta_ d.14.1.2 (A:) RNase P 25.7 18 0.0013 24.2 2.2 19 115-133 58-76 (117)
9 d1kxpd3 a.126.1.1 (D:405-473) 22.7 46 0.0034 21.9 3.8 37 110-146 4-41 (69)
10 d1efya1 a.41.1.1 (A:662-796) D 21.9 41 0.003 23.6 3.7 34 140-173 42-79 (135)
No 1
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.61 E-value=7.7 Score=23.86 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=32.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCchHHHH----HHHHHHHHhhcCCCCHHHH
Q psy15834 92 RYWENPTMLSTKVFLHLGKDYPKGFDYFR----LRLKNAFMKNAQVQDPEKI 139 (175)
Q Consensus 92 ~wsRnqVLsLYKqLLRlGRdfPngReYFR----RRiR~aFRkNKnLTDPeeI 139 (175)
+|+-.+...++..+-..|++|+....++- ..+++-|...+.--+..++
T Consensus 7 ~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~~~~~~~ 58 (65)
T d2iw5b1 7 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 58 (65)
T ss_dssp SCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhhcCHHHH
Confidence 69999999999999999999886555554 3355555555443333333
No 2
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=38.30 E-value=16 Score=26.59 Aligned_cols=61 Identities=10% Similarity=0.179 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHHhhhcCC--CchHHHHHHHHHHHHhhcCCCCHHHHHHHHHccHHHHHHHHHHH
Q psy15834 94 WENPTMLSTKVFLHLGKDYP--KGFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHGEFVVKEIQALY 157 (175)
Q Consensus 94 sRnqVLsLYKqLLRlGRdfP--ngReYFRRRiR~aFRkNKnLTDPeeIkkaI~eGEyVvKEleALY 157 (175)
|...|-..+.+|++= .|. ..-||--..+|++|+++|. +.....++++++....++|+++..
T Consensus 14 W~k~v~~~~~kL~~P--R~~~~~lpEF~T~~A~~~f~~kKe-~~~g~f~~~l~~t~~li~~l~~~L 76 (140)
T d1g7oa1 14 WLRKVNGYANKLLLP--RFAKSAFDEFSTPAARKYFVDKKE-ASAGNFADLLAHSDGLIKNISDDL 76 (140)
T ss_dssp HHHHHHHHHHHHHHH--HHHHTTCGGGCSHHHHHHHHTTTT-TTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--cccCCCCcccCCHHHHHHHHHhhh-hhcCCHHHHHHcCHHHHHHHHHHH
Confidence 455666666666631 111 2446777889999987764 445568888888887888777653
No 3
>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]}
Probab=34.29 E-value=12 Score=24.94 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHhhcC
Q psy15834 115 GFDYFRLRLKNAFMKNAQ 132 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKn 132 (175)
.|..++|++|++|+.+.+
T Consensus 58 ~RNriKR~lRe~~r~~~~ 75 (113)
T d1a6fa_ 58 MRNRIKRLIRQAFLEEKE 75 (113)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 355555666666655543
No 4
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=34.16 E-value=11 Score=25.08 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHhhcC
Q psy15834 115 GFDYFRLRLKNAFMKNAQ 132 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKn 132 (175)
.|..++|++|++|+.+.+
T Consensus 51 ~RNriKR~lRe~~r~~~~ 68 (109)
T d1nz0a_ 51 RRNKLKRWVREIFRRNKG 68 (109)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666666666544
No 5
>d1f3ka_ g.3.6.1 (A:) Conotoxin {Conus textile, Tx VII [TaxId: 6494]}
Probab=30.93 E-value=8.9 Score=21.16 Aligned_cols=20 Identities=35% Similarity=0.788 Sum_probs=17.1
Q ss_pred CCCCCCcccchhhhccccch
Q psy15834 62 NSCNLPSTACCTILSTGASM 81 (175)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~ 81 (175)
.+|..-|-.|||-+..|.-|
T Consensus 6 epcdvfsldcctgiclgvcm 25 (26)
T d1f3ka_ 6 EPCDVFSLDCCTGICLGVCM 25 (26)
T ss_dssp CCCCSSSCCSTTSCCSSSCC
T ss_pred CCccEEEEecccceEEEEEe
Confidence 58999999999988888765
No 6
>d1pu1a_ d.266.1.1 (A:) Hypothetical protein MTH677 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.08 E-value=13 Score=25.53 Aligned_cols=17 Identities=47% Similarity=0.813 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhHhhhh
Q psy15834 35 TAINQFLHNKILNFIVM 51 (175)
Q Consensus 35 ~~~~~~~~~~~~~~~~~ 51 (175)
..|..||||.|-.||.-
T Consensus 12 deissflhntisdfilk 28 (91)
T d1pu1a_ 12 DEISSFLHNTISDFILK 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 46899999999999964
No 7
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.18 E-value=19 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=23.7
Q ss_pred HHHHHccHHHHHHHHHHHHhhh----hHHHHhhhhhhh
Q psy15834 140 DQMIKHGEFVVKEIQALYMLKK----YRTLKQRLVLII 173 (175)
Q Consensus 140 kkaI~eGEyVvKEleALY~LkK----YR~LKrRYy~~~ 173 (175)
++.|++|..+.+|++.+..=.+ -..+-.|||+.|
T Consensus 42 k~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlI 79 (134)
T d1gs0a1 42 VAQIKAGYQSLKKIEDCIRAGQHGRALVEACNEFYTRI 79 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHhc
Confidence 4566677777777777765433 445788999887
No 8
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=25.69 E-value=18 Score=24.24 Aligned_cols=19 Identities=5% Similarity=0.044 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHhhcCC
Q psy15834 115 GFDYFRLRLKNAFMKNAQV 133 (175)
Q Consensus 115 gReYFRRRiR~aFRkNKnL 133 (175)
.|..++|++|++|+.+.+.
T Consensus 58 ~RNriKR~lRe~~R~~~~~ 76 (117)
T d1d6ta_ 58 LRNKIKRAIRENFKVHKSH 76 (117)
T ss_dssp HHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 6899999999999988653
No 9
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.72 E-value=46 Score=21.92 Aligned_cols=37 Identities=14% Similarity=0.416 Sum_probs=28.8
Q ss_pred hcCCC-chHHHHHHHHHHHHhhcCCCCHHHHHHHHHcc
Q psy15834 110 KDYPK-GFDYFRLRLKNAFMKNAQVQDPEKIDQMIKHG 146 (175)
Q Consensus 110 RdfPn-gReYFRRRiR~aFRkNKnLTDPeeIkkaI~eG 146 (175)
-||.. ..--|..|+.+.|+....-..|+++++++++-
T Consensus 4 ~dYse~tFte~kkkL~e~lr~k~P~as~~~l~~mVekr 41 (69)
T d1kxpd3 4 ADYSENTFTEYKKKLAERLKAKLPDATPKELAKLVNKR 41 (69)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 35662 22337788999999999999999999998764
No 10
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.94 E-value=41 Score=23.63 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHccHHHHHHHHHHHHh----hhhHHHHhhhhhhh
Q psy15834 140 DQMIKHGEFVVKEIQALYML----KKYRTLKQRLVLII 173 (175)
Q Consensus 140 kkaI~eGEyVvKEleALY~L----kKYR~LKrRYy~~~ 173 (175)
++.|++|..+.+|++.+..= .+-..+-.|||+.|
T Consensus 42 k~qI~~a~~iL~ei~~~l~~~~~~~~l~~lsn~fYtlI 79 (135)
T d1efya1 42 KRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLI 79 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHhhHHhC
Confidence 45566666677777766532 34456788999887
Done!