RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15834
(175 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.005
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 27/132 (20%)
Query: 4 RSKVV-----ELYKTVSMSL-----PDGDYQLGFPMSDMKTTAINQFL------HNKILN 47
++ VV LY ++++L P G Q P S+ K N+FL H+ +L
Sbjct: 375 KNLVVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 48 FIV-MTQQGLWVN--SFNSCNL--P--STACCTILSTGASMVGK---HWILGLLRYWENP 97
+ + L N SFN+ ++ P T + L + + + I+ L WE
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 98 TMLSTKVFLHLG 109
T L G
Sbjct: 494 TQFKATHILDFG 505
Score = 30.4 bits (68), Expect = 0.31
Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 51/155 (32%)
Query: 17 SLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTILS 76
+ PD DY L P+S I + Q +V + + L
Sbjct: 224 NTPDKDYLLSIPIS---------------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 77 TGASMVGKHWILGLL----RYWENPTMLSTKVFLHLGKDYPKGFDYFRLRLKNAFMKNAQ 132
GA+ + + + WE+ F + + F +
Sbjct: 269 -GATGHSQGLVTAVAIAETDSWES--------FFVSVRKA----------ITVLFFIGVR 309
Query: 133 VQD--------PEKIDQMIKHGEFVVKEIQALYML 159
+ P ++ +++ E V ML
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGV-----PSPML 339
Score = 28.9 bits (64), Expect = 0.93
Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 70/185 (37%)
Query: 5 SKVVELYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSC 64
+ EL G + LG+ S ++ + + QF +LN + F +
Sbjct: 55 TTPAELV---------GKF-LGYVSSLVEPSKVGQFDQ--VLNLCL--------TEFEN- 93
Query: 65 NLPSTACCTILSTGASMVGK--HWILGLLRYWENPTMLSTKVFLHLGKDYPKGFDYFRLR 122
L G H + L + T++ TK + +Y R
Sbjct: 94 --------CYLE------GNDIHALAAKLLQENDTTLVKTKELIK---------NYITAR 130
Query: 123 L----------KNAFMKNAQVQDPEKI-----DQMIKHG--EFVVKEIQALYMLKKYRTL 165
+ +A + + ++ Q G + +E++ LY + Y L
Sbjct: 131 IMAKRPFDKKSNSALFRAVG-EGNAQLVAIFGGQ----GNTDDYFEELRDLY--QTYHVL 183
Query: 166 KQRLV 170
L+
Sbjct: 184 VGDLI 188
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.076
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 54/169 (31%)
Query: 1 MTQRSKVVELYKTVSMSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNS 60
+ + S V + K ++S+P +L + + LH I+
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYA------LHRSIV-------------- 450
Query: 61 FNSCNLPSTACCTILSTGASMVGKHWILGLLRYWENPTMLSTKVFLHLG-----KDYPKG 115
+ N+P T L ++ Y+ + H+G ++P+
Sbjct: 451 -DHYNIPKTFDSDDLI-------PPYLDQ---YF----------YSHIGHHLKNIEHPER 489
Query: 116 FDYFRLRLKN-AFMKNAQVQDPEKIDQMIKHGEFVVKEIQALYMLKKYR 163
FR+ + F++ KI + L LK Y+
Sbjct: 490 MTLFRMVFLDFRFLEQ-------KIRHDSTAWNASGSILNTLQQLKFYK 531
Score = 28.3 bits (62), Expect = 1.7
Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 46/173 (26%)
Query: 17 SLPDGDYQLGFPMSDMKTTAINQFLHNKILN--FIVMTQQGLW----VNSFN-SCN-LPS 68
S D + + ++ + + L +K +V+ + N+FN SC L +
Sbjct: 215 SRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLT 271
Query: 69 TACCTILSTGASMVGKHWIL-------------GLLRYW----------E----NPTMLS 101
T + ++ H L LL + E NP LS
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 102 TKVFLHLGKDYPKGFDYFRL----RLKNAFMKNAQVQDPEKIDQMIKHGEFVV 150
+ +D +D ++ +L + V +P + +M V
Sbjct: 332 --IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RLSV 380
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 29.5 bits (67), Expect = 0.35
Identities = 4/36 (11%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 135 DPEKIDQMIKHGEFV-VKEIQALYMLKKYRTLKQRL 169
+ +++ +F + + AL++++++ + R+
Sbjct: 153 PLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV 188
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 29.1 bits (64), Expect = 0.73
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 76 STGASMVGKHWILGLLRYWENPTMLSTKVFLHLGKDY------PKGFDYFRLRLKNAFMK 129
S G+ +G+ W L L E +S L + K Y K F L +++
Sbjct: 160 SDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQ 219
Query: 130 NAQVQDPEKID 140
+ PE ++
Sbjct: 220 TFEGHVPELVN 230
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen
channel, FAD, flavoprotein, oxidoreductase; HET: FAD
SUC; 1.54A {Chromobacterium SP}
Length = 540
Score = 29.0 bits (64), Expect = 0.93
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 10/59 (16%)
Query: 83 GKHWILGLLRYWENPTMLSTKVFLHLGKDYPKG--FDYFRLRLKNAFMKNAQVQDPEKI 139
K W W + ML T + P +D + A+ DP ++
Sbjct: 479 SKGWGYTDQAAWADSAMLQTTIPNAFRAGQPAAANWDAAK-AALAAY-------DPYRL 529
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrol structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 27.6 bits (62), Expect = 1.9
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 135 DPEKIDQMIKHGEFV-VKEIQALYMLKKYRTLKQRLVL 171
++ ++ GE L+ + + LK+ +L
Sbjct: 147 PLTEVYALLAKGEIQDASTALTLFYAEPH--LKRLGLL 182
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer,
domain swapping, phosphate-binding, coiled coil,
exocytosis; 2.00A {Saccharomyces cerevisiae}
Length = 171
Score = 26.5 bits (58), Expect = 4.4
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 82 VGKHWILGLLRYWENPTMLSTKVFLHLGKDY------PKGFDYFRLRLKNAFMKNAQVQD 135
+G+ W L L E +S L + K Y K F L +++ +
Sbjct: 96 IGRTWQLTELVRVEKDLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHV 155
Query: 136 PE 137
PE
Sbjct: 156 PE 157
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication,
DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Length = 200
Score = 26.4 bits (57), Expect = 5.4
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 3/106 (2%)
Query: 16 MSLPDGDYQLGFPMSDMKTTAINQFLHNKILNFIVMTQQGLWVNSFNSCNLPSTACCTIL 75
+ + M D ++ I G +
Sbjct: 76 IRIQADQTPEDLDMEDNDIIEAHREQIGGGGETIKFVADGDIGSGSVIIKPFVDMEHPET 135
Query: 76 STGASMVGKHWILGLLRYWEN---PTMLSTKVFLHLGKDYPKGFDY 118
S M + +Y + + LS +V + L + P F +
Sbjct: 136 SIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQF 181
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 25.9 bits (57), Expect = 6.3
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 136 PEKIDQMIKHGEFVVKEIQALYMLKKYRTL 165
PE ++Q+ F +E+Q LY + ++
Sbjct: 3 PEGLEQLEAQTNFTKRELQVLY--RGFKNE 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.416
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,653,737
Number of extensions: 142876
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 25
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.2 bits)