RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15834
         (175 letters)



>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein
           BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 157

 Score = 28.6 bits (63), Expect = 0.25
 Identities = 5/23 (21%), Positives = 12/23 (52%)

Query: 128 MKNAQVQDPEKIDQMIKHGEFVV 150
           MK   ++D ++I+ +I   +   
Sbjct: 1   MKTIVIEDKQRIESIILQADACF 23


>d1ys5a1 f.4.1.3 (A:2-156) Lipoprotein GNA1870 immunodominant domain
           {Neisseria meningitidis [TaxId: 487]}
          Length = 155

 Score = 25.3 bits (55), Expect = 3.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 132 QVQDPEKIDQMIKHGEFVVKEIQ 154
           Q+QD E   +M+   +F + +I 
Sbjct: 13  QIQDSEHSGKMVAKRQFRIGDIA 35


>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 300

 Score = 24.9 bits (53), Expect = 5.8
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 90  LLRYWENPTMLSTKVFLHLGKDYPK---GFDYFRLRLKNAFMK 129
           +   W  P  +     + LG +YP    G D  + RL  A  +
Sbjct: 251 IHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQ 293


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 658,721
Number of extensions: 29121
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 14
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)