BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15835
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VHN6|RM19_DROME 39S ribosomal protein L19, mitochondrial OS=Drosophila melanogaster
GN=mRpL19 PE=2 SV=1
Length = 306
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 68/86 (79%)
Query: 1 MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
+Y EFLPDP++++RN VREKLER DM+ RR ID+P F+VGS+L+VTS+D H KT +F
Sbjct: 65 VYPEFLPDPKVEWRNLVREKLERLDMLDRRKQIDLPEFYVGSVLAVTSSDPHAAGKTSRF 124
Query: 61 VGICIQKRYCGLRHEFVLRNVVDNLG 86
VGICI + CGLR F+LRNV+D+ G
Sbjct: 125 VGICINRDRCGLRARFILRNVIDHQG 150
>sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial OS=Caenorhabditis
elegans GN=Y119C1B.4 PE=3 SV=1
Length = 288
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 1 MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
+Y +FL P RN ++E+LER DM++RR IDIP F+VGSI++VTS+DK+ +K +F
Sbjct: 48 IYPDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRF 107
Query: 61 VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
VGICI++ GL H+F LRN ++N+G V D + P + + L L+ ++
Sbjct: 108 VGICIRREKEGLLHQFTLRNTIENIG-VEVVYDLYNPTIKKIETLKLEKRL 157
>sp|Q2HJI0|RM19_BOVIN 39S ribosomal protein L19, mitochondrial OS=Bos taurus GN=MRPL19
PE=1 SV=1
Length = 292
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%)
Query: 15 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRH 74
N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD + KT +F+GICIQ+ GL
Sbjct: 88 NPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYANGKTSQFLGICIQRSGKGLGA 147
Query: 75 EFVLRNVVDNLGAVPC 90
F+LRN ++ G C
Sbjct: 148 TFILRNTIEGQGVEIC 163
>sp|Q5R8M4|RM19_PONAB 39S ribosomal protein L19, mitochondrial OS=Pongo abelii GN=MRPL19
PE=2 SV=1
Length = 292
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 12/92 (13%)
Query: 4 EFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR 58
EF+P DP LKF ++ER DM++RR V+ IP F+VGSIL VT+AD + K
Sbjct: 79 EFIPPRGRTDP-LKF------QMERKDMLERRKVLHIPEFYVGSILRVTTADPYASGKIS 131
Query: 59 KFVGICIQKRYCGLRHEFVLRNVVDNLGAVPC 90
+F+GICIQ+ GL F+LRNV++ G C
Sbjct: 132 QFLGICIQRSGRGLGATFILRNVIEGQGVEIC 163
>sp|P49406|RM19_HUMAN 39S ribosomal protein L19, mitochondrial OS=Homo sapiens GN=MRPL19
PE=1 SV=2
Length = 292
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 12/92 (13%)
Query: 4 EFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR 58
EF+P DP LKF ++ER DM++RR V+ IP F+VGSIL VT+AD + K
Sbjct: 79 EFIPRRGRTDP-LKF------QIERKDMLERRKVLHIPEFYVGSILRVTTADPYASGKIS 131
Query: 59 KFVGICIQKRYCGLRHEFVLRNVVDNLGAVPC 90
+F+GICIQ+ GL F+LRNV++ G C
Sbjct: 132 QFLGICIQRSGRGLGATFILRNVIEGQGVEIC 163
>sp|Q9D338|RM19_MOUSE 39S ribosomal protein L19, mitochondrial OS=Mus musculus GN=Mrpl19
PE=2 SV=1
Length = 292
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 15 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRH 74
N ++ K+ER DM+ RR V+ IP F+VGSIL VT+AD + KT +F+GICI++ GL
Sbjct: 88 NPLKFKIERKDMLDRRKVLPIPEFYVGSILRVTTADPYASGKTSQFLGICIKRSGNGLGA 147
Query: 75 EFVLRNVVDNLGAVPC 90
F LRN ++ G C
Sbjct: 148 TFTLRNTIEGQGVEIC 163
>sp|Q74FG1|RL19_GEOSL 50S ribosomal protein L19 OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=rplS PE=3 SV=1
Length = 118
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 34 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLG 86
+IP F G L V + D ++ + F G+CI ++ G+R F +R + +N+G
Sbjct: 15 NIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTVRKISNNIG 68
>sp|A7ZDX6|RL19_CAMC1 50S ribosomal protein L19 OS=Campylobacter concisus (strain
13826) GN=rplS PE=3 SV=1
Length = 118
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCG 71
RN+ E E + + + +IP F G L V + H+ +KTR F GICI +R G
Sbjct: 2 RNKYIEAFENAQIAGK----NIPDFRAGDTLRVATRI-HEGDKTRIQNFEGICIARRGSG 56
Query: 72 LRHEFVLRNVVDN 84
F++R + N
Sbjct: 57 TGETFIIRKIGAN 69
>sp|A7GZB0|RL19_CAMC5 50S ribosomal protein L19 OS=Campylobacter curvus (strain 525.92)
GN=rplS PE=3 SV=1
Length = 118
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 35 IPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDN 84
+P F G L V + H+ +KTR F GICI +R G+ F++R + N
Sbjct: 19 VPDFRAGDTLRV-AIRIHEGDKTRVQNFEGICIARRGSGVGETFIIRKIGAN 69
>sp|C6E5I6|RL19_GEOSM 50S ribosomal protein L19 OS=Geobacter sp. (strain M21) GN=rplS
PE=3 SV=1
Length = 118
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 15 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 73
NQ+ + +E + M K +IP F G + V + D ++ + F G+C+ ++ G+R
Sbjct: 2 NQI-DAIEMAQMKK-----NIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIR 55
Query: 74 HEFVLRNVVDNLG 86
F +R + + +G
Sbjct: 56 ESFTVRKISNGVG 68
>sp|B5EBC7|RL19_GEOBB 50S ribosomal protein L19 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rplS PE=3 SV=1
Length = 118
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 15 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 73
NQ+ + +E + M K +IP F G + V + D ++ + F G+C+ ++ G+R
Sbjct: 2 NQI-DAIEMAQMKK-----NIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIR 55
Query: 74 HEFVLRNVVDNLG 86
F +R + + +G
Sbjct: 56 ESFTVRKISNGVG 68
>sp|A7NM84|RL19_ROSCS 50S ribosomal protein L19 OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=rplS PE=3 SV=1
Length = 116
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 15 NQVREKLERSDMIKRRSVIDIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLR 73
Q+ E++ER M + D+P F VG ++ + + + ++F G+ I+KR GL
Sbjct: 3 QQIIEEIERRYMKQ-----DVPEFRVGDTVRVGVRVVEGNRERVQEFEGVVIRKRGSGLN 57
Query: 74 HEFVLRNVVDNLGAVPCTGDRHGPYLS 100
F +R + + V T H P +
Sbjct: 58 ENFTVRRIASHGIGVERTFLVHAPRVE 84
>sp|Q5FGP4|RL19_EHRRG 50S ribosomal protein L19 OS=Ehrlichia ruminantium (strain
Gardel) GN=rplS PE=3 SV=2
Length = 125
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 34 DIPSFFVGSILSVTSADKHDP-NKTRKFVGICIQKRYCGLRHEFVLRNVVDN 84
+IP F G L VT + + F G+CI+KR GL F LR + N
Sbjct: 20 EIPKFKSGDTLRVTMKIFDSAGERIQTFEGVCIKKRNNGLHSSFTLRKISYN 71
>sp|A5UWZ9|RL19_ROSS1 50S ribosomal protein L19 OS=Roseiflexus sp. (strain RS-1) GN=rplS
PE=3 SV=1
Length = 116
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 15 NQVREKLERSDMIKRRSVIDIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLR 73
Q+ E++ER M + D+P F VG ++ + + + ++F G+ I+KR GL
Sbjct: 3 QQIIEEIERRYMKQ-----DVPEFDVGDTVRVGVRVVEGNRERVQEFEGVVIRKRGSGLN 57
Query: 74 HEFVLRNVVDNLGAVPCTGDRHGPYLS 100
F +R + + V T H P +
Sbjct: 58 QNFTVRRIASHGIGVERTFLVHAPRVE 84
>sp|Q2VZV5|RL19_MAGSA 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1
Length = 148
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 19 EKLERSDMIKRRSVIDIPSFFVGSILSVT-SADKHDPNKTRKFVGICIQKRYCGLRHEFV 77
E+LE+ + K + +PSF G L V + + + + + G+CI ++ GL FV
Sbjct: 6 EQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFV 65
Query: 78 LRNV 81
+R +
Sbjct: 66 VRKI 69
>sp|A0RPR5|RL19_CAMFF 50S ribosomal protein L19 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=rplS PE=3 SV=1
Length = 118
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 34 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN 84
+P F G L + K D + + F GICI +R G F++R + N
Sbjct: 18 SVPDFRAGDTLRIAIRIKEGDKTRVQNFEGICIARRGSGSGETFIIRKIGAN 69
>sp|D0PRN3|NRX3A_CHICK Neurexin-3 OS=Gallus gallus PE=1 SV=1
Length = 1693
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 11 LKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQK--R 68
L+F N +E M ++R + IPS F+G + S+ ++ +C
Sbjct: 827 LEFHN-----IETGIMTEKRYISVIPSSFIGHLQSLMF-------NGMLYIDLCKNGDID 874
Query: 69 YCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSL 101
YC L+ F LRN++ A P T YLSL
Sbjct: 875 YCELKARFGLRNII----ADPVTFKTKSSYLSL 903
>sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4
Length = 1643
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 11 LKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQK--R 68
L+F N +E M ++R + +PS F+G + S+ ++ +C
Sbjct: 808 LEFHN-----IETGIMTEKRYISVVPSSFIGHLQSLMF-------NGLLYIDLCKNGDID 855
Query: 69 YCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSL 101
YC L+ F LRN++ A P T YLSL
Sbjct: 856 YCELKARFGLRNII----ADPVTFKTKSSYLSL 884
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,954,581
Number of Sequences: 539616
Number of extensions: 1582012
Number of successful extensions: 2892
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2883
Number of HSP's gapped (non-prelim): 22
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)