Query psy15835
Match_columns 116
No_of_seqs 102 out of 1032
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:36:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_P 50S ribosomal protein L 100.0 1.3E-36 4.6E-41 218.3 10.4 86 16-107 2-88 (114)
2 3v2d_T 50S ribosomal protein L 100.0 8.7E-36 3E-40 221.5 12.6 88 14-107 3-91 (146)
3 2zjr_M 50S ribosomal protein L 100.0 8.9E-37 3E-41 230.8 6.4 93 14-108 4-97 (166)
4 2ftc_K 39S ribosomal protein L 100.0 1E-33 3.4E-38 198.8 10.7 73 35-108 1-73 (98)
5 3bbo_R Ribosomal protein L19; 100.0 3.3E-34 1.1E-38 225.6 -8.9 94 14-108 119-212 (233)
6 2zzd_A Thiocyanate hydrolase s 82.1 0.43 1.5E-05 34.3 1.1 61 9-69 8-72 (126)
7 4fm4_B NitrIle hydratase beta 74.5 0.96 3.3E-05 34.6 1.0 34 36-69 117-154 (206)
8 1ugp_B NitrIle hydratase beta 62.4 2.4 8.2E-05 32.8 1.0 36 34-69 135-174 (226)
9 1jb7_A Telomere-binding protei 61.5 6.1 0.00021 33.5 3.5 43 33-81 108-151 (495)
10 3qyh_B CO-type nitrIle hydrata 60.8 2.5 8.6E-05 32.6 0.9 55 14-69 108-166 (219)
11 1vq8_K 50S ribosomal protein L 60.6 14 0.00047 26.5 4.7 37 32-68 41-77 (132)
12 3hht_B NitrIle hydratase beta 59.8 2.7 9.4E-05 32.6 0.9 36 34-69 138-177 (229)
13 3d6x_A (3R)-hydroxymyristoyl-[ 57.4 7.9 0.00027 26.1 2.9 28 38-65 101-128 (146)
14 3j21_J 50S ribosomal protein L 56.9 21 0.0007 25.9 5.1 37 33-69 51-87 (141)
15 4a53_A EDC3; RNA binding prote 55.6 18 0.00063 25.8 4.6 55 40-110 11-67 (125)
16 3p8d_A Medulloblastoma antigen 55.5 16 0.00056 23.2 3.9 45 35-91 4-48 (67)
17 2gll_A FABZ, (3R)-hydroxymyris 55.4 11 0.00037 26.8 3.5 28 38-65 125-152 (171)
18 1qzg_A Protection of telomeres 55.3 12 0.00041 28.1 3.8 44 32-83 94-138 (187)
19 4h4g_A (3R)-hydroxymyristoyl-[ 55.0 8.7 0.0003 27.3 2.9 27 38-64 111-137 (160)
20 3cnr_A Type IV fimbriae assemb 53.6 45 0.0015 22.8 6.3 46 37-88 41-86 (117)
21 1zq1_A Glutamyl-tRNA(Gln) amid 52.4 21 0.00071 29.9 5.2 60 38-108 12-73 (438)
22 2d6f_A Glutamyl-tRNA(Gln) amid 49.6 19 0.00066 30.0 4.5 44 38-89 16-61 (435)
23 2rm4_A CG6311-PB, DM EDC3; enh 48.7 63 0.0022 22.2 6.9 58 39-108 10-73 (103)
24 3db3_A E3 ubiquitin-protein li 48.2 78 0.0027 23.4 7.2 37 37-73 92-128 (161)
25 3a8g_B NitrIle hydratase subun 46.8 5.5 0.00019 30.5 0.7 36 34-69 119-159 (212)
26 2kbn_A Conserved protein; nucl 46.0 19 0.00064 24.0 3.3 26 34-59 57-83 (109)
27 4b3f_X DNA-binding protein smu 45.7 40 0.0014 28.3 6.0 34 34-70 75-110 (646)
28 2vc8_A Enhancer of mRNA-decapp 45.6 64 0.0022 21.5 7.8 60 39-108 7-70 (84)
29 2eif_A IF-5A, protein (eukaryo 45.0 46 0.0016 23.2 5.3 47 34-91 12-64 (136)
30 1u1z_A (3R)-hydroxymyristoyl-[ 42.9 34 0.0012 23.9 4.4 27 38-64 121-147 (168)
31 4he6_A Peptidase family U32; u 42.6 14 0.00048 23.5 2.1 36 56-91 4-40 (89)
32 4i83_A 3-hydroxyacyl-[acyl-car 40.7 20 0.0007 24.7 2.9 28 38-65 107-134 (152)
33 2e6z_A Transcription elongatio 39.6 14 0.00047 22.4 1.6 28 36-69 6-33 (59)
34 2f41_A Transcription factor FA 37.6 47 0.0016 21.5 4.2 26 38-63 73-100 (121)
35 3u5e_V L17A, YL32, 60S ribosom 37.2 19 0.00065 25.9 2.3 36 34-69 48-83 (137)
36 1z6b_A Pffabz, fatty acid synt 35.6 22 0.00075 24.2 2.4 28 37-64 106-135 (154)
37 3e0e_A Replication protein A; 34.3 43 0.0015 21.6 3.5 24 37-60 63-86 (97)
38 1y96_A Gemin6, SIP2, GEM-assoc 34.0 1E+02 0.0034 20.3 6.3 63 40-112 16-78 (86)
39 1xjv_A Protection of telomeres 31.7 30 0.001 26.6 2.8 16 33-48 62-78 (294)
40 3bnv_A CJ0977; virulence facto 31.5 80 0.0027 21.6 4.8 26 38-63 100-126 (152)
41 3bbo_M Ribosomal protein L14; 31.0 68 0.0023 22.4 4.3 31 38-68 33-66 (121)
42 2im9_A Hypothetical protein; s 30.9 2.1E+02 0.0073 23.1 8.0 71 36-111 239-321 (333)
43 3qii_A PHD finger protein 20; 30.2 67 0.0023 21.3 3.9 45 35-91 19-63 (85)
44 2nsc_A Trigger factor, TF; cha 30.1 44 0.0015 22.1 3.1 20 23-42 29-48 (109)
45 1bkb_A Translation initiation 29.6 1.1E+02 0.0037 21.1 5.2 51 35-93 11-63 (136)
46 2p26_A Integrin beta-2; hybrid 28.4 67 0.0023 25.1 4.3 38 37-91 84-121 (280)
47 3coo_A Spondin-1; reelin-N dom 28.1 1.7E+02 0.006 21.3 7.0 68 37-110 49-129 (180)
48 3r8s_K 50S ribosomal protein L 28.1 84 0.0029 22.0 4.4 33 37-69 32-67 (122)
49 3p8b_B Transcription antitermi 28.0 61 0.0021 22.4 3.6 51 35-91 89-139 (152)
50 3cdd_A Prophage MUSO2, 43 kDa 27.7 1E+02 0.0035 23.8 5.3 36 37-78 56-91 (361)
51 2fhd_A RAD9 homolog, DNA repai 27.6 26 0.00089 25.8 1.7 11 37-47 63-73 (153)
52 2f3x_A Transcription factor FA 26.8 68 0.0023 22.3 3.7 27 38-64 109-137 (157)
53 2k52_A Uncharacterized protein 26.6 61 0.0021 19.8 3.1 21 37-57 45-66 (80)
54 3h8z_A FragIle X mental retard 26.6 85 0.0029 22.0 4.2 33 36-69 59-91 (128)
55 2fpe_A C-JUN-amino-terminal ki 26.5 52 0.0018 18.8 2.6 13 37-49 21-33 (62)
56 3esi_A Uncharacterized protein 26.4 55 0.0019 22.7 3.2 18 38-55 78-95 (129)
57 1wi5_A RRP5 protein homolog; S 26.3 88 0.003 20.6 4.1 16 37-52 67-82 (119)
58 1nz9_A Transcription antitermi 26.2 27 0.00094 20.5 1.3 28 37-70 4-31 (58)
59 1whi_A Ribosomal protein L14; 26.0 91 0.0031 21.8 4.2 31 38-68 33-66 (122)
60 2qcp_X Cation efflux system pr 25.7 52 0.0018 20.9 2.7 20 33-52 49-68 (80)
61 2vb2_X Copper protein, cation 25.5 51 0.0018 21.4 2.7 20 33-52 57-76 (88)
62 4ayb_E DNA-directed RNA polyme 25.4 64 0.0022 22.7 3.4 15 37-51 135-149 (180)
63 1zuy_A Myosin-5 isoform; SH3 d 25.4 57 0.0019 18.2 2.6 14 37-50 19-32 (58)
64 3k67_A Putative dehydratase AF 25.1 52 0.0018 23.1 2.9 15 38-52 116-130 (159)
65 3mjj_A Predicted acetamidase/f 24.4 69 0.0024 25.5 3.7 30 38-72 71-100 (301)
66 3v2d_O 50S ribosomal protein L 24.3 95 0.0033 21.7 4.1 33 37-69 32-67 (122)
67 2b3n_A Hypothetical protein AF 24.2 68 0.0023 22.2 3.3 15 38-52 116-130 (159)
68 1p9y_A Trigger factor, TF; alp 24.2 64 0.0022 21.7 3.1 19 23-41 32-50 (121)
69 2g6f_X RHO guanine nucleotide 24.2 61 0.0021 18.3 2.6 14 37-50 22-35 (59)
70 3i4o_A Translation initiation 23.9 1.1E+02 0.0037 19.7 4.0 24 38-67 54-77 (79)
71 2lkn_A AH receptor-interacting 23.8 43 0.0015 24.2 2.2 18 33-50 22-39 (165)
72 2eyx_A V-CRK sarcoma virus CT1 23.7 47 0.0016 19.5 2.1 14 37-50 26-39 (67)
73 1zx6_A YPR154WP; SH3 domain, p 23.7 63 0.0022 18.2 2.6 14 37-50 20-33 (58)
74 1k4u_S Phagocyte NADPH oxidase 23.6 59 0.002 18.6 2.5 14 37-50 23-36 (62)
75 1g5v_A SurviVal motor neuron p 23.6 1.5E+02 0.0051 19.2 4.7 48 31-85 4-51 (88)
76 2a28_A BZZ1 protein; SH3 domai 23.6 45 0.0015 18.5 1.9 14 37-50 18-31 (54)
77 1gcq_C VAV proto-oncogene; SH3 23.4 44 0.0015 19.6 1.9 13 37-49 28-40 (70)
78 1yn8_A NBP2, NAP1-binding prot 23.3 69 0.0024 17.9 2.7 14 37-50 19-32 (59)
79 2bz8_A SH3-domain kinase bindi 23.0 46 0.0016 18.8 1.9 14 37-50 19-32 (58)
80 1w70_A Neutrophil cytosol fact 22.8 67 0.0023 18.3 2.6 14 37-50 22-35 (60)
81 1jo8_A ABP1P, actin binding pr 22.7 47 0.0016 18.7 1.9 13 37-49 18-30 (58)
82 2lj0_A Sorbin and SH3 domain-c 22.7 65 0.0022 19.3 2.6 14 37-50 24-37 (65)
83 1tg0_A BBC1 protein, myosin ta 22.6 66 0.0023 18.8 2.6 14 37-50 25-38 (68)
84 2gnc_A SLIT-ROBO RHO GTPase-ac 22.4 73 0.0025 18.1 2.7 14 37-50 24-37 (60)
85 1cka_A C-CRK N-terminal SH3 do 22.3 49 0.0017 18.5 1.9 13 37-49 19-31 (57)
86 1uti_A GRB2-related adaptor pr 22.2 49 0.0017 18.6 1.9 13 37-49 19-31 (58)
87 3d37_A Tail protein, 43 kDa; s 22.1 1.3E+02 0.0045 23.6 5.0 37 37-79 52-90 (381)
88 3iuw_A Activating signal coint 21.9 1.7E+02 0.0059 19.0 5.1 14 37-50 37-50 (83)
89 1sem_A SEM-5; SRC-homology 3 ( 21.9 51 0.0017 18.5 1.9 13 37-49 20-32 (58)
90 2d3o_1 Trigger factor, TF; rib 21.8 54 0.0018 21.7 2.3 18 25-42 30-47 (112)
91 2do3_A Transcription elongatio 21.8 40 0.0014 21.5 1.5 28 37-70 17-44 (69)
92 1wru_A 43 kDa tail protein; ba 21.5 1.4E+02 0.0047 23.4 5.0 38 37-80 47-86 (379)
93 3rnj_A Brain-specific angiogen 21.5 45 0.0015 19.4 1.7 11 37-47 26-36 (67)
94 2l74_A Putative uncharacterize 21.5 1.9E+02 0.0064 19.8 5.2 39 37-77 70-108 (145)
95 2bzy_A CRK-like protein, CRKL 21.4 72 0.0025 18.6 2.6 14 37-50 21-34 (67)
96 1iq6_A (R)-hydratase, (R)-spec 21.3 1.3E+02 0.0045 19.0 4.1 15 38-52 88-102 (134)
97 2bm3_A Type 2 cohesin, scaffol 21.2 1.1E+02 0.0038 22.7 4.0 28 37-68 17-44 (166)
98 1y0m_A 1-phosphatidylinositol- 21.2 53 0.0018 18.7 1.9 14 37-50 21-34 (61)
99 3d6l_A Putative hydrolase; hot 21.1 1.3E+02 0.0045 19.1 4.1 25 38-62 63-87 (137)
100 2xmf_A Myosin 1E SH3; motor pr 21.1 76 0.0026 17.9 2.6 14 37-50 23-36 (60)
101 2fpf_A C-JUN-amino-terminal ki 21.0 74 0.0025 18.7 2.6 13 37-49 24-36 (71)
102 1zlm_A Osteoclast stimulating 20.9 54 0.0019 18.5 1.9 13 37-49 21-33 (58)
103 1ywu_A Hypothetical protein PA 20.9 2.1E+02 0.0071 19.6 5.5 39 37-77 72-110 (149)
104 2lcs_A NAP1-binding protein 2; 20.9 86 0.0029 18.8 2.9 14 37-50 23-36 (73)
105 1ixl_A Hypothetical protein PH 20.8 73 0.0025 20.4 2.8 25 39-63 82-106 (131)
106 2v1q_A SLA1, cytoskeleton asse 20.8 55 0.0019 18.4 1.9 13 37-49 20-32 (60)
107 2zou_A Spondin-1; beta-sandwic 20.6 2.2E+02 0.0075 19.7 8.9 68 37-110 34-114 (149)
108 1k1z_A VAV; SH3, proto-oncogen 20.6 53 0.0018 19.7 1.9 13 37-49 36-48 (78)
109 2j6f_A CD2-associated protein; 20.4 56 0.0019 18.7 1.9 13 37-49 19-31 (62)
110 1g2b_A Spectrin alpha chain; c 20.4 60 0.002 18.7 2.0 14 37-50 39-52 (62)
111 2jte_A CD2-associated protein; 20.3 56 0.0019 18.7 1.9 14 37-50 24-37 (64)
112 2nn6_I 3'-5' exoribonuclease C 20.2 99 0.0034 22.9 3.7 34 38-71 136-175 (209)
113 1uj0_A Signal transducing adap 20.2 56 0.0019 18.7 1.9 13 37-49 23-35 (62)
114 2o9s_A Ponsin; SH3 domain, sig 20.2 80 0.0027 18.3 2.6 14 37-50 24-37 (67)
115 2j05_A RAS GTPase-activating p 20.1 81 0.0028 18.2 2.6 14 37-50 24-37 (65)
116 2drm_A Acanthamoeba myosin IB; 20.1 58 0.002 18.2 1.9 14 37-50 21-34 (58)
117 2vwf_A Growth factor receptor- 20.0 58 0.002 18.2 1.9 13 37-49 20-32 (58)
No 1
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=100.00 E-value=1.3e-36 Score=218.31 Aligned_cols=86 Identities=23% Similarity=0.386 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEccc
Q psy15835 16 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDR 94 (116)
Q Consensus 16 ~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~pl 94 (116)
++|+.+|++|| +.++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| |+
T Consensus 2 ~~i~~~e~~~~-----~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~f-pl 75 (114)
T 3r8s_P 2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVF-QT 75 (114)
T ss_dssp CHHHHHHGGGC-----CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEE-ET
T ss_pred hHHHHHHHHHh-----ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEE-ec
Confidence 58999999999 569999999999999999997 789999999999999999999999999999999999999 99
Q ss_pred cCCCcceEEEeec
Q psy15835 95 HGPYLSLLGALGL 107 (116)
Q Consensus 95 ~SP~I~~IeVl~~ 107 (116)
|||.|++|||+++
T Consensus 76 ~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 76 HSPVVDSISVKRR 88 (114)
T ss_dssp TCTTEEEEEEEEC
T ss_pred CCCccceEEEEEc
Confidence 9999999999986
No 2
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=100.00 E-value=8.7e-36 Score=221.52 Aligned_cols=88 Identities=23% Similarity=0.370 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEc
Q psy15835 14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTG 92 (116)
Q Consensus 14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~ 92 (116)
|++||+.+|.++| +.++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++|
T Consensus 3 ~~~li~~ie~~~~-----~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~F- 76 (146)
T 3v2d_T 3 RGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIF- 76 (146)
T ss_dssp HHHHHHHHHHTTC-----CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEE-
T ss_pred HHHHHHHHHHHHh-----hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEE-
Confidence 5789999999999 569999999999999999987 789999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEeec
Q psy15835 93 DRHGPYLSLLGALGL 107 (116)
Q Consensus 93 pl~SP~I~~IeVl~~ 107 (116)
|+|||.|++|||+++
T Consensus 77 pl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 77 PLHSPLIQKIDIVQR 91 (146)
T ss_dssp ETTCTTEEEEEEEEC
T ss_pred ecCCCccceEEEEec
Confidence 999999999999986
No 3
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=100.00 E-value=8.9e-37 Score=230.81 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEc
Q psy15835 14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTG 92 (116)
Q Consensus 14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~ 92 (116)
++++|+.||++||.+. ...++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++|
T Consensus 4 ~M~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~F- 81 (166)
T 2zjr_M 4 HIKINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVF- 81 (166)
T ss_dssp CCCCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEE-
T ss_pred HHHHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEE-
Confidence 4569999999999644 4679999999999999999987 789999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEeecC
Q psy15835 93 DRHGPYLSLLGALGLD 108 (116)
Q Consensus 93 pl~SP~I~~IeVl~~~ 108 (116)
|+|||.|++|||+++-
T Consensus 82 plhSP~I~kIEVvrrG 97 (166)
T 2zjr_M 82 PFASPLVNQVTIVERG 97 (166)
T ss_dssp ETTCTTEEEEEEEECC
T ss_pred ecCCCccceEEEEecc
Confidence 9999999999999873
No 4
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1e-33 Score=198.81 Aligned_cols=73 Identities=41% Similarity=0.720 Sum_probs=71.0
Q ss_pred CCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEccccCCCcceEEEeecC
Q psy15835 35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLD 108 (116)
Q Consensus 35 iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~pl~SP~I~~IeVl~~~ 108 (116)
+|+|++||||+|++++.++++|+|.|+|+||+++|+|+++||||||+++|+|||++| |+|||.|++|||+++.
T Consensus 1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~f-pl~SP~I~~IeV~r~g 73 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICF-ELYNPRVQEIQVVKLE 73 (98)
T ss_pred CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEE-ecCCCceeEEEEEEcC
Confidence 699999999999999999999999999999999999999999999999999999999 9999999999999864
No 5
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.97 E-value=3.3e-34 Score=225.55 Aligned_cols=94 Identities=12% Similarity=0.261 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEcc
Q psy15835 14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGD 93 (116)
Q Consensus 14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~p 93 (116)
..++|+.|+++++++...+.++|+|++||||+|++++.|+++|+|.|+|+||+++|+|+++||||||+++|+|||++| |
T Consensus 119 ~~~iM~~L~re~ie~~q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~F-p 197 (233)
T 3bbo_R 119 LGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVF-P 197 (233)
T ss_dssp --CCSSSCSTTHHHHTTCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCC-C
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEE-e
Confidence 446888888888888777889999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccCCCcceEEEeecC
Q psy15835 94 RHGPYLSLLGALGLD 108 (116)
Q Consensus 94 l~SP~I~~IeVl~~~ 108 (116)
+|||.|++|||+++-
T Consensus 198 LhSP~I~kIEVvRrg 212 (233)
T 3bbo_R 198 LYSPNIKEIKVVSHR 212 (233)
T ss_dssp CBSSSSSCCCCCCCS
T ss_pred cCCCccceEEEEecc
Confidence 999999999999863
No 6
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=82.15 E-value=0.43 Score=34.29 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=41.8
Q ss_pred ccchhhHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecCCCceeeeEE----EEEEEEec
Q psy15835 9 PELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFV----GICIQKRY 69 (116)
Q Consensus 9 ~~~~~~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e~k~r~q~F~----Gv~Ia~r~ 69 (116)
|+|.|-.+.+...-+-+=..|.....-|.|.+||.|+|.-....+-.|...|. |+|.+..+
T Consensus 8 ~~~~~~~~~~~a~~~G~p~~R~~~~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp CCCCSSHHHHHHTTTCTTGGGTTTTCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred cccccchhhhhhcccCCCcccCCCCCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEec
Confidence 56666666666655554444434445689999999999866666778887774 88877663
No 7
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=74.46 E-value=0.96 Score=34.56 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=27.7
Q ss_pred CCcCCCCEEEEEEEecCCCceeeeEE----EEEEEEec
Q psy15835 36 PSFFVGSILSVTSADKHDPNKTRKFV----GICIQKRY 69 (116)
Q Consensus 36 P~f~~GD~v~V~~~i~e~k~r~q~F~----Gv~Ia~r~ 69 (116)
|.|.+||.|+|.-....+-+|...|. |+|++.++
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISP 154 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECC
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEec
Confidence 56999999999876666778887774 99998875
No 8
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=62.36 E-value=2.4 Score=32.82 Aligned_cols=36 Identities=17% Similarity=0.409 Sum_probs=28.1
Q ss_pred CCCCcCCCCEEEEEEEecCCCceeeeEE----EEEEEEec
Q psy15835 34 DIPSFFVGSILSVTSADKHDPNKTRKFV----GICIQKRY 69 (116)
Q Consensus 34 ~iP~f~~GD~v~V~~~i~e~k~r~q~F~----Gv~Ia~r~ 69 (116)
.-|.|.+||.|+|.-....+-.|...|. |+|.+.++
T Consensus 135 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 135 RPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEec
Confidence 4678999999999866666778888774 88887663
No 9
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=61.51 E-value=6.1 Score=33.48 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=33.2
Q ss_pred CCCCCc-CCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeee
Q psy15835 33 IDIPSF-FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNV 81 (116)
Q Consensus 33 ~~iP~f-~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni 81 (116)
..+|.. .+||+|.++=.- +|.|.|-..+.-+.+.+++|-|=.-
T Consensus 108 e~LP~V~~~GDII~Lhrvk------Iq~~ng~~~~v~~~~~~SswavF~~ 151 (495)
T 1jb7_A 108 EDLPIIHRAGDIIRVHRAT------LRLYNGQRQFNANVFYSSSWALFST 151 (495)
T ss_dssp GGSCCCCEETCEEEEEEEE------EEEETTEEEEEEETTTTCEEEEECS
T ss_pred HHCCCCCCCCCEEEEEEEE------EEEECCcEEEEecCCCceEEEEEeC
Confidence 469998 799999997543 6788887777778887788876543
No 10
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=60.79 E-value=2.5 Score=32.56 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecCCCceeeeEE----EEEEEEec
Q psy15835 14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFV----GICIQKRY 69 (116)
Q Consensus 14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e~k~r~q~F~----Gv~Ia~r~ 69 (116)
..++...|.+-+=..| ....-|.|.+||.|+|.-....+-.|...|. |+|.+.++
T Consensus 108 ~~~v~~~l~~G~p~~r-~~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 108 PAIVDGLLSTGASAAR-EEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp GGGHHHHHHHCCCCBC-SCCSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEE
T ss_pred HHHHHHHHhcCCCccC-CCCCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEec
Confidence 3445555554322112 1234578999999999766666778887774 88877764
No 11
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=60.63 E-value=14 Score=26.48 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=29.2
Q ss_pred CCCCCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEe
Q psy15835 32 VIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKR 68 (116)
Q Consensus 32 ~~~iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r 68 (116)
...+|.-.+||+|.|+++......|.+.+.++++..+
T Consensus 41 ~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtk 77 (132)
T 1vq8_K 41 KNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQR 77 (132)
T ss_dssp TTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECS
T ss_pred ccccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcC
Confidence 3467889999999999986543337789999999865
No 12
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=59.80 E-value=2.7 Score=32.59 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=27.6
Q ss_pred CCCCcCCCCEEEEEEEecCCCceeeeEE----EEEEEEec
Q psy15835 34 DIPSFFVGSILSVTSADKHDPNKTRKFV----GICIQKRY 69 (116)
Q Consensus 34 ~iP~f~~GD~v~V~~~i~e~k~r~q~F~----Gv~Ia~r~ 69 (116)
.-|.|.+||.|+|.-....+-.|...|. |+|.+.++
T Consensus 138 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 138 ASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEec
Confidence 4578999999999766666778887774 88877763
No 13
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=57.42 E-value=7.9 Score=26.08 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=20.1
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEEE
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGICI 65 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~I 65 (116)
.+|||++.++..+.+.+.+.-.|.+.+.
T Consensus 101 V~pGd~l~~~~~v~~~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 101 VRPGDRLDYEMSVVKNRGNMWIFKGQAF 128 (146)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 5789999999988664445556666554
No 14
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.90 E-value=21 Score=25.87 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCCCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEec
Q psy15835 33 IDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRY 69 (116)
Q Consensus 33 ~~iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~ 69 (116)
..+|.-.+||+|.|.++...-..+-+.+.++|+..+.
T Consensus 51 ~r~~~A~iGD~IvvsVKk~~p~~kg~V~kAVIVRtkk 87 (141)
T 3j21_J 51 RRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRK 87 (141)
T ss_dssp TCCCCBCSSCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred cccccCCcCCEEEEEEEecCCCCcCceEEEEEEEeCC
Confidence 4578889999999999865433467899999998654
No 15
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=55.63 E-value=18 Score=25.79 Aligned_cols=55 Identities=18% Similarity=0.068 Sum_probs=42.8
Q ss_pred CCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEE--eeecCCeeeeEEEccccCCCcceEEEeecCCc
Q psy15835 40 VGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVL--RNVVDNLGAVPCTGDRHGPYLSLLGALGLDPK 110 (116)
Q Consensus 40 ~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtl--Rni~~gvGVEr~f~pl~SP~I~~IeVl~~~p~ 110 (116)
.|..|.|+.++ -..+.|++...-+.+ .|| +++..... .+-++.|+.++|+...++
T Consensus 11 lGy~V~v~LkD------gs~~qG~I~~vd~k~----LtL~~~~a~~s~~------~I~asdI~DLkVl~~~~~ 67 (125)
T 4a53_A 11 YGSNVEVLLNN------DSKARGVITNFDSSN----SILQLRLANDSTK------SIVTKDIKDLRILPKNEI 67 (125)
T ss_dssp TTCEEEEEETT------SCEEEEEEEEEETTT----TEEEEEETTTEEE------EEEGGGEEEEEECCSCCS
T ss_pred cCceEEEEECC------CCEeeEEEEeecCCe----eEEeccccccccc------eeecccccceeeeecccc
Confidence 68999999885 238899999987555 466 99855444 567899999999988775
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=55.48 E-value=16 Score=23.17 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=33.1
Q ss_pred CCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEE
Q psy15835 35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCT 91 (116)
Q Consensus 35 iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f 91 (116)
.|.|++||.|.-.+.+ -+-|.|.+.++.+.+ +++|+= .+ |...+-
T Consensus 4 ~~~~~vGd~vmArW~D------~~yYpA~I~si~~~~---~Y~V~F--~d-G~~etv 48 (67)
T 3p8d_A 4 SSEFQINEQVLACWSD------CRFYPAKVTAVNKDG---TYTVKF--YD-GVVQTV 48 (67)
T ss_dssp -CCCCTTCEEEEECTT------SCEEEEEEEEECTTS---EEEEEE--TT-SCEEEE
T ss_pred CcccccCCEEEEEcCC------CCEeeEEEEEECCCC---eEEEEE--eC-CceEEE
Confidence 5789999999999722 357889999999884 588764 34 655554
No 17
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=55.44 E-value=11 Score=26.81 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=21.3
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEEE
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGICI 65 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~I 65 (116)
.+|||+|.+++.+...+.+.-.|.|.+.
T Consensus 125 V~PGD~L~i~v~v~~~~~~~~~~~~~~~ 152 (171)
T 2gll_A 125 VTPGDRLEYHLEVLKHKGMIWQVGGTAQ 152 (171)
T ss_dssp CCTTCEEEEEEEEEEESSSEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 5799999999998765556667776654
No 18
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=55.34 E-value=12 Score=28.14 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCCCCCc-CCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecC
Q psy15835 32 VIDIPSF-FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVD 83 (116)
Q Consensus 32 ~~~iP~f-~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~ 83 (116)
...+|.. .+||+|.++-.- +|.|.|-+.+..+.+. +|.+=..+.
T Consensus 94 ~e~LP~V~~~GDIIlL~rvk------iq~~~g~~~~v~~~~~--s~a~f~~~~ 138 (187)
T 1qzg_A 94 GNDLPVIKQVGQPLLLHQIT------LRSYRDRTQGLSKDQF--RYALWPDFS 138 (187)
T ss_dssp SSCSCCCCSTTCEEEEEEEE------EEEETTEEEEEEEEEE--EEEECCCTT
T ss_pred hhhCCCCCCCCCEEEEEEEE------EEEECCeEEEEEcCce--eEEEEeccC
Confidence 4579998 999999998654 6777776666665552 455544433
No 19
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=55.02 E-value=8.7 Score=27.31 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=19.9
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEE
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGIC 64 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~ 64 (116)
..|||+|.+++.+...+.....|.|.+
T Consensus 111 V~PGd~L~i~v~~~~~~~~~~~~~~~~ 137 (160)
T 4h4g_A 111 VEPGDQLILNVTFERYIRGIWKFKAVA 137 (160)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 579999999998866555566666654
No 20
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=53.57 E-value=45 Score=22.82 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=31.2
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeee
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAV 88 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVE 88 (116)
.+.+||.|.+.+...+..++ -...|.|+-.+-.|-.. +--.|+||+
T Consensus 41 ~~~~G~~V~l~l~Lp~~~~~-i~~~GkVvWi~p~~~~~-----~~p~G~GVq 86 (117)
T 3cnr_A 41 RYMLGDEVFLLLTLPDSSER-LPVAGKVIWTTPAGAQG-----NRAAGIGVQ 86 (117)
T ss_dssp CCCTTCEEEEEEECTTCSCE-EEEEEEEEEEECC-----------CCEEEEE
T ss_pred ccCCCCEEEEEEEcCCCCce-EEEEEEEEEecCCCCCC-----CCCCceEEE
Confidence 36899999999999876543 45669999988766542 235778874
No 21
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=52.40 E-value=21 Score=29.86 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=36.1
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecC--CeeeeEEEccccCCCcceEEEeecC
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVD--NLGAVPCTGDRHGPYLSLLGALGLD 108 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~--gvGVEr~f~pl~SP~I~~IeVl~~~ 108 (116)
+.+||.|+|...... ....|+|+++-....+ +....+=|..+ ++|+.+- .+++|+++.+.
T Consensus 12 ~~~gd~v~~~~~~~~---~~~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~~-------~~~~~~~~~~~ 73 (438)
T 1zq1_A 12 INVGDFVRITKEEDG---EEVTYEGYIMPPYELS-AGDTLVLKLENGYNIGIALE-------KIRRIEVLERA 73 (438)
T ss_dssp CCTTCEEEEEEESSS---SEEECCEEECCCCTTC-CCSEEEEEETTSCEEEEEGG-------GEEEEEEEECC
T ss_pred CCCCCEEEEEECCCc---ceeEEEEEEecCcccC-CCCeEEEEccCCceeeechh-------hcceEEEeccC
Confidence 368999999875421 2468999999765544 33344444444 4565431 24556666644
No 22
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=49.56 E-value=19 Score=30.03 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=27.9
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCC--eeeeE
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN--LGAVP 89 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~g--vGVEr 89 (116)
+.+||.|+|.... ..|+|+++-....+ +....+=|..+| +|+.+
T Consensus 16 ~~~gd~~~~~~~~-------~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~ 61 (435)
T 2d6f_A 16 IDVGDMVLVEKPD-------VTYEGMVLDRADDA-DDRHIVLKLENGYNIGVEI 61 (435)
T ss_dssp CCTTCEEEEECSS-------CEEEEEECCCCTTS-CSSEEEEECTTSCEEEEEC
T ss_pred CCCCCEEEEEECC-------eEEEEEEecCcccC-CCCeEEEEccCceeeeecc
Confidence 3689999987433 79999999765544 333444444443 45543
No 23
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=48.74 E-value=63 Score=22.25 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeec-CCe-----eeeEEEccccCCCcceEEEeecC
Q psy15835 39 FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVV-DNL-----GAVPCTGDRHGPYLSLLGALGLD 108 (116)
Q Consensus 39 ~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~-~gv-----GVEr~f~pl~SP~I~~IeVl~~~ 108 (116)
..|..|+|+-... .-.|+|.+++.. .+++||++.+ +|+ -.|.+| -.=.|++++++...
T Consensus 10 wiG~~VSI~C~d~-----LGVyQG~I~~V~----~~~ItL~kaFrNGiplk~~~~EVtL---sa~DI~~L~IIe~~ 73 (103)
T 2rm4_A 10 WIGCAVSIACDEV-----LGVFQGLIKQIS----AEEITIVRAFRNGVPLRKQNAEVVL---KCTDIRSIDLIEPA 73 (103)
T ss_dssp GTTCEEEEEECTT-----TCEEEEEEEEEE----TTEEEEEEEEETTEECSCSSSCEEE---ETTTEEEEEEEECC
T ss_pred eeceEEEEeeCCc-----ceEeeEEEEEcc----cceeEEhhhhhcCcCcCCCCceEEE---Eecchhheeeeccc
Confidence 5799999886542 459999999998 4669999976 555 357777 23458888887643
No 24
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=48.15 E-value=78 Score=23.37 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=31.7
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCc
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLR 73 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~ 73 (116)
++.+|+.|.|.|...+-++|--=|-.-+.+++..-..
T Consensus 92 ~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~~~rT~ 128 (161)
T 3db3_A 92 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTA 128 (161)
T ss_dssp GCCTTCEEEEEECSSSTTSCCEEEEEEEEEEEECSSC
T ss_pred HCCcCcEEEEecCCCCccccceeEEEEEeeehhhhhh
Confidence 7999999999999999999999999988888754433
No 25
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=46.81 E-value=5.5 Score=30.54 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=27.2
Q ss_pred CCCCcCCCCEEEEEEEecCCCceeeeEE----EEE-EEEec
Q psy15835 34 DIPSFFVGSILSVTSADKHDPNKTRKFV----GIC-IQKRY 69 (116)
Q Consensus 34 ~iP~f~~GD~v~V~~~i~e~k~r~q~F~----Gv~-Ia~r~ 69 (116)
.-|.|.+||.|+|.-....+-.|.-.|. |+| ...++
T Consensus 119 ~~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g 159 (212)
T 3a8g_B 119 ETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTE 159 (212)
T ss_dssp CCCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSS
T ss_pred cCcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEecc
Confidence 3578999999999966666778887774 888 55554
No 26
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=46.01 E-value=19 Score=23.97 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=17.8
Q ss_pred CCCCcCCCCEEEEE-EEecCCCceeee
Q psy15835 34 DIPSFFVGSILSVT-SADKHDPNKTRK 59 (116)
Q Consensus 34 ~iP~f~~GD~v~V~-~~i~e~k~r~q~ 59 (116)
+.+.|.+||+|++. .++.+-+.+.|.
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~G~~~L 83 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYNDRFQV 83 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEETTEEEE
T ss_pred cccccCCCCEEEEEEEEEEEECCEEEE
Confidence 56789999999998 566543344443
No 27
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=45.71 E-value=40 Score=28.32 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCC--CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecC
Q psy15835 34 DIP--SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYC 70 (116)
Q Consensus 34 ~iP--~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~ 70 (116)
.+| .|++||.|.|.-. .......+.|+|..+...
T Consensus 75 ~l~~~~~~~Gd~v~~~~~---~~~~~~~~~g~v~~~~~~ 110 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYDA---ANEGSQLATGILTRVTQK 110 (646)
T ss_dssp CCCCCCCCTTCEEEEEET---TTTSCCCEEEEEEEEETT
T ss_pred CCccCCCCCCCEEEEEec---CCCCCceEEEEEEEEeCC
Confidence 466 5999999988632 223345788999988754
No 28
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=45.64 E-value=64 Score=21.45 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeec-CCe---eeeEEEccccCCCcceEEEeecC
Q psy15835 39 FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVV-DNL---GAVPCTGDRHGPYLSLLGALGLD 108 (116)
Q Consensus 39 ~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~-~gv---GVEr~f~pl~SP~I~~IeVl~~~ 108 (116)
..|+.|+++-.. -.-.|+|.+...-. .++|+||+|.+ +|+ -.|.+| -.-.|+++++++.+
T Consensus 7 ~iGs~VSi~c~d-----~lGvYQG~i~~vd~--~~~tItL~~~f~NG~~~~s~eVtl---s~~DI~~L~ii~~~ 70 (84)
T 2vc8_A 7 WLGSIVSINCGD-----SLGVYQGRVSAVDQ--VSQTISLTRPFHNGVKCLVPEVTF---RAGDITELKILEIP 70 (84)
T ss_dssp TTTCEEEEECCT-----TTCEEEEEEEEEET--TTTEEEEEEEEETTEECSSSEEEE---EGGGCSEEEEEECC
T ss_pred ccCCEEEEEECC-----CceEEEEEEEEecc--CCCeEEEehhhhCCCCCCCcEEEE---EecChhheEEEecC
Confidence 589999988544 34599999998865 46789999986 333 134444 34468899988764
No 29
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=44.97 E-value=46 Score=23.23 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=30.2
Q ss_pred CCCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEe----cC-C-CceeEEEeeecCCeeeeEEE
Q psy15835 34 DIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKR----YC-G-LRHEFVLRNVVDNLGAVPCT 91 (116)
Q Consensus 34 ~iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r----~~-G-l~stFtlRni~~gvGVEr~f 91 (116)
..++|+.|++|.+. + +.+. |+... |+ | .--...+||+..|--+|.+|
T Consensus 12 ~~~~lr~G~~I~~~----g-----~p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf 64 (136)
T 2eif_A 12 NVGSLKVGQYVMID----G-----VPCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVA 64 (136)
T ss_dssp EGGGCCTTSEEEET----T-----EEEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEE
T ss_pred EHHHCcCCCEEEEC----C-----EEEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEe
Confidence 35789999998662 1 1232 33322 22 3 22345699999999999999
No 30
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=42.89 E-value=34 Score=23.92 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=18.4
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEE
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGIC 64 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~ 64 (116)
..|||+|.+++.+.+.+...-.|.+.+
T Consensus 121 V~pGD~L~~~v~v~~~~~g~~~~~~~~ 147 (168)
T 1u1z_A 121 VLPGDQLQLHAKFISVKRSIWKFDCHA 147 (168)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEeCCEEEEEEEE
Confidence 469999999988865444445555544
No 31
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=42.59 E-value=14 Score=23.53 Aligned_cols=36 Identities=17% Similarity=0.007 Sum_probs=25.8
Q ss_pred eeeeEEEEEEEEecCCCceeEEEeeec-CCeeeeEEE
Q psy15835 56 KTRKFVGICIQKRYCGLRHEFVLRNVV-DNLGAVPCT 91 (116)
Q Consensus 56 r~q~F~Gv~Ia~r~~Gl~stFtlRni~-~gvGVEr~f 91 (116)
|.+.|.|.|.......-..++.+||-+ -|-++|..-
T Consensus 4 ~~~~fvG~V~~~~~~~g~~~ie~rN~f~~GD~iEi~~ 40 (89)
T 4he6_A 4 TTREFAGLVLGYDPETGIATVQQRNHFRPGDEVEFFG 40 (89)
T ss_dssp SGGGCSEEEEEEETTTTEEEEEESSCBCTTCEEEEES
T ss_pred cccEEEEEEEEEeCCCCEEEEEEcCCcCCCCEEEEEc
Confidence 567888998887555335678888864 577887655
No 32
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=40.71 E-value=20 Score=24.68 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=19.5
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEEE
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGICI 65 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~I 65 (116)
..|||++.++..+...+...-.|.|.+.
T Consensus 107 V~PGd~L~i~~~v~~~~~~~~~~~~~~~ 134 (152)
T 4i83_A 107 VIPGDQLVFEVELLTSRRGIGKFNAVAK 134 (152)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 4799999999888654444556666543
No 33
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.58 E-value=14 Score=22.38 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=20.2
Q ss_pred CCcCCCCEEEEEEEecCCCceeeeEEEEEEEEec
Q psy15835 36 PSFFVGSILSVTSADKHDPNKTRKFVGICIQKRY 69 (116)
Q Consensus 36 P~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~ 69 (116)
..|.+||.|+|.-=- ..-|.|++....+
T Consensus 6 ~~f~~GD~V~V~~Gp------f~g~~G~V~evd~ 33 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE------LINLQGKILSVDG 33 (59)
T ss_dssp SSCCTTSEEEECSST------TTTCEEEECCCBT
T ss_pred ccCCCCCEEEEeecC------CCCCEEEEEEEeC
Confidence 358999999986211 3467888888875
No 34
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=37.64 E-value=47 Score=21.51 Aligned_cols=26 Identities=4% Similarity=-0.142 Sum_probs=16.2
Q ss_pred cCCCCEEEEEEEec--CCCceeeeEEEE
Q psy15835 38 FFVGSILSVTSADK--HDPNKTRKFVGI 63 (116)
Q Consensus 38 f~~GD~v~V~~~i~--e~k~r~q~F~Gv 63 (116)
.++||+|.++..+. ..+.+...+.+.
T Consensus 73 v~~Gd~l~~~a~v~~~~~~~~~~~v~~~ 100 (121)
T 2f41_A 73 VKQGERVVAKAKVTAVEKEKGRTVVEVN 100 (121)
T ss_dssp CBTTCEEEEEEEEEEECSSSSCEEEEEE
T ss_pred cCCCCEEEEEEEEEEEEccCCEEEEEEE
Confidence 46899998888876 333334344443
No 35
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=37.24 E-value=19 Score=25.92 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=27.3
Q ss_pred CCCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEec
Q psy15835 34 DIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRY 69 (116)
Q Consensus 34 ~iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~ 69 (116)
.+|.-.+||+|.|+++...-.-+.+.+.++|+..+.
T Consensus 48 r~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRtkk 83 (137)
T 3u5e_V 48 RLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAK 83 (137)
T ss_dssp CCCEECTTCEEEEECSSBCTTTTTSCEEEEEEECCS
T ss_pred ccccCCcCCEEEEEEEECCCCCCCcEEEEEEEEecc
Confidence 467889999999998754323356899999998654
No 36
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=35.65 E-value=22 Score=24.21 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=18.0
Q ss_pred CcCCCCEEEEEEEecCCCc--eeeeEEEEE
Q psy15835 37 SFFVGSILSVTSADKHDPN--KTRKFVGIC 64 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~--r~q~F~Gv~ 64 (116)
..+|||+|.++..+.+.+. ..-.+.+.+
T Consensus 106 pV~pGd~l~~~~~v~~~~~~~g~~~~~~~~ 135 (154)
T 1z6b_A 106 PVLPGDTLTMQANLISFKSSLGIAKLSGVG 135 (154)
T ss_dssp CCCTTCEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCceEEEEEEEE
Confidence 3578999999988865222 224555554
No 37
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=34.34 E-value=43 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=14.4
Q ss_pred CcCCCCEEEEEEEecCCCceeeeE
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKF 60 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F 60 (116)
.|.+||+|.|.=++.+.....+..
T Consensus 63 ~i~~Gdvv~i~g~v~~~~~~~el~ 86 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQGYSGLEIS 86 (97)
T ss_dssp CCCTTCEEEEEEEEEEC--CEEEE
T ss_pred ccCCCCEEEEEEEEEEcCCeEEEE
Confidence 578999998866655443344433
No 38
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=34.05 E-value=1e+02 Score=20.33 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=48.8
Q ss_pred CCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEccccCCCcceEEEeecCCccc
Q psy15835 40 VGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIV 112 (116)
Q Consensus 40 ~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~pl~SP~I~~IeVl~~~p~~~ 112 (116)
.|=.|+|+..+ -..|+|++.+.--.. -++.|-|...+...-+.+ +....|++|+|++..+..+
T Consensus 16 i~KeV~V~l~d------g~~y~G~l~tvDp~s--~sIvL~n~~~~~~~~~~i--I~G~aI~eI~v~~~~~~~~ 78 (86)
T 1y96_A 16 IYKEVRVTASE------KNEYKGWVLTTDPVS--ANIVLVNFLEDGSMSVTG--IMGHAVQTVETMNEGDHRV 78 (86)
T ss_dssp TTCEEEEEETT------TEEEEEEEEEECTTT--CCEEEEEECTTSCEEEEE--ECGGGEEEEEEEECCCHHH
T ss_pred cCCEEEEEEcC------CCEEEEEEEEECCCc--eEEEEeecccCCeEEEEE--EecceEEEEEEecchhHHH
Confidence 67777887665 358999999987654 457788887777777776 8888999999999887653
No 39
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=31.65 E-value=30 Score=26.57 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=13.7
Q ss_pred CCCCCc-CCCCEEEEEE
Q psy15835 33 IDIPSF-FVGSILSVTS 48 (116)
Q Consensus 33 ~~iP~f-~~GD~v~V~~ 48 (116)
..+|.+ .+||+|.++=
T Consensus 62 ~~LP~v~~~GDII~l~~ 78 (294)
T 1xjv_A 62 EALPIIYKNGDIVRFHR 78 (294)
T ss_dssp GGSCCCCSTTCEEEEEE
T ss_pred HHCCCCCCCCCEEEEEE
Confidence 469988 9999999983
No 40
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=31.48 E-value=80 Score=21.65 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=18.4
Q ss_pred cCCCCEEEEEEEecCCC-ceeeeEEEE
Q psy15835 38 FFVGSILSVTSADKHDP-NKTRKFVGI 63 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k-~r~q~F~Gv 63 (116)
.++||+|.++..+...+ .+...+.+.
T Consensus 100 V~~GD~L~a~a~v~~~~~~~~~~v~~~ 126 (152)
T 3bnv_A 100 LKLGDVLELEAHALFDETSKKRDVKVV 126 (152)
T ss_dssp CBTTCEEEEEEEECCCSSCSEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEcCCcEEEEEEE
Confidence 47899999999887755 555555543
No 41
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.04 E-value=68 Score=22.44 Aligned_cols=31 Identities=6% Similarity=0.297 Sum_probs=24.6
Q ss_pred cCCCCEEEEEEEec--CCC-ceeeeEEEEEEEEe
Q psy15835 38 FFVGSILSVTSADK--HDP-NKTRKFVGICIQKR 68 (116)
Q Consensus 38 f~~GD~v~V~~~i~--e~k-~r~q~F~Gv~Ia~r 68 (116)
-.+||+|.|+++.. +.+ +|.+.+.++++..+
T Consensus 33 a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk 66 (121)
T 3bbo_M 33 ARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTC 66 (121)
T ss_dssp CCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECS
T ss_pred cccCcEEEEEEEEccCCCccccCcEEEEEEEEec
Confidence 57999999999864 332 57889999999865
No 42
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=30.91 E-value=2.1e+02 Score=23.14 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCcCCCCEEEEEEEecC-----CCceeeeEEEEEEEEecCCCceeEEEeeecCCee--eeEEEcc-c----cCCCcceEE
Q psy15835 36 PSFFVGSILSVTSADKH-----DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLG--AVPCTGD-R----HGPYLSLLG 103 (116)
Q Consensus 36 P~f~~GD~v~V~~~i~e-----~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvG--VEr~f~p-l----~SP~I~~Ie 103 (116)
..++.||+|.+....-. ++.=-..-.|+++... . ...+|+.+..-| |+.-|.- + .+|....|.
T Consensus 239 ~~I~~GDII~I~t~~~~l~~~ig~GLDVsHvGiai~~~-g----~l~lrhASS~~~kVVd~pL~~Yl~~~~~~~s~~GI~ 313 (333)
T 2im9_A 239 SQIPNGAVIEIIRPNWDLRQQIGTELDISHLGFAIWIN-N----ELFFRQASSQYGKVVDVSLIDYLDKARSSPTIKGIN 313 (333)
T ss_dssp TTSCTTCEEEEEEEEECCHHHHSSCEEEEEEEEEEEET-T----EEEEEEEETTTTEEEEEEHHHHHHHHTTCSSCCEEE
T ss_pred hhCCCCCEEEEEecCccccccccCCCcceEEEEEEEEC-C----eEEEEecCCCCCeEEeccHHHHHhhcccCCCccceE
Confidence 56899999999976311 1222346779999873 2 477999886655 3332301 1 369999999
Q ss_pred EeecCCcc
Q psy15835 104 ALGLDPKI 111 (116)
Q Consensus 104 Vl~~~p~~ 111 (116)
|++--|.-
T Consensus 314 V~r~~p~~ 321 (333)
T 2im9_A 314 IQVVLPEK 321 (333)
T ss_dssp EEEECCSS
T ss_pred EEEecCCC
Confidence 99887754
No 43
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.24 E-value=67 Score=21.28 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEE
Q psy15835 35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCT 91 (116)
Q Consensus 35 iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f 91 (116)
-+.|.+||.|.-.+.+ -+-|.+.|.++.+.| +|||+= .+ |...+-
T Consensus 19 ~~~f~vGd~VlArW~D------~~yYPAkI~sV~~~~---~YtV~F--~D-G~~etv 63 (85)
T 3qii_A 19 SSEFQINEQVLACWSD------CRFYPAKVTAVNKDG---TYTVKF--YD-GVVQTV 63 (85)
T ss_dssp --CCCTTCEEEEECTT------SCEEEEEEEEECTTS---EEEEEE--TT-SCEEEE
T ss_pred CcccccCCEEEEEeCC------CCEeeEEEEEECCCC---eEEEEE--eC-CCeEEe
Confidence 5689999999998822 347889999999885 588864 44 655554
No 44
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=30.07 E-value=44 Score=22.06 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.3
Q ss_pred HHHhhhhhcCCCCCCcCCCC
Q psy15835 23 RSDMIKRRSVIDIPSFFVGS 42 (116)
Q Consensus 23 r~~~~~r~~~~~iP~f~~GD 42 (116)
.+.+.+.+++..+|-||+|=
T Consensus 29 ~~~~~~~~k~~~ipGFRkGK 48 (109)
T 2nsc_A 29 DKAVRYLNQRVEIPGFRKGR 48 (109)
T ss_dssp HHHHHHHHTTCCCTTSCTTC
T ss_pred HHHHHHHhccCCCCCcCCCC
Confidence 34455555677899999993
No 45
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=29.65 E-value=1.1e+02 Score=21.15 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=30.1
Q ss_pred CCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCC--CceeEEEeeecCCeeeeEEEcc
Q psy15835 35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCG--LRHEFVLRNVVDNLGAVPCTGD 93 (116)
Q Consensus 35 iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~G--l~stFtlRni~~gvGVEr~f~p 93 (116)
..+|+.|.+|.+. +..=++..| =-.+-|+| .--...+||+..|--+|.+| +
T Consensus 11 ~~~lrkG~~i~~~----g~p~~Vve~---~~~KpGKgG~A~vr~k~knl~tG~~~e~tf-~ 63 (136)
T 1bkb_A 11 AGELKEGSYVVID----GEPCRVVEI---EKSKTGKHGSAKARIVAVGVFDGGKRTLSL-P 63 (136)
T ss_dssp GGGCCTTCEEEET----TEEEEEEEE---EEECCSTTSCCEEEEEEEETTTCCEEEEEE-E
T ss_pred HHHccCCCEEEEC----CEEEEEEEE---EEecCCCCCceEEEEEEEECCCCCeEEEEE-c
Confidence 3578999888653 111111111 11222432 23356699999999999999 6
No 46
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=28.36 E-value=67 Score=25.07 Aligned_cols=38 Identities=8% Similarity=-0.112 Sum_probs=22.6
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEE
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCT 91 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f 91 (116)
.+++||.+.+.+.+. -..+.++++|+...--.+|+..|
T Consensus 84 ~LRpGd~vsF~V~vr-----------------y~~~~s~v~i~~~~~pe~l~v~~ 121 (280)
T 2p26_A 84 YLRPGQAAAFNVTFR-----------------RAKLSSRVFLDHNALPDTLKVTY 121 (280)
T ss_dssp EECTTCCEEEEEEEC-----------------CSSCCSSEEEEECCCCTTEEEEE
T ss_pred EecCCCeEEEEEEEE-----------------ecccccEEEEeecCCCCcEEEEE
Confidence 457777777777664 34456666666544344455555
No 47
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=28.13 E-value=1.7e+02 Score=21.26 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=43.4
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCC--------CceeEEEe-----eecCCeeeeEEEccccCCCcceEE
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCG--------LRHEFVLR-----NVVDNLGAVPCTGDRHGPYLSLLG 103 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~G--------l~stFtlR-----ni~~gvGVEr~f~pl~SP~I~~Ie 103 (116)
.+.+|+.+.|++.-.. .+.|+|..|.-+..+ .--+|.+- +.+++++--.+- --.+|. .+|+
T Consensus 49 ~y~pG~~~~VtL~g~~----~~~F~GFlLqAr~~~~~~~~~~~~vGtF~~~~~~~tk~~~~C~naVTH-tn~~~K-~~V~ 122 (180)
T 3coo_A 49 FYKPGTSYRVTLSAAP----PSYFRGFTLIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTE-STPRRR-TRIQ 122 (180)
T ss_dssp EECTTCEEEEEEEECT----TCCBSCCEEEEEETTCCSSSGGGBCSEEECSCTTTEEEETTEEEEEEE-SSCCCB-SEEE
T ss_pred eecCCCcEEEEEeccC----CCceeEEEEEEEcCCCCccCCCCceeEEEecCCccccccccCcCccEe-cCCCCC-ceeE
Confidence 4789999999997432 257999888777543 23378763 334445322233 223344 5899
Q ss_pred EeecCCc
Q psy15835 104 ALGLDPK 110 (116)
Q Consensus 104 Vl~~~p~ 110 (116)
+.+..|.
T Consensus 123 v~W~AP~ 129 (180)
T 3coo_A 123 VFWIAPP 129 (180)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999987
No 48
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=28.08 E-value=84 Score=21.99 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=25.0
Q ss_pred CcCCCCEEEEEEEec--CCC-ceeeeEEEEEEEEec
Q psy15835 37 SFFVGSILSVTSADK--HDP-NKTRKFVGICIQKRY 69 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~--e~k-~r~q~F~Gv~Ia~r~ 69 (116)
.-.+||+|.|.++.. +.+ ++.+.+.++++..+.
T Consensus 32 ~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk 67 (122)
T 3r8s_K 32 YAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKK 67 (122)
T ss_dssp CBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSS
T ss_pred cccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 367999999999854 322 556899999998654
No 49
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=27.99 E-value=61 Score=22.40 Aligned_cols=51 Identities=6% Similarity=0.021 Sum_probs=31.0
Q ss_pred CCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEE
Q psy15835 35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCT 91 (116)
Q Consensus 35 iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f 91 (116)
-..|.+||.|+|.- +. ..-|.|++.......-.-+..+=-.-..+.||.-|
T Consensus 89 ~~~~~~Gd~VrI~~----Gp--f~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~ 139 (152)
T 3p8b_B 89 VSGLEPGDLVEVIA----GP--FKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKG 139 (152)
T ss_dssp TTTCCTTCEEEECS----ST--TTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEG
T ss_pred cccCCCCCEEEEee----ec--CCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECH
Confidence 35799999999862 11 45678999998876543333332222234565555
No 50
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=27.73 E-value=1e+02 Score=23.82 Aligned_cols=36 Identities=11% Similarity=-0.025 Sum_probs=25.4
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEE
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVL 78 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtl 78 (116)
.|.+|+.|+|.+ +. -..|.|+|-....+|-..+.+|
T Consensus 56 ~~~~G~~v~v~i----G~--~~v~~G~Vd~v~~~~~~~~~~i 91 (361)
T 3cdd_A 56 PIKQGQACTVDI----GG--ERVITGYVDDWVPSYDESTITI 91 (361)
T ss_dssp CCCTTCEEEEEE----TT--EEEEEEEEEEEEEEECSSEEEE
T ss_pred ccCCCCEEEEEE----CC--eEEEEEEEeeEEccCCCCceEE
Confidence 468999999987 22 2689999988886654433444
No 51
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=27.56 E-value=26 Score=25.80 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=10.1
Q ss_pred CcCCCCEEEEE
Q psy15835 37 SFFVGSILSVT 47 (116)
Q Consensus 37 ~f~~GD~v~V~ 47 (116)
+++.||+|+|.
T Consensus 63 eLRiGD~VKVd 73 (153)
T 2fhd_A 63 FLKKGDVVQST 73 (153)
T ss_dssp CCCTTCEEEET
T ss_pred eeecCCEEEEC
Confidence 68999999998
No 52
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=26.78 E-value=68 Score=22.32 Aligned_cols=27 Identities=4% Similarity=-0.135 Sum_probs=16.4
Q ss_pred cCCCCEEEEEEEec--CCCceeeeEEEEE
Q psy15835 38 FFVGSILSVTSADK--HDPNKTRKFVGIC 64 (116)
Q Consensus 38 f~~GD~v~V~~~i~--e~k~r~q~F~Gv~ 64 (116)
.++||+|.++..+. ..+.+...+.+.+
T Consensus 109 V~~GD~L~a~a~v~~~~~~~~~~~v~~~~ 137 (157)
T 2f3x_A 109 VKQGERVVAKAKVTAVEKEKGRTVVEVNS 137 (157)
T ss_dssp CBTTCEEEEEEEEEEEETGGGEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEEccCCEEEEEEEE
Confidence 46899888888876 3333444444433
No 53
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=26.65 E-value=61 Score=19.83 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=15.0
Q ss_pred CcCCCCEEEEEEEecC-CCcee
Q psy15835 37 SFFVGSILSVTSADKH-DPNKT 57 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e-~k~r~ 57 (116)
.|++||.|+|.+.-.. .+.|+
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~i 66 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKREI 66 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTEE
T ss_pred eeCCCCEEEEEEEEEECCCCEE
Confidence 4899999999987543 33443
No 54
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=26.58 E-value=85 Score=21.97 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=21.1
Q ss_pred CCcCCCCEEEEEEEecCCCceeeeEEEEEEEEec
Q psy15835 36 PSFFVGSILSVTSADKHDPNKTRKFVGICIQKRY 69 (116)
Q Consensus 36 P~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~ 69 (116)
++|..||.|+|..+..+ .+--.=+.|.|+..+|
T Consensus 59 ~~f~~gd~VEV~~~~~d-~ep~gWw~a~I~~~kg 91 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANE-QEPCGWWLARVRMMKG 91 (128)
T ss_dssp -CCCTTCEEEEEECC----CCCEEEEEEEEEEET
T ss_pred cCCCCCCEEEEEecCCC-CCcCccEEEEEEEeeC
Confidence 47999999999776433 2223356777777764
No 55
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=26.49 E-value=52 Score=18.83 Aligned_cols=13 Identities=23% Similarity=0.069 Sum_probs=10.7
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 21 ELEVDDPLLVELQ 33 (62)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCCCCCEEEEEEe
Confidence 5899999999643
No 56
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=26.40 E-value=55 Score=22.72 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=15.0
Q ss_pred cCCCCEEEEEEEecCCCc
Q psy15835 38 FFVGSILSVTSADKHDPN 55 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~ 55 (116)
..|||+|.+++.+...+.
T Consensus 78 V~PGD~l~l~v~~~~~~~ 95 (129)
T 3esi_A 78 ILPGKTLRLVLIWHAGKQ 95 (129)
T ss_dssp CCTTCEEEEEEEEETTTT
T ss_pred cCCCCEEEEEEEEEecCC
Confidence 589999999999876554
No 57
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.32 E-value=88 Score=20.58 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.4
Q ss_pred CcCCCCEEEEEEEecC
Q psy15835 37 SFFVGSILSVTSADKH 52 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e 52 (116)
.|++||.|+|.+.-..
T Consensus 67 ~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 67 KLKVGQYLNCIVEKVK 82 (119)
T ss_dssp CCCTTCEEEEEEEECC
T ss_pred EeCCCCEEEEEEEEEe
Confidence 4899999999987654
No 58
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=26.20 E-value=27 Score=20.48 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=19.7
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecC
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYC 70 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~ 70 (116)
.|.+||.|+|.- .-..-|+|.+......
T Consensus 4 ~~~~Gd~V~V~~------Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 4 AFREGDQVRVVS------GPFADFTGTVTEINPE 31 (58)
T ss_dssp SCCTTCEEEECS------GGGTTCEEEEEEEETT
T ss_pred ccCCCCEEEEee------cCCCCcEEEEEEEcCC
Confidence 478999998862 1134678998888654
No 59
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=26.00 E-value=91 Score=21.76 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=24.3
Q ss_pred cCCCCEEEEEEEec--CCC-ceeeeEEEEEEEEe
Q psy15835 38 FFVGSILSVTSADK--HDP-NKTRKFVGICIQKR 68 (116)
Q Consensus 38 f~~GD~v~V~~~i~--e~k-~r~q~F~Gv~Ia~r 68 (116)
-.+||+|.|+++.. +.+ ++.+.+.++++..+
T Consensus 33 a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk 66 (122)
T 1whi_A 33 ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTK 66 (122)
T ss_dssp BCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECS
T ss_pred cccCeEEEEEEEEecCCCccccccEEEEEEEEec
Confidence 57999999999864 333 55789999999865
No 60
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=25.65 E-value=52 Score=20.91 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=15.9
Q ss_pred CCCCCcCCCCEEEEEEEecC
Q psy15835 33 IDIPSFFVGSILSVTSADKH 52 (116)
Q Consensus 33 ~~iP~f~~GD~v~V~~~i~e 52 (116)
..+..|++||.|+..+...+
T Consensus 49 ~~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 49 TKMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp CEECCCCTTCEEEEEEEEET
T ss_pred hhhhcCCCCCEEEEEEEEeC
Confidence 35678999999999987544
No 61
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=25.53 E-value=51 Score=21.35 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=15.8
Q ss_pred CCCCCcCCCCEEEEEEEecC
Q psy15835 33 IDIPSFFVGSILSVTSADKH 52 (116)
Q Consensus 33 ~~iP~f~~GD~v~V~~~i~e 52 (116)
..+..|++||.|+..+...+
T Consensus 57 ~~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 57 TKMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp CEECCCCTTCEEEEEEEEET
T ss_pred hhhhcCCCCCEEEEEEEEeC
Confidence 34677999999999987654
No 62
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=25.41 E-value=64 Score=22.75 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=12.5
Q ss_pred CcCCCCEEEEEEEec
Q psy15835 37 SFFVGSILSVTSADK 51 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~ 51 (116)
.|+.||.|+|.+.-.
T Consensus 135 ~~~~Gd~VrvkV~~v 149 (180)
T 4ayb_E 135 VIQKGDKVRARVISV 149 (180)
T ss_dssp CCCTTCEEEEEEEEE
T ss_pred EECCCCEEEEEEEEE
Confidence 389999999999754
No 63
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=25.39 E-value=57 Score=18.20 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=11.8
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 19 PLKKGDVIYITREE 32 (58)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 48999999998664
No 64
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=25.08 E-value=52 Score=23.11 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=12.2
Q ss_pred cCCCCEEEEEEEecC
Q psy15835 38 FFVGSILSVTSADKH 52 (116)
Q Consensus 38 f~~GD~v~V~~~i~e 52 (116)
.++||+|.++..+.+
T Consensus 116 V~~GDtl~~~~~V~~ 130 (159)
T 3k67_A 116 VRIGDVVRVEGVVSG 130 (159)
T ss_dssp CCTTCEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEE
Confidence 578999999888754
No 65
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=24.40 E-value=69 Score=25.54 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=21.6
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCC
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGL 72 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl 72 (116)
.+|||+++|++..-+-. . .|++-...+.|+
T Consensus 71 AePGD~L~V~I~~i~~~----~-~G~~~~~pg~G~ 100 (301)
T 3mjj_A 71 AKEGDVLKVKIKKIEVA----E-KGVLATGKGLGV 100 (301)
T ss_dssp CCTTCEEEEEEEEEEEC----S-EEEEEEETTCST
T ss_pred CCCCCEEEEEEEEEEec----C-cEEEEeCCCccc
Confidence 56999999999875421 1 188877777764
No 66
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=24.30 E-value=95 Score=21.70 Aligned_cols=33 Identities=6% Similarity=0.170 Sum_probs=25.2
Q ss_pred CcCCCCEEEEEEEec--CC-CceeeeEEEEEEEEec
Q psy15835 37 SFFVGSILSVTSADK--HD-PNKTRKFVGICIQKRY 69 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~--e~-k~r~q~F~Gv~Ia~r~ 69 (116)
.-.+||+|.|.++.. +. .++.+.+.++++..+.
T Consensus 32 ~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk 67 (122)
T 3v2d_O 32 YATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKK 67 (122)
T ss_dssp CBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSS
T ss_pred ccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 357999999999854 33 3567899999998654
No 67
>2b3n_A Hypothetical protein AF1124; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A 3k67_A
Probab=24.22 E-value=68 Score=22.24 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=12.1
Q ss_pred cCCCCEEEEEEEecC
Q psy15835 38 FFVGSILSVTSADKH 52 (116)
Q Consensus 38 f~~GD~v~V~~~i~e 52 (116)
..+||+|.++..+.+
T Consensus 116 V~~GD~L~~~~~v~~ 130 (159)
T 2b3n_A 116 VRIGDVVRVEGVVSG 130 (159)
T ss_dssp CCTTCEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEE
Confidence 578999999988754
No 68
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=24.18 E-value=64 Score=21.69 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=13.7
Q ss_pred HHHhhhhhcCCCCCCcCCC
Q psy15835 23 RSDMIKRRSVIDIPSFFVG 41 (116)
Q Consensus 23 r~~~~~r~~~~~iP~f~~G 41 (116)
.+.+.+.++...+|-||+|
T Consensus 32 ~~~~~~~~k~v~ipGFRkG 50 (121)
T 1p9y_A 32 KSELVNVAKKVRIDGLRKG 50 (121)
T ss_dssp HHHHHHHHTTCCCTTSCTT
T ss_pred HHHHHHHHhhCccCCcCCC
Confidence 3445555567789999999
No 69
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=24.16 E-value=61 Score=18.29 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 22 s~~~Gd~i~v~~~~ 35 (59)
T 2g6f_X 22 SFSKGDVIHVTRVE 35 (59)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 48999999998654
No 70
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=23.87 E-value=1.1e+02 Score=19.68 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=16.3
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEEEEEEE
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVGICIQK 67 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~ 67 (116)
..+||.|.|..... |.-+|-+|.+
T Consensus 54 Il~GD~V~ve~~~y------d~~kgrIi~R 77 (79)
T 3i4o_A 54 ILPEDRVVVELSPY------DLSRGRIVYR 77 (79)
T ss_dssp CCTTCEEEEEEETT------EEEEEEEEEE
T ss_pred CCCCCEEEEEECcc------CCCcEEEEEE
Confidence 47999999988763 3334665554
No 71
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=23.76 E-value=43 Score=24.17 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.2
Q ss_pred CCCCCcCCCCEEEEEEEe
Q psy15835 33 IDIPSFFVGSILSVTSAD 50 (116)
Q Consensus 33 ~~iP~f~~GD~v~V~~~i 50 (116)
-+.|.+..||+|.|||.-
T Consensus 22 G~~p~~~~G~~V~vhY~g 39 (165)
T 2lkn_A 22 GELPDFQDGTKATFHYRT 39 (165)
T ss_dssp SCCCCCCTTCEEEEECEE
T ss_pred CCCCCCCCCCEEEEEEEE
Confidence 356888999999999974
No 72
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=23.74 E-value=47 Score=19.50 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 26 s~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 26 ALEVGELVKVTKIN 39 (67)
T ss_dssp CBCSSEEEEEEEEC
T ss_pred ccCCCCEEEEEEec
Confidence 48999999998664
No 73
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=23.66 E-value=63 Score=18.16 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 20 s~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 20 GLKPGDKVQLLEKL 33 (58)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEec
Confidence 48999999998654
No 74
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=23.62 E-value=59 Score=18.57 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=11.8
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (62)
T 1k4u_S 23 EFQEGDIILVLSKV 36 (62)
T ss_dssp CBCSSCEEEEEEES
T ss_pred cCCCCCEEEEEEeC
Confidence 48999999998764
No 75
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.59 E-value=1.5e+02 Score=19.22 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=30.8
Q ss_pred cCCCCCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCe
Q psy15835 31 SVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 85 (116)
Q Consensus 31 ~~~~iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gv 85 (116)
+......+++||.+...+.. + -+-|.++|.++... +.+++|.=+-.|-
T Consensus 4 ~~~~~~~~kvGd~C~A~ys~--D---g~wYrA~I~~i~~~--~~~~~V~fiDYGN 51 (88)
T 1g5v_A 4 TAASLQQWKVGDKCSAIWSE--D---GCIYPATIASIDFK--RETCVVVYTGYGN 51 (88)
T ss_dssp -----CCCCSSCEEEEECTT--T---CCEEEEEEEEEETT--TTEEEEEETTTCC
T ss_pred cCCccCCCCCCCEEEEEECC--C---CCEEEEEEEEecCC--CCEEEEEEecCCC
Confidence 34445678999999998842 1 24788999998764 2467887765444
No 76
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=23.55 E-value=45 Score=18.54 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 18 s~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 18 SIDPGDIITVIRGD 31 (54)
T ss_dssp CBCTTCEEEEEECC
T ss_pred cCCCCCEEEEEEec
Confidence 48999999998654
No 77
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=23.41 E-value=44 Score=19.59 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=11.2
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 28 sf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 28 RLNPGDIVELTKA 40 (70)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CcCCCCEEEEEeC
Confidence 4899999999865
No 78
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=23.26 E-value=69 Score=17.88 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=11.2
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (59)
T 1yn8_A 19 RLAEGDIVFISYKH 32 (59)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCCCCCEEEEEEcC
Confidence 48999999997543
No 79
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=22.98 E-value=46 Score=18.77 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 19 s~~~Gd~i~v~~~~ 32 (58)
T 2bz8_A 19 TISVGEIITNIRKE 32 (58)
T ss_dssp CBCTTCEEEEEECC
T ss_pred eECCCCEEEEEEeC
Confidence 58999999998653
No 80
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=22.85 E-value=67 Score=18.25 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.8
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 22 s~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 22 NFKAGDVIFLLSRI 35 (60)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEeC
Confidence 48999999998764
No 81
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=22.70 E-value=47 Score=18.73 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 18 s~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 18 TFVENDKIINIEF 30 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred ccCCCCEEEEEEe
Confidence 5899999999764
No 82
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=22.68 E-value=65 Score=19.35 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 24 s~~~Gd~i~v~~~~ 37 (65)
T 2lj0_A 24 ELRDGDIVDVMEKC 37 (65)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEeEeC
Confidence 49999999997554
No 83
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=22.55 E-value=66 Score=18.75 Aligned_cols=14 Identities=29% Similarity=0.282 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 25 sf~~Gd~i~v~~~~ 38 (68)
T 1tg0_A 25 NFEKDQEIIVTSVE 38 (68)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 48999999998653
No 84
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=22.38 E-value=73 Score=18.07 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=11.9
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 24 s~~~Gd~i~v~~~~ 37 (60)
T 2gnc_A 24 SFKKGASLLLYHRA 37 (60)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCCCCCEEEEEEec
Confidence 58999999998764
No 85
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=22.27 E-value=49 Score=18.53 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (57)
T 1cka_A 19 PFKKGDILRIRDK 31 (57)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 4899999999754
No 86
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=22.17 E-value=49 Score=18.59 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (58)
T 1uti_A 19 GFRSGEVVEVLDS 31 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEE
Confidence 5899999999754
No 87
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=22.11 E-value=1.3e+02 Score=23.63 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=26.0
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCc--eeEEEe
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLR--HEFVLR 79 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~--stFtlR 79 (116)
.|.+|+.|+|.+ +. -..|.|+|-....++-. .+++++
T Consensus 52 ~~~~G~~i~v~i----G~--~~v~~G~Vd~v~~~~~~~~~ti~v~ 90 (381)
T 3d37_A 52 PDLSGESCEVVI----DG--QIVMTGIIGSQRHGKSKGSRELSLS 90 (381)
T ss_dssp CCCTTCEEEEEE----TT--EEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred ccCCCCEEEEEE----CC--eEEEEEEEeEEEeeecCCCcEEEEE
Confidence 467999999986 12 26889999988866433 455555
No 88
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=21.95 E-value=1.7e+02 Score=19.04 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
+|++||+|...-..
T Consensus 37 ~~~vGD~l~l~E~~ 50 (83)
T 3iuw_A 37 NFQVGDILILEEYM 50 (83)
T ss_dssp CCCTTCEEEEEEEE
T ss_pred CCCCCCEEEEEEcc
Confidence 38999999987664
No 89
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=21.86 E-value=51 Score=18.48 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=11.1
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 20 s~~~Gd~i~v~~~ 32 (58)
T 1sem_A 20 AFKRGDVITLINK 32 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 4899999999865
No 90
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=21.84 E-value=54 Score=21.74 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=12.7
Q ss_pred HhhhhhcCCCCCCcCCCC
Q psy15835 25 DMIKRRSVIDIPSFFVGS 42 (116)
Q Consensus 25 ~~~~r~~~~~iP~f~~GD 42 (116)
.+.+.++...+|-||+|=
T Consensus 30 ~~~~~~k~~~ipGFRkGK 47 (112)
T 2d3o_1 30 VWAGLARDVRVPGFRPGK 47 (112)
T ss_dssp HHHHHHTTSCBTTBCTTC
T ss_pred HHHHHHhhCCCCCcCCCC
Confidence 344445567899999993
No 91
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=21.77 E-value=40 Score=21.54 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=19.4
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecC
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYC 70 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~ 70 (116)
.|++||-|+|-- + +-+--.|.|++..+.
T Consensus 17 ~F~~GDHVkVi~----G--~~~getGlVV~v~~d 44 (69)
T 2do3_A 17 YFKMGDHVKVIA----G--RFEGDTGLIVRVEEN 44 (69)
T ss_dssp SCCTTCEEEESS----S--TTTTCEEEEEEECSS
T ss_pred eccCCCeEEEec----c--EEcCceEEEEEEeCC
Confidence 499999998852 1 333446888888743
No 92
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural Pro; 2.10A {Enterobacteria phage MU} SCOP: b.106.1.1 b.106.1.1
Probab=21.54 E-value=1.4e+02 Score=23.39 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=26.5
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCC--ceeEEEee
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGL--RHEFVLRN 80 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl--~stFtlRn 80 (116)
.|.+|+.|+|.+ +. -..|.|+|-....++- ..+++|+-
T Consensus 47 ~~~~G~~l~v~i----G~--~~v~~G~Vd~v~~~~~~~~~~i~i~g 86 (379)
T 1wru_A 47 GLAPGKKFTLEI----GG--QIVCTGYIDSRRRQMTADSMKITVAG 86 (379)
T ss_dssp GGCTTCEEEEEE----TT--EEEEEEEEEEEEEEECSSCEEEEEEE
T ss_pred ccCCCCEEEEEE----CC--eeEEEEEEEEEEeeEcCCceEEEEEE
Confidence 568899999987 22 2688999988876543 34666643
No 93
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=21.52 E-value=45 Score=19.42 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=9.7
Q ss_pred CcCCCCEEEEE
Q psy15835 37 SFFVGSILSVT 47 (116)
Q Consensus 37 ~f~~GD~v~V~ 47 (116)
.|+.||+|.|.
T Consensus 26 sf~~Gd~i~v~ 36 (67)
T 3rnj_A 26 SFKEGDLITLL 36 (67)
T ss_dssp CBCTTCEEEEC
T ss_pred cCCCCCEEEEe
Confidence 59999999986
No 94
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=21.47 E-value=1.9e+02 Score=19.77 Aligned_cols=39 Identities=8% Similarity=-0.308 Sum_probs=28.0
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEE
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFV 77 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFt 77 (116)
.+.+||.|.|.+.... ...-.+.|.|+...+.|++=.|.
T Consensus 70 ~~~~g~~v~v~~~l~~--~~~i~~~~~Vvr~~~~~~gl~f~ 108 (145)
T 2l74_A 70 NGDPQRPFEARLYLGL--DVLIRMEISLAWARDGLLGFECQ 108 (145)
T ss_dssp CCCTTSCEEEEEECSS--SCEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCEEEEEEEcCC--CCeEEEEEEEEEEcCCEEEEEEE
Confidence 4789999999988543 22347889999888776655554
No 95
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=21.41 E-value=72 Score=18.58 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 21 sf~~Gd~i~v~~~~ 34 (67)
T 2bzy_A 21 ALEVGDIVKVTRMN 34 (67)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred ccCCCCEEEEEEec
Confidence 58999999998664
No 96
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=21.34 E-value=1.3e+02 Score=18.98 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=11.5
Q ss_pred cCCCCEEEEEEEecC
Q psy15835 38 FFVGSILSVTSADKH 52 (116)
Q Consensus 38 f~~GD~v~V~~~i~e 52 (116)
.++||+|.++.++.+
T Consensus 88 v~~Gd~l~~~~~v~~ 102 (134)
T 1iq6_A 88 VFVGDEVTAEVEVTA 102 (134)
T ss_dssp CBTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEE
Confidence 478999888887754
No 97
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=21.25 E-value=1.1e+02 Score=22.70 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=23.0
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEe
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKR 68 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r 68 (116)
...+||+|..++++.. ++.|.|.=+-++
T Consensus 17 ~~~VGdII~Atv~vnn----I~nfAGYQvNIK 44 (166)
T 2bm3_A 17 KGEVGDILIGTVRINN----IKNFAGFQVNIV 44 (166)
T ss_dssp CCCTTCEEEEEEEEES----CTTEEEEEEEEE
T ss_pred ceeeCCEEEEEEEEcc----cccccceEEEEE
Confidence 3589999999999976 788999766655
No 98
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=21.18 E-value=53 Score=18.72 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 21 s~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 21 TFTKSAIIQNVEKQ 34 (61)
T ss_dssp CBCTTCEEEEEECC
T ss_pred CCcCCCEEEEEEec
Confidence 58999999998653
No 99
>3d6l_A Putative hydrolase; hot DOG fold, thioesterase, acyl-COA; 2.59A {Campylobacter jejuni}
Probab=21.15 E-value=1.3e+02 Score=19.05 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=12.7
Q ss_pred cCCCCEEEEEEEecCCCceeeeEEE
Q psy15835 38 FFVGSILSVTSADKHDPNKTRKFVG 62 (116)
Q Consensus 38 f~~GD~v~V~~~i~e~k~r~q~F~G 62 (116)
.+.||+|.++..+....++.-.+.+
T Consensus 63 v~~gd~l~v~~~v~~~g~~s~~~~~ 87 (137)
T 3d6l_A 63 VFIGDIISCYSKVVNVGNTSISVEV 87 (137)
T ss_dssp CCTTCEEEEEEEEEEECSSEEEEEE
T ss_pred ccCCCEEEEEEEEEEeCCcEEEEEE
Confidence 3456666666666543333333433
No 100
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=21.15 E-value=76 Score=17.93 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=11.7
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 23 SFNANDIIDIIKED 36 (60)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 48999999998664
No 101
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=20.98 E-value=74 Score=18.69 Aligned_cols=13 Identities=23% Similarity=0.069 Sum_probs=10.6
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 24 s~~~Gd~i~v~~~ 36 (71)
T 2fpf_A 24 ELEVDDPLLVELQ 36 (71)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCcCCcEEEEeEe
Confidence 4899999999643
No 102
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=20.94 E-value=54 Score=18.47 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.1
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 21 YFEEGDIIYITDM 33 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred cCCCCCEEEEEEe
Confidence 4899999999765
No 103
>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1
Probab=20.93 E-value=2.1e+02 Score=19.61 Aligned_cols=39 Identities=8% Similarity=-0.308 Sum_probs=28.1
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEE
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFV 77 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFt 77 (116)
.+.+||.|.|.+.... ...-.+.|.|+...+.|++=.|.
T Consensus 72 ~~~~g~~v~v~~~l~~--~~~i~~~~~Vvr~~~~~~gl~f~ 110 (149)
T 1ywu_A 72 NGDPQRPFEARLYLGL--DVLIRMEISLAWARDGLLGFECQ 110 (149)
T ss_dssp CCCTTSEEEEEEESSS--SCEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCEEEEEEEcCC--CCeEEEEEEEEEEcCCEEEEEEE
Confidence 4789999999988543 22347889999988776655554
No 104
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=20.87 E-value=86 Score=18.83 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 23 s~~~Gd~i~v~~~~ 36 (73)
T 2lcs_A 23 RLAEGDIVFISYKH 36 (73)
T ss_dssp CBCTTCEEEEEEEE
T ss_pred CCcCCCEEEEEEEc
Confidence 48999999997654
No 105
>1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural genomics, unknown funct; 1.94A {Pyrococcus horikoshii} SCOP: d.38.1.5
Probab=20.85 E-value=73 Score=20.44 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=13.0
Q ss_pred CCCCEEEEEEEecCCCceeeeEEEE
Q psy15835 39 FVGSILSVTSADKHDPNKTRKFVGI 63 (116)
Q Consensus 39 ~~GD~v~V~~~i~e~k~r~q~F~Gv 63 (116)
++||+|.++.++.+..++...+++-
T Consensus 82 ~~Gd~l~~~~~v~~~~~~~~~~~~~ 106 (131)
T 1ixl_A 82 KVGDKLVAKAKIIEDLGKKKIVEVK 106 (131)
T ss_dssp BTTCEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEEEEEEEecCcEEEEEEE
Confidence 5666666666665433333344433
No 106
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=20.84 E-value=55 Score=18.41 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=10.8
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 20 s~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 20 TIKSGDKVYILDD 32 (60)
T ss_dssp CBCTTCEEEEEES
T ss_pred cCCCCCEEEEEeC
Confidence 4899999999753
No 107
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=20.59 E-value=2.2e+02 Score=19.72 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=43.6
Q ss_pred CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCC--------CceeEEEe-----eecCCeeeeEEEccccCCCcceEE
Q psy15835 37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCG--------LRHEFVLR-----NVVDNLGAVPCTGDRHGPYLSLLG 103 (116)
Q Consensus 37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~G--------l~stFtlR-----ni~~gvGVEr~f~pl~SP~I~~Ie 103 (116)
.+.+|+.+.|++.-.. .+.|+|..|.-+..+ .--+|.+- +.++++.--.+. .-.+|. .+|+
T Consensus 34 ~y~pG~~~~VtL~~~~----~~~F~GFllqAr~~~~~~~~~~~~vG~F~~~~~~~tk~~~~C~naVTH-~~~~~K-~~v~ 107 (149)
T 2zou_A 34 FYKPGTSYRVTLSAAP----PSYFRGFTLIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTE-STPRRR-TRIQ 107 (149)
T ss_dssp SBCTTCEEEEEEEECT----TCCBSEEEEEEEETTCCSCSGGGBCSEEEESCTTTEEEETTEEEEEEE-SSCCCB-SEEE
T ss_pred eEcCCCcEEEEEeccC----CCceEEEEEEEEecCCccCCCCcceEEEEeCCCCccccccCCcCccEe-cCCCCC-cEeE
Confidence 4789999999997432 257999888877543 23388863 344445222222 222233 5899
Q ss_pred EeecCCc
Q psy15835 104 ALGLDPK 110 (116)
Q Consensus 104 Vl~~~p~ 110 (116)
+.+..|.
T Consensus 108 v~W~AP~ 114 (149)
T 2zou_A 108 VFWIAPP 114 (149)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999997
No 108
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=20.58 E-value=53 Score=19.75 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=11.3
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 36 sf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 36 RLNPGDIVELTKA 48 (78)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 4999999999866
No 109
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=20.40 E-value=56 Score=18.73 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 19 s~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 19 TIRVGEIIRNVKK 31 (62)
T ss_dssp CBCTTCEEEEEEE
T ss_pred CCcCCCEEEEEEe
Confidence 5899999999876
No 110
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=20.36 E-value=60 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 39 sf~~Gd~i~v~~~~ 52 (62)
T 1g2b_A 39 TMKKGDILTLLNST 52 (62)
T ss_dssp CBCTTCEEEEEECC
T ss_pred CCCCCCEEEEEEec
Confidence 48999999998654
No 111
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=20.26 E-value=56 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.5
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 24 s~~~Gd~i~v~~~~ 37 (64)
T 2jte_A 24 TFREGEIIHLISKE 37 (64)
T ss_dssp CBCTTCEEEEEESC
T ss_pred CCCCCCEEEEEECC
Confidence 59999999998653
No 112
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=20.25 E-value=99 Score=22.86 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=20.7
Q ss_pred cCCCCEEEEEEEecC-CCceee-----eEEEEEEEEecCC
Q psy15835 38 FFVGSILSVTSADKH-DPNKTR-----KFVGICIQKRYCG 71 (116)
Q Consensus 38 f~~GD~v~V~~~i~e-~k~r~q-----~F~Gv~Ia~r~~G 71 (116)
|++||+|++.+.... +..++. .=-|++.|+..+|
T Consensus 136 l~~GD~V~akVisi~~~~~~i~LS~k~~~lGVv~A~c~~g 175 (209)
T 2nn6_I 136 FRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESG 175 (209)
T ss_dssp CCSSSEEEEEEEEEETTTTEEEEECCSSSCEECCCBCSSS
T ss_pred cCCCCEEEEEEEEEeCCCCeEEEEEecCCCcEEEEEcCCC
Confidence 999999999886543 222222 1126666665543
No 113
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=20.24 E-value=56 Score=18.71 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 23 s~~~Gd~i~v~~~ 35 (62)
T 1uj0_A 23 TFKHGELITVLDD 35 (62)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEe
Confidence 4899999999864
No 114
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=20.18 E-value=80 Score=18.26 Aligned_cols=14 Identities=21% Similarity=0.244 Sum_probs=11.6
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 24 s~~~Gd~i~v~~~~ 37 (67)
T 2o9s_A 24 SFRKGERITLLRQV 37 (67)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEec
Confidence 48999999998653
No 115
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=20.07 E-value=81 Score=18.17 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=11.4
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 24 s~~~Gd~i~v~~~~ 37 (65)
T 2j05_A 24 SFLKGDMFIVHNEL 37 (65)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEeEec
Confidence 58999999997653
No 116
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=20.06 E-value=58 Score=18.21 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.3
Q ss_pred CcCCCCEEEEEEEe
Q psy15835 37 SFFVGSILSVTSAD 50 (116)
Q Consensus 37 ~f~~GD~v~V~~~i 50 (116)
.|+.||+|.|.-..
T Consensus 21 s~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 21 TFKEGDTIIVHQKD 34 (58)
T ss_dssp CBCTTCEEEEEECC
T ss_pred CCCCCCEEEEEEec
Confidence 48999999987653
No 117
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=20.03 E-value=58 Score=18.20 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=11.0
Q ss_pred CcCCCCEEEEEEE
Q psy15835 37 SFFVGSILSVTSA 49 (116)
Q Consensus 37 ~f~~GD~v~V~~~ 49 (116)
.|+.||+|.|.-.
T Consensus 20 s~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 20 GFRRGDFIHVMDN 32 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 4899999999864
Done!