RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15835
(116 letters)
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome,
large ribosomal subunit, ribosomal R ribosome; 12.10A
{Bos taurus}
Length = 98
Score = 56.5 bits (137), Expect = 5e-12
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLG 86
IP F+VGSIL VT+AD + K +F+GICIQ+ GL F+LRNV++ G
Sbjct: 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQG 52
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 233
Score = 33.1 bits (75), Expect = 0.012
Identities = 10/68 (14%), Positives = 26/68 (38%)
Query: 19 EKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVL 78
L + + + +P G I+ + + + + GI I ++ G+ +
Sbjct: 124 GILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRI 183
Query: 79 RNVVDNLG 86
R ++ +G
Sbjct: 184 RRIIAGVG 191
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N*
1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M*
3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q
1voy_Q 1vp0_Q
Length = 166
Score = 31.7 bits (72), Expect = 0.028
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 19 EKLERSDMIK---RRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLR 73
K+ R ++++ + +P F G + V + + + N+TR F G+ I G R
Sbjct: 5 IKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVR-EGNRTRSQAFEGVVIAINGSGSR 63
Query: 74 HEFVLRNV 81
F +R +
Sbjct: 64 KSFTVRKI 71
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P
2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P*
2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Length = 114
Score = 27.9 bits (63), Expect = 0.41
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 15 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGL 72
+ + ++LE+ M + D+PSF G + V + +K R F G+ I R GL
Sbjct: 1 SNIIKQLEQEQMKQ-----DVPSFRPGDTVEVKVWVV-EGSKKRLQAFEGVVIAIRNRGL 54
Query: 73 RHEFVLRNV 81
F +R +
Sbjct: 55 HSAFTVRKI 63
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T
2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T
2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Length = 146
Score = 28.1 bits (63), Expect = 0.42
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCG 71
R + + +E + D+P F G + V+ K + N+TR F GI I+ R G
Sbjct: 3 RGALIKLVESRYVRT-----DLPEFRPGDTVRVSYKVK-EGNRTRIQDFEGIVIRIRRNG 56
Query: 72 LRHEFVLRNV 81
F +R V
Sbjct: 57 FNTTFTVRKV 66
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase;
1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 26.0 bits (58), Expect = 3.4
Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 2 YQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILS 45
L E+ + Q+ + LE ++++ ++ + + V ++S
Sbjct: 50 LGVKLNGVEIFWPEQLEKCLENAEVV----LLGVSTDGVLPVMS 89
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding,
transcription, transcr factor, transcription regulation;
HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A*
2y84_A 2y7w_A 2y7r_A
Length = 218
Score = 25.7 bits (57), Expect = 4.0
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 67 KRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIVL 113
K++ L H V V HG LL G+ ++ L
Sbjct: 100 KQFTELEH--VG---------VVALNTGHGEVDGLLERAGIKRRMRL 135
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 25.4 bits (55), Expect = 6.2
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 48 SADKHDPNKTRKFVGIC----IQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLG 103
+ +H +KF IC I KRY EF+ + P DR + +
Sbjct: 57 TNSEHKVELKKKFDHICKKTMIGKRYFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVP 116
Query: 104 ALGLD 108
ALG +
Sbjct: 117 ALGTE 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.143 0.430
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,811,328
Number of extensions: 95474
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 10
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)