RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15835
         (116 letters)



>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 108

 Score = 47.1 bits (112), Expect = 1e-08
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 20 KLERSDMIK---RRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHE 75
          K+ R ++++   +     +P F  G  + V +  +  +  +++ F G+ I     G R  
Sbjct: 5  KINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 64

Query: 76 FVLRNVVDNLG 86
          F +R +    G
Sbjct: 65 FTVRKISFGEG 75


>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
          thermophilus [TaxId: 274]}
          Length = 138

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGL 72
          R  + + +E   +       D+P F  G  + V+   K     + + F GI I+ R  G 
Sbjct: 3  RGALIKLVESRYVRT-----DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF 57

Query: 73 RHEFVLRNVVDNLG 86
             F +R V   +G
Sbjct: 58 NTTFTVRKVSYGVG 71


>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia
          coli [TaxId: 562]}
          Length = 114

 Score = 39.4 bits (92), Expect = 8e-06
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 19 EKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFV 77
          ++LE+  M +     D+PSF  G  + V     +    + + F G+ I  R  GL   F 
Sbjct: 5  KQLEQEQMKQ-----DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFT 59

Query: 78 LRNVVDNLG 86
          +R + +  G
Sbjct: 60 VRKISNGEG 68


>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
           catalytic C-terminal domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 370

 Score = 24.7 bits (54), Expect = 3.2
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 8/44 (18%)

Query: 4   EFLPDPELKFRNQV--------REKLERSDMIKRRSVIDIPSFF 39
             L +  L+  N          RE L+R   +    +IDIP  F
Sbjct: 235 NILSNKTLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLF 278


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 444,117
Number of extensions: 18643
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)