BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15836
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P011|EMC4_DANRE ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2
SV=1
Length = 189
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 8/81 (9%)
Query: 1 MKWSVDFT---SRAKSDLPAPPG--YCPINNS---VQSDVTNQTDGNLLIKKCWEVALAP 52
MKW+V+ + SR++SD G P+ S V + D NL+ K+CW+VAL P
Sbjct: 23 MKWAVELSLGNSRSRSDRQGKDGDVMYPVGYSDKPVPDTSVQEADRNLVEKRCWDVALGP 82
Query: 53 IKQVPMNIVIMYMAGNSISIF 73
+KQ+PMN+ IMYM+GN+ISIF
Sbjct: 83 LKQIPMNLFIMYMSGNTISIF 103
>sp|B5XB24|EMC4_SALSA ER membrane protein complex subunit 4 OS=Salmo salar GN=emc4 PE=2
SV=1
Length = 188
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 8/81 (9%)
Query: 1 MKWSVDFT---SRAKSDLPAPPG--YCPINNS---VQSDVTNQTDGNLLIKKCWEVALAP 52
MKW+++ + +R + D + G PI S V +TD NL+ K+CW+VAL P
Sbjct: 22 MKWALELSLGNARGRGDRQSNQGDVMYPIGYSDKPVPDTSIQETDKNLVEKRCWDVALGP 81
Query: 53 IKQVPMNIVIMYMAGNSISIF 73
+KQ+PMN+ IMYM+GN+ISIF
Sbjct: 82 LKQIPMNLFIMYMSGNTISIF 102
>sp|Q9CZX9|EMC4_MOUSE ER membrane protein complex subunit 4 OS=Mus musculus GN=Emc4
PE=2 SV=1
Length = 183
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 11 AKSDLPAPPGYCPINNSVQSDVTNQTDGNLLIKKCWEVALAPIKQVPMNIVIMYMAGNSI 70
+ D P GY ++ V +TD L+ K+CW++AL P+KQ+PMN+ IMYMAGN+I
Sbjct: 37 GQGDSLYPVGY--LDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTI 94
Query: 71 SIF 73
SIF
Sbjct: 95 SIF 97
>sp|Q5RC35|EMC4_PONAB ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4
PE=2 SV=1
Length = 183
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 11 AKSDLPAPPGYCPINNSVQSDVTNQTDGNLLIKKCWEVALAPIKQVPMNIVIMYMAGNSI 70
+ D P GY ++ V +TD L+ K+CW++AL P+KQ+PMN+ IMYMAGN+I
Sbjct: 37 GQGDSLYPVGY--LDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTI 94
Query: 71 SIF 73
SIF
Sbjct: 95 SIF 97
>sp|Q5J8M3|EMC4_HUMAN ER membrane protein complex subunit 4 OS=Homo sapiens GN=EMC4
PE=1 SV=2
Length = 183
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 11 AKSDLPAPPGYCPINNSVQSDVTNQTDGNLLIKKCWEVALAPIKQVPMNIVIMYMAGNSI 70
+ D P GY ++ V +TD L+ K+CW++AL P+KQ+PMN+ IMYMAGN+I
Sbjct: 37 GQGDSLYPVGY--LDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTI 94
Query: 71 SIF 73
SIF
Sbjct: 95 SIF 97
>sp|Q3T0K8|EMC4_BOVIN ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2
SV=1
Length = 183
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 11 AKSDLPAPPGYCPINNSVQSDVTNQTDGNLLIKKCWEVALAPIKQVPMNIVIMYMAGNSI 70
+ D P GY ++ V +TD L+ K+CW++AL P+KQ+PMN+ IMYMAGN+I
Sbjct: 37 GQGDSLYPVGY--LDKQVPDTSVQETDRILVEKRCWDIALGPLKQIPMNLFIMYMAGNTI 94
Query: 71 SIF 73
SIF
Sbjct: 95 SIF 97
>sp|Q6PBF7|EMC4_XENTR ER membrane protein complex subunit 4 OS=Xenopus tropicalis
GN=emc4 PE=2 SV=1
Length = 180
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 2 KWSVDFTSRAK---------SDLPAPPGYCPINNSVQSDVTNQTDGNLLIKKCWEVALAP 52
KW+++F S D P GY + V ++D L+ K+CW++AL P
Sbjct: 16 KWAIEFGSGGSRGRGERGGLQDSMYPVGYS--DKQVPDTSVQESDHILVEKRCWDIALGP 73
Query: 53 IKQVPMNIVIMYMAGNSISIF 73
+KQ+PMN+ IMYMAGN+ISIF
Sbjct: 74 LKQIPMNLFIMYMAGNTISIF 94
>sp|Q6GR43|EMC4_XENLA ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4
PE=2 SV=1
Length = 180
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 2 KWSVDFTSRAK---------SDLPAPPGYCPINNSVQSDVTNQTDGNLLIKKCWEVALAP 52
KW+++F S D P GY + V ++D L+ K+CW++AL P
Sbjct: 16 KWAIEFGSGGSRGRGERGGLQDSMYPVGYS--DKQVPDTSVQESDHILVEKRCWDIALGP 73
Query: 53 IKQVPMNIVIMYMAGNSISIF 73
+KQ+PMN+ IMYMAGN+ISIF
Sbjct: 74 LKQIPMNLFIMYMAGNTISIF 94
>sp|O94520|YQ13_SCHPO ER membrane protein complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1281.03c PE=3 SV=1
Length = 193
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 20 GYCPINNSVQSDVTNQTDGNLLIKKCWEVALAPIKQVPMNIVIMYMAGNSISIF 73
G + S+ + + +LL+KK WE+A +P+KQ+PMN ++ YM+GNS+ IF
Sbjct: 50 GNSASSTSIFAKREEELQKDLLLKKAWELAYSPLKQIPMNAILAYMSGNSLQIF 103
>sp|P53073|EMC4_YEAST ER membrane protein complex subunit 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMC4 PE=1 SV=1
Length = 190
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 2 KWSVDFTSRAKSDLPAPPGYCPINNS-----VQSDVTNQTDG--------NLLIKKCWEV 48
K+ + + + LP+PPG+ ++ Q D T+QT L ++K W++
Sbjct: 17 KYIEKYNIQNSNTLPSPPGFEGNSSKGNVTRKQQDATSQTTSLAQKNQITVLQVQKAWQI 76
Query: 49 ALAPIKQVPMNIVIMYMAGNSISI 72
AL P K +PMNI + YM+G S+ I
Sbjct: 77 ALQPAKSIPMNIFMSYMSGTSLQI 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,977,051
Number of Sequences: 539616
Number of extensions: 834631
Number of successful extensions: 1630
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1620
Number of HSP's gapped (non-prelim): 10
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)