Query psy15836
Match_columns 74
No_of_seqs 105 out of 185
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 22:37:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i11_A Transcription factor SO 54.3 2.9 9.9E-05 23.8 0.2 10 57-66 8-17 (81)
2 3f27_D Transcription factor SO 53.0 3.1 0.0001 23.7 0.1 11 56-66 9-19 (83)
3 1hry_A Human SRY; DNA, DNA-bin 47.0 4.4 0.00015 22.6 0.1 10 57-66 8-17 (76)
4 1wz6_A HMG-box transcription f 45.7 4.7 0.00016 23.0 0.1 10 57-66 11-20 (82)
5 2e6o_A HMG box-containing prot 44.6 5 0.00017 23.2 0.1 10 57-66 21-30 (87)
6 4euw_A Transcription factor SO 42.0 5.8 0.0002 24.0 0.1 11 56-66 32-42 (106)
7 1j46_A SRY, sex-determining re 41.1 6.1 0.00021 22.7 0.1 10 57-66 8-17 (85)
8 2d7l_A WD repeat and HMG-box D 40.8 6.2 0.00021 23.0 0.1 10 57-66 9-18 (81)
9 3fgh_A Transcription factor A, 38.7 7 0.00024 21.3 0.1 10 57-66 6-15 (67)
10 1hme_A High mobility group pro 37.3 5.7 0.0002 22.2 -0.4 10 57-66 10-19 (77)
11 1wgf_A Upstream binding factor 36.8 7.8 0.00027 22.6 0.1 10 57-66 24-33 (90)
12 2crj_A SWI/SNF-related matrix- 35.6 8.4 0.00029 22.5 0.1 10 57-66 11-20 (92)
13 1aab_A High mobility group pro 33.5 9.5 0.00033 21.6 0.1 10 57-66 11-20 (83)
14 2cs1_A PMS1 protein homolog 1; 32.5 10 0.00034 22.1 0.1 10 57-66 11-20 (92)
15 1k99_A Upstream binding factor 32.5 10 0.00035 22.6 0.2 10 57-66 14-23 (99)
16 2eqz_A High mobility group pro 32.1 10 0.00035 21.7 0.1 10 57-66 19-28 (86)
17 2co9_A Thymus high mobility gr 30.0 11 0.00036 22.5 -0.1 10 57-66 21-30 (102)
18 1cg7_A Protein (NON histone pr 29.0 13 0.00043 21.8 0.1 10 57-66 24-33 (93)
19 2cto_A Novel protein; high mob 27.7 14 0.00047 22.3 0.2 11 57-67 14-24 (93)
20 2yuk_A Myeloid/lymphoid or mix 26.4 13 0.00044 22.4 -0.1 13 55-67 24-36 (90)
21 1v63_A Nucleolar transcription 24.9 14 0.00049 22.1 -0.1 10 57-66 12-21 (101)
22 1v64_A Nucleolar transcription 23.5 19 0.00065 21.8 0.2 10 57-66 21-30 (108)
23 2gzk_A Sex-determining region 21.7 21 0.00071 22.5 0.1 11 56-66 7-17 (159)
24 2lhj_A High mobility group pro 21.4 12 0.00041 22.0 -1.0 11 57-67 26-36 (97)
No 1
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=54.34 E-value=2.9 Score=23.83 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.9
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 8 P~naf~lf~~ 17 (81)
T 1i11_A 8 PMNAFMVWAK 17 (81)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999984
No 2
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=53.02 E-value=3.1 Score=23.70 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=9.2
Q ss_pred hhhHHHHHHhc
Q psy15836 56 VPMNIVIMYMA 66 (74)
Q Consensus 56 ipMn~fMmyMs 66 (74)
=|+|+||+|+.
T Consensus 9 rP~~af~lf~~ 19 (83)
T 3f27_D 9 RPMNAFMVWAK 19 (83)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 38999999974
No 3
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=46.96 E-value=4.4 Score=22.64 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=8.8
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|+|+||+|+.
T Consensus 8 P~~af~lf~~ 17 (76)
T 1hry_A 8 PMNAFIVWSR 17 (76)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999975
No 4
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=45.73 E-value=4.7 Score=22.95 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=8.8
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 11 P~~af~lf~~ 20 (82)
T 1wz6_A 11 PMNAFLLFCK 20 (82)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999974
No 5
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=44.57 E-value=5 Score=23.25 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=8.7
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|+|+||+|+.
T Consensus 21 P~~af~lf~~ 30 (87)
T 2e6o_A 21 PMNAFMLFAK 30 (87)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7999999985
No 6
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=42.02 E-value=5.8 Score=24.02 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=9.2
Q ss_pred hhhHHHHHHhc
Q psy15836 56 VPMNIVIMYMA 66 (74)
Q Consensus 56 ipMn~fMmyMs 66 (74)
=|||+||+|+.
T Consensus 32 RP~naf~lF~~ 42 (106)
T 4euw_A 32 RPMNAFMVWAQ 42 (106)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 38999999984
No 7
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=41.11 E-value=6.1 Score=22.71 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=8.8
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|+|+||+|+.
T Consensus 8 P~~af~lf~~ 17 (85)
T 1j46_A 8 PMNAFIVWSR 17 (85)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999975
No 8
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.82 E-value=6.2 Score=23.04 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=8.7
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 9 P~say~lF~~ 18 (81)
T 2d7l_A 9 PKTGFQMWLE 18 (81)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7999999985
No 9
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=38.74 E-value=7 Score=21.32 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=8.5
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||.||+|+.
T Consensus 6 P~say~~F~~ 15 (67)
T 3fgh_A 6 PRSAYNVYVA 15 (67)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8899999974
No 10
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=37.33 E-value=5.7 Score=22.18 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=8.6
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|+|+||+|+.
T Consensus 10 P~saf~lf~~ 19 (77)
T 1hme_A 10 PPSAFFLFCS 19 (77)
T ss_dssp CCCTTHHHHH
T ss_pred CCCHHHHHHH
Confidence 8899999974
No 11
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=36.84 E-value=7.8 Score=22.58 Aligned_cols=10 Identities=10% Similarity=0.604 Sum_probs=8.6
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||.||+|+.
T Consensus 24 P~say~lF~~ 33 (90)
T 1wgf_A 24 PVSAMFIFSE 33 (90)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7999999974
No 12
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=35.56 E-value=8.4 Score=22.47 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=8.7
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||.||+|+.
T Consensus 11 P~~af~lF~~ 20 (92)
T 2crj_A 11 PVTGYVRFLN 20 (92)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999974
No 13
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=33.47 E-value=9.5 Score=21.63 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=8.6
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 11 P~say~lF~~ 20 (83)
T 1aab_A 11 KMSSYAFFVQ 20 (83)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7899999984
No 14
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.54 E-value=10 Score=22.11 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=8.6
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 11 P~say~lF~~ 20 (92)
T 2cs1_A 11 PMSASALFVQ 20 (92)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999974
No 15
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=32.48 E-value=10 Score=22.58 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=8.6
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 14 P~saf~lF~~ 23 (99)
T 1k99_A 14 PLTPYFRFFM 23 (99)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7999999974
No 16
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.07 E-value=10 Score=21.73 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=8.4
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 19 P~say~lF~~ 28 (86)
T 2eqz_A 19 KMSAYAFFVQ 28 (86)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7899999874
No 17
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.96 E-value=11 Score=22.54 Aligned_cols=10 Identities=10% Similarity=0.544 Sum_probs=8.5
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 21 P~say~lF~~ 30 (102)
T 2co9_A 21 PVSAYALFFR 30 (102)
T ss_dssp CCCHHHHTHH
T ss_pred CCCHHHHHHH
Confidence 8999999974
No 18
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=29.05 E-value=13 Score=21.78 Aligned_cols=10 Identities=0% Similarity=0.345 Sum_probs=8.6
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|+|+||+|+.
T Consensus 24 P~saf~lF~~ 33 (93)
T 1cg7_A 24 ALSAYMFFAN 33 (93)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7999999984
No 19
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.69 E-value=14 Score=22.27 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=9.2
Q ss_pred hhHHHHHHhcC
Q psy15836 57 PMNIVIMYMAG 67 (74)
Q Consensus 57 pMn~fMmyMsG 67 (74)
|||+||.|+.-
T Consensus 14 P~sAf~lF~~e 24 (93)
T 2cto_A 14 SRNAYYFFVQE 24 (93)
T ss_dssp SCCHHHHHHHT
T ss_pred CCCHHHHHHHH
Confidence 79999999864
No 20
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=26.41 E-value=13 Score=22.44 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=10.3
Q ss_pred chhhHHHHHHhcC
Q psy15836 55 QVPMNIVIMYMAG 67 (74)
Q Consensus 55 ~ipMn~fMmyMsG 67 (74)
--|+++||+|+..
T Consensus 24 KRp~sAf~lf~~e 36 (90)
T 2yuk_A 24 EMATVAPVLYTNI 36 (90)
T ss_dssp GGCSSSHHHHHHH
T ss_pred CCCccHHHHHHHH
Confidence 3479999999864
No 21
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.89 E-value=14 Score=22.09 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=8.7
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||.|+.
T Consensus 12 P~say~lF~~ 21 (101)
T 1v63_A 12 PMNGYQKFSQ 21 (101)
T ss_dssp CSSSHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999974
No 22
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.47 E-value=19 Score=21.82 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=8.6
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 21 P~say~lF~~ 30 (108)
T 1v64_A 21 PPNSYSLYCA 30 (108)
T ss_dssp CSSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7999999974
No 23
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=21.67 E-value=21 Score=22.46 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=9.2
Q ss_pred hhhHHHHHHhc
Q psy15836 56 VPMNIVIMYMA 66 (74)
Q Consensus 56 ipMn~fMmyMs 66 (74)
-|||+||+|+.
T Consensus 7 rp~~af~~~~~ 17 (159)
T 2gzk_A 7 RPMNAFIVWSR 17 (159)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 48999999975
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=21.38 E-value=12 Score=22.00 Aligned_cols=11 Identities=0% Similarity=0.256 Sum_probs=8.9
Q ss_pred hhHHHHHHhcC
Q psy15836 57 PMNIVIMYMAG 67 (74)
Q Consensus 57 pMn~fMmyMsG 67 (74)
|+|+||+|+.-
T Consensus 26 P~say~lF~~~ 36 (97)
T 2lhj_A 26 ALSSYMFFAKE 36 (97)
T ss_dssp CCCSSTHHHHG
T ss_pred CCCHHHHHHHH
Confidence 88999999753
Done!