Query psy15836
Match_columns 74
No_of_seqs 105 out of 185
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 22:37:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15836.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15836hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j46a_ a.21.1.1 (A:) SRY {Hum 54.2 1.3 9.8E-05 24.4 0.1 10 57-66 8-17 (85)
2 d1wgfa_ a.21.1.1 (A:) Nucleola 40.7 2.9 0.00021 22.9 0.1 10 57-66 24-33 (90)
3 d1k99a_ a.21.1.1 (A:) Nucleola 37.4 3.6 0.00026 22.6 0.2 11 56-66 13-23 (91)
4 d1v63a_ a.21.1.1 (A:) Nucleola 36.3 3.3 0.00024 23.1 -0.1 15 51-66 7-21 (101)
5 d1v64a_ a.21.1.1 (A:) Nucleola 36.0 4 0.00029 23.2 0.2 10 57-66 21-30 (108)
6 d1lwma_ a.21.1.1 (A:) NHP6a {B 28.0 6.3 0.00046 21.7 0.1 10 57-66 24-33 (93)
7 d1wiga2 g.39.1.3 (A:33-73) Act 16.4 9.3 0.00068 19.2 -0.7 8 63-70 15-22 (41)
8 d2i0ka2 d.145.1.1 (A:58-273) C 12.1 50 0.0036 19.8 1.8 13 14-26 2-14 (216)
9 d1pn5a1 a.77.1.5 (A:59-151) NA 11.2 37 0.0027 18.8 0.8 18 42-59 63-80 (93)
10 d2ogqa2 d.223.1.2 (A:507-593) 11.2 9.7 0.0007 21.3 -1.8 13 60-72 14-26 (87)
No 1
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.16 E-value=1.3 Score=24.45 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=8.8
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 8 P~nay~lF~~ 17 (85)
T d1j46a_ 8 PMNAFIVWSR 17 (85)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999974
No 2
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.69 E-value=2.9 Score=22.91 Aligned_cols=10 Identities=10% Similarity=0.604 Sum_probs=8.9
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|+|.||+||.
T Consensus 24 P~say~lF~~ 33 (90)
T d1wgfa_ 24 PVSAMFIFSE 33 (90)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8999999985
No 3
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.43 E-value=3.6 Score=22.55 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=9.2
Q ss_pred hhhHHHHHHhc
Q psy15836 56 VPMNIVIMYMA 66 (74)
Q Consensus 56 ipMn~fMmyMs 66 (74)
=|+|.||+|+.
T Consensus 13 rP~say~lf~~ 23 (91)
T d1k99a_ 13 KPLTPYFRFFM 23 (91)
T ss_dssp CSCCHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 47899999985
No 4
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.27 E-value=3.3 Score=23.11 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=11.2
Q ss_pred ccccchhhHHHHHHhc
Q psy15836 51 APIKQVPMNIVIMYMA 66 (74)
Q Consensus 51 ~P~K~ipMn~fMmyMs 66 (74)
+|-| -|+|+||+|+.
T Consensus 7 ~p~K-rP~~ay~~F~~ 21 (101)
T d1v63a_ 7 GPKK-PPMNGYQKFSQ 21 (101)
T ss_dssp SSCC-CCSSSHHHHHH
T ss_pred CCCC-CCCCHHHHHHH
Confidence 4544 39999999973
No 5
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.05 E-value=4 Score=23.20 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=8.8
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|||+||+|+.
T Consensus 21 P~~ay~lF~~ 30 (108)
T d1v64a_ 21 PPNSYSLYCA 30 (108)
T ss_dssp CSSHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8999999973
No 6
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.01 E-value=6.3 Score=21.75 Aligned_cols=10 Identities=0% Similarity=0.345 Sum_probs=8.7
Q ss_pred hhHHHHHHhc
Q psy15836 57 PMNIVIMYMA 66 (74)
Q Consensus 57 pMn~fMmyMs 66 (74)
|+|.||+|+.
T Consensus 24 P~saf~lF~~ 33 (93)
T d1lwma_ 24 ALSAYMFFAN 33 (93)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8899999974
No 7
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.38 E-value=9.3 Score=19.19 Aligned_cols=8 Identities=63% Similarity=1.182 Sum_probs=5.7
Q ss_pred HHhcCCcc
Q psy15836 63 MYMAGNSI 70 (74)
Q Consensus 63 myMsGnsi 70 (74)
||+-|++|
T Consensus 15 MYLQGs~I 22 (41)
T d1wiga2 15 MYLQGSSI 22 (41)
T ss_dssp CEEETTEE
T ss_pred eeecCCce
Confidence 67777765
No 8
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]}
Probab=12.05 E-value=50 Score=19.78 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q psy15836 14 DLPAPPGYCPINN 26 (74)
Q Consensus 14 ~lp~PpGy~~~~~ 26 (74)
.+|+||+|.....
T Consensus 2 p~p~pp~~~~~~~ 14 (216)
T d2i0ka2 2 PLPTPPNFPNDIA 14 (216)
T ss_dssp CCCCCTTCCTTSC
T ss_pred CCCCCCCCCCCch
Confidence 6899999986653
No 9
>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.18 E-value=37 Score=18.75 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=15.4
Q ss_pred HHHHHHHhhccccchhhH
Q psy15836 42 IKKCWEVALAPIKQVPMN 59 (74)
Q Consensus 42 ~kkaWeiA~~P~K~ipMn 59 (74)
.+.||++++.-++.|..+
T Consensus 63 ~~~A~~vt~~il~~mn~~ 80 (93)
T d1pn5a1 63 EQRAWDLALHTWEQMGLR 80 (93)
T ss_dssp HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHcCHH
Confidence 678999999999888765
No 10
>d2ogqa2 d.223.1.2 (A:507-593) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.16 E-value=9.7 Score=21.30 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=10.5
Q ss_pred HHHHHhcCCcccc
Q psy15836 60 IVIMYMAGNSISI 72 (74)
Q Consensus 60 ~fMmyMsGnsiqI 72 (74)
++++.+|..+||+
T Consensus 14 ai~f~LSngtvQV 26 (87)
T d2ogqa2 14 AIILHLSNGSVQI 26 (87)
T ss_dssp EEEEEETTSCEEE
T ss_pred EEEEEEcCCcEEE
Confidence 4677888999998
Done!