RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15836
         (74 letters)



>gnl|CDD|219016 pfam06417, DUF1077, Protein of unknown function (DUF1077).  This
          family consists of several hypothetical eukaryotic
          proteins of unknown function.
          Length = 124

 Score = 64.6 bits (158), Expect = 2e-15
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 30 SDVTNQTDGNLLIKKCWEVALAPIKQVPMNIVIMYMAGNSISIF 73
             + +   +L +KK W++AL P K +PMN+ +MYM+GNS+ IF
Sbjct: 2  KQASKEESRHLKLKKAWDIALGPAKSLPMNLFMMYMSGNSLQIF 45


>gnl|CDD|173585 PTZ00394, PTZ00394, glucosamine-fructose-6-phosphate
           aminotransferase; Provisional.
          Length = 670

 Score = 27.1 bits (60), Expect = 0.74
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 24  INNSVQSDVTNQTDGNLLIKKCWEVALAPIKQ-----VPMNIVIMYMAGNSISI 72
           I N V S ++  T   + +    EV +A  K      V + +V + ++ +S+ +
Sbjct: 434 ITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTSQVVVLTLVALLLSSDSVRL 487


>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
           aminotransferase.
          Length = 680

 Score = 27.0 bits (60), Expect = 0.90
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 24  INNSVQSDVTNQTDGNLLIKKCWEVALAPIKQVPMNIVIMYM-----AGNSIS 71
           I N+V S ++  T   + I    E+ +A  K     IV M M       +SIS
Sbjct: 443 ITNTVGSAISRGTHCGVHINAGAEIGVASTKAYTSQIVAMTMLALALGEDSIS 495


>gnl|CDD|188706 cd08752, RGS_GRK5, Regulator of G protein signaling domain (RGS)
          found in G protein-coupled receptor kinase 5 (GRK5).
          The RGS domain is an essential part of the GRK5 (G
          protein-coupled receptor kinase 5) protein, a
          membrane-associated serine/threonine protein kinases
          which phosphorylates G protein-coupled receptors
          (GPCRs) upon agonist stimulation. This phosphorylation
          initiates beta-arrestin-mediated receptor
          desensitization, internalization, and signaling events.
          GRK5 is a member of the GRK kinase family which include
          three major subfamilies: the GRK4 subfamily (GRK4, GRK5
          and GRK6), the rhodopsin kinase or visual GRK subfamily
          (GRK1 and GRK7), and the beta-adrenergic receptor
          kinases subfamily (GRK2/GRK3).  The RGS domain of the
          GRKs has very little sequence similarity with the
          canonical RGS domain of the RGS proteins and therefore
          is often refered to as the RH (RGS Homology) domain.
          RGS proteins regulate many aspects of embryonic
          development such as glial differentiation, embryonic
          axis formation, skeletal and muscle development, cell
          migration during early embryogenesis, as well as
          apoptosis, cell proliferation, and modulation of
          cardiac development.
          Length = 123

 Score = 25.4 bits (55), Expect = 2.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 16 PAPPGYCPINNSVQSDVTNQTDGNLLIKKCWEVALAPIKQV 56
          P  P + P    V  D+ +QT+  LL K C E+  A  + V
Sbjct: 60 PKSPVFIP---QVGQDLVSQTEEKLLQKPCKELFSACTQSV 97


>gnl|CDD|148050 pfam06212, GRIM-19, GRIM-19 protein.  This family consists of
          several eukaryotic gene associated with
          retinoic-interferon-induced mortality 19 (GRIM-19)
          proteins. GRIM-19, was reported to encode a small
          protein primarily distributed in the nucleus and was
          able to promote cell death induced by IFN-# and RA. A
          bovine homologue of GRIM-19 was co-purified with
          mitochondrial NADH:ubiquinone oxidoreductase (complex
          I) in bovine heart. Therefore, its exact cellular
          localisation and function are unclear. It has now been
          discovered that GRIM-19 is a specific interacting
          protein which negatively regulates Stat3 activity.
          Length = 130

 Score = 24.2 bits (53), Expect = 6.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 9  SRAKSDLPAPPGYCPIN 25
          S  K D+P P GY PI 
Sbjct: 3  SPVKQDMPPPGGYGPIP 19


>gnl|CDD|223484 COG0407, HemE, Uroporphyrinogen-III decarboxylase [Coenzyme
          metabolism].
          Length = 352

 Score = 23.7 bits (52), Expect = 9.6
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 44 KCWEVALAPIKQVPMNIVIMY 64
             EV L P+++  ++  I++
Sbjct: 56 LAAEVTLQPVRRYGLDAAILF 76


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.133    0.428 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,500,738
Number of extensions: 240546
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 7
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)