RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15836
         (74 letters)



>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
           immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
           2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
           1p9m_C 2arw_A
          Length = 325

 Score = 27.9 bits (61), Expect = 0.27
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 2   KWSVDFTSRAKSDLPAPPGYCPINNSVQSDVTNQTDGNLL 41
           +WS +      ++  +PP    ++  +Q+  TN+ D N+L
Sbjct: 286 EWSPEAMGTPWTESRSPPAENEVSTPMQALTTNKDDDNIL 325


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.133    0.428 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,045,302
Number of extensions: 44232
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)