RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15836
         (74 letters)



>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio
           cholerae [TaxId: 666]}
          Length = 155

 Score = 23.2 bits (49), Expect = 4.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 21  YCPINNSVQSDVT 33
            C I NSV+++V 
Sbjct: 139 NCFIANSVETEVV 151


>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
          phenylalanine-repressible {Mycobacterium tuberculosis
          [TaxId: 1773]}
          Length = 462

 Score = 22.9 bits (49), Expect = 5.6
 Identities = 7/20 (35%), Positives = 8/20 (40%)

Query: 1  MKWSVDFTSRAKSDLPAPPG 20
          M W+VD        LP  P 
Sbjct: 1  MNWTVDIPIDQLPSLPPLPT 20


>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 356

 Score = 22.2 bits (46), Expect = 8.7
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 43 KKCWEVALAPIKQVPMNIVIMYM 65
          + C E+ L P+++ P++  I++ 
Sbjct: 53 EACCELTLQPLRRFPLDAAIIFS 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.428 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,280
Number of extensions: 9113
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 3
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)