Query psy15837
Match_columns 82
No_of_seqs 110 out of 1093
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:38:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 1.8E-31 3.8E-36 202.5 4.4 79 1-79 480-558 (821)
2 cd01383 MYSc_type_VIII Myosin 100.0 2.2E-31 4.7E-36 199.2 4.5 79 1-79 383-461 (677)
3 cd01387 MYSc_type_XV Myosin mo 100.0 3.8E-31 8.1E-36 197.9 4.7 79 1-79 379-457 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 5.9E-31 1.3E-35 196.7 4.6 79 1-79 380-458 (671)
5 cd01385 MYSc_type_IX Myosin mo 100.0 5.8E-31 1.2E-35 197.3 4.5 79 1-79 395-473 (692)
6 cd01384 MYSc_type_XI Myosin mo 100.0 6.7E-31 1.5E-35 196.5 4.5 79 1-79 385-463 (674)
7 cd01382 MYSc_type_VI Myosin mo 100.0 6.5E-31 1.4E-35 197.6 4.2 79 1-79 415-493 (717)
8 cd01379 MYSc_type_III Myosin m 100.0 7.7E-31 1.7E-35 195.6 4.4 79 1-79 391-469 (653)
9 cd01378 MYSc_type_I Myosin mot 100.0 1.5E-30 3.2E-35 194.7 4.7 79 1-79 384-464 (674)
10 COG5022 Myosin heavy chain [Cy 100.0 1.8E-30 4E-35 201.6 3.6 79 1-79 446-525 (1463)
11 cd01377 MYSc_type_II Myosin mo 100.0 5.4E-30 1.2E-34 192.1 4.6 79 1-79 392-471 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 7E-30 1.5E-34 191.4 4.2 78 1-79 386-463 (691)
13 smart00242 MYSc Myosin. Large 100.0 1E-29 2.2E-34 190.2 4.4 79 1-79 387-465 (677)
14 cd00124 MYSc Myosin motor doma 100.0 3.8E-29 8.2E-34 187.2 4.0 79 1-79 380-458 (679)
15 cd01386 MYSc_type_XVIII Myosin 99.9 6.8E-29 1.5E-33 187.6 3.9 79 1-79 397-490 (767)
16 PF00063 Myosin_head: Myosin h 99.9 5.3E-28 1.2E-32 180.9 3.5 79 1-79 382-461 (689)
17 KOG0161|consensus 99.9 1.3E-27 2.8E-32 190.7 2.3 78 1-79 466-544 (1930)
18 KOG0164|consensus 99.9 1.2E-26 2.7E-31 172.5 1.9 79 1-79 393-472 (1001)
19 KOG0163|consensus 99.9 1.2E-25 2.7E-30 168.3 4.2 78 1-78 469-546 (1259)
20 KOG0160|consensus 99.9 1.5E-23 3.2E-28 159.1 3.5 78 1-79 386-463 (862)
21 KOG4229|consensus 99.8 1.9E-21 4.1E-26 150.2 2.3 79 1-79 445-523 (1062)
22 KOG0162|consensus 99.8 2.4E-19 5.3E-24 134.4 2.9 71 1-71 401-472 (1106)
23 COG2153 ElaA Predicted acyltra 46.7 8.6 0.00019 24.7 0.5 28 8-35 117-144 (155)
24 PF15216 TSLP: Thymic stromal 38.5 45 0.00098 20.6 2.8 65 11-77 9-79 (124)
25 PF10875 DUF2670: Protein of u 22.0 62 0.0013 20.2 1.4 14 46-59 4-17 (139)
26 PRK00085 recO DNA repair prote 21.7 32 0.0007 22.8 0.1 43 28-71 3-45 (247)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.97 E-value=1.8e-31 Score=202.53 Aligned_cols=79 Identities=34% Similarity=0.469 Sum_probs=77.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|+|||+++|.|||+||||||++|++||++|++|
T Consensus 480 fEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~k 558 (821)
T PTZ00014 480 LEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSS 558 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.97 E-value=2.2e-31 Score=199.16 Aligned_cols=79 Identities=51% Similarity=0.892 Sum_probs=77.3
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|..|||.|..++|.||++|++||+++|.|||++|||||++|++||++|++|
T Consensus 383 fEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~k 461 (677)
T cd01383 383 FEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANK 461 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999876
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.97 E-value=3.8e-31 Score=197.90 Aligned_cols=79 Identities=51% Similarity=0.804 Sum_probs=77.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||+||||||++|++||++|+.|
T Consensus 379 fEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~k 457 (677)
T cd01387 379 FEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQK 457 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999876
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.96 E-value=5.9e-31 Score=196.69 Aligned_cols=79 Identities=47% Similarity=0.777 Sum_probs=77.3
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|..|||.|..++|.||++|++||+++|.|||++|||||++|++||++|++|
T Consensus 380 fEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~k 458 (671)
T cd01381 380 FEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEK 458 (671)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999876
No 5
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.96 E-value=5.8e-31 Score=197.26 Aligned_cols=79 Identities=56% Similarity=0.994 Sum_probs=77.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|..|||.|..++|.||++|++||+++|.|||++|||||++|++||++|+.|
T Consensus 395 fEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~k 473 (692)
T cd01385 395 FEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAK 473 (692)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999865
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.96 E-value=6.7e-31 Score=196.45 Aligned_cols=79 Identities=51% Similarity=0.793 Sum_probs=77.3
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|+.|
T Consensus 385 fEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~k 463 (674)
T cd01384 385 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQK 463 (674)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999876
No 7
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.96 E-value=6.5e-31 Score=197.56 Aligned_cols=79 Identities=39% Similarity=0.728 Sum_probs=77.0
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|.+|||+|..++|.||++|++||+++|.|||++|||||++|++||++|+.|
T Consensus 415 fEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~k 493 (717)
T cd01382 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSV 493 (717)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998865
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.96 E-value=7.7e-31 Score=195.62 Aligned_cols=79 Identities=46% Similarity=0.769 Sum_probs=77.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|+.|
T Consensus 391 fEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~k 469 (653)
T cd01379 391 FEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEK 469 (653)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999876
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.96 E-value=1.5e-30 Score=194.69 Aligned_cols=79 Identities=42% Similarity=0.754 Sum_probs=77.0
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcchhcchHhhhcc-ccccccccC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANQT-KLVYSLFKV 78 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~-~p~Gil~lLDee~~~p-k~t~~~f~~ 78 (82)
|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++ +|.|||++|||||++| ++||++|++
T Consensus 384 fEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~ 463 (674)
T cd01378 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLE 463 (674)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHH
Confidence 68999999999999999999999999999999999999999999999999999 8999999999999999 999999987
Q ss_pred C
Q psy15837 79 P 79 (82)
Q Consensus 79 ~ 79 (82)
|
T Consensus 464 k 464 (674)
T cd01378 464 K 464 (674)
T ss_pred H
Confidence 6
No 10
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.96 E-value=1.8e-30 Score=201.65 Aligned_cols=79 Identities=49% Similarity=0.906 Sum_probs=76.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~-~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
||||||||+||+||++|++|+|+.||++|.+|||.|.+|+|.||++|+|||++ .|.|||++|||||..|.|||++|..|
T Consensus 446 FEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sK 525 (1463)
T COG5022 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSK 525 (1463)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHH
Confidence 78999999999999999999999999999999999999999999999999996 47899999999999999999999876
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.96 E-value=5.4e-30 Score=192.08 Aligned_cols=79 Identities=47% Similarity=0.828 Sum_probs=76.6
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|..|||.|..++| .||++|++||+++|.|||++|||||++|++||++|++|
T Consensus 392 fEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~k 471 (693)
T cd01377 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEK 471 (693)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHH
Confidence 68999999999999999999999999999999999999999 59999999999999999999999999999999999875
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.96 E-value=7e-30 Score=191.42 Aligned_cols=78 Identities=51% Similarity=0.855 Sum_probs=75.6
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++ |.|||++|||||++|++||++|++|
T Consensus 386 fEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~k 463 (691)
T cd01380 386 FEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQK 463 (691)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHH
Confidence 68999999999999999999999999999999999999999999999999996 6999999999999999999999876
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.96 E-value=1e-29 Score=190.20 Aligned_cols=79 Identities=54% Similarity=0.954 Sum_probs=77.1
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|.+|||.|..+.|.||++|++||+++|.|||++|||||++|++||++|++|
T Consensus 387 fEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~k 465 (677)
T smart00242 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEK 465 (677)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999875
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.95 E-value=3.8e-29 Score=187.22 Aligned_cols=79 Identities=54% Similarity=0.907 Sum_probs=77.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|..|||.|..+.|.||++|++||+++|.||+++|||||++|++||++|++|
T Consensus 380 fEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~k 458 (679)
T cd00124 380 FEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEK 458 (679)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999876
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.95 E-value=6.8e-29 Score=187.61 Aligned_cols=79 Identities=32% Similarity=0.468 Sum_probs=74.1
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCC--------------CcchhcchHh
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDDQ 65 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~~p--------------~Gil~lLDee 65 (82)
|||||||||||+||++|++++|..++++|..|||+|..+.+ .||++|++||+++| .|||++||||
T Consensus 397 fEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEe 476 (767)
T cd01386 397 FEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEE 476 (767)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHh
Confidence 68999999999999999999999999999999999987665 79999999999865 5999999999
Q ss_pred hhccccccccccCC
Q psy15837 66 ANQTKLVYSLFKVP 79 (82)
Q Consensus 66 ~~~pk~t~~~f~~~ 79 (82)
|++|++||++|+.|
T Consensus 477 c~~p~~tD~~f~~k 490 (767)
T cd01386 477 ALVPGSSDDTFLER 490 (767)
T ss_pred hcCCCCcHHHHHHH
Confidence 99999999999876
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.94 E-value=5.3e-28 Score=180.85 Aligned_cols=79 Identities=53% Similarity=0.935 Sum_probs=74.7
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|.+|||.|..++| .||++|++||+++|.|||++|||||++|++||++|+.|
T Consensus 382 fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~k 461 (689)
T PF00063_consen 382 FEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEK 461 (689)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHH
T ss_pred cccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHH
Confidence 68999999999999999999999999999999999999999 99999999999999999999999999999999999764
No 17
>KOG0161|consensus
Probab=99.93 E-value=1.3e-27 Score=190.67 Aligned_cols=78 Identities=47% Similarity=0.838 Sum_probs=75.6
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
||||||||+||+||++|+++.|..++++|.+|||.|.+|+| .|-++|++||++ |+||+++|||||++|+|||.+|+.|
T Consensus 466 FEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~k 544 (1930)
T KOG0161|consen 466 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEK 544 (1930)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHH
Confidence 78999999999999999999999999999999999999999 899999999995 8899999999999999999999875
No 18
>KOG0164|consensus
Probab=99.92 E-value=1.2e-26 Score=172.55 Aligned_cols=79 Identities=42% Similarity=0.731 Sum_probs=75.8
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhcccc-ccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKL-VYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~-t~~~f~~~ 79 (82)
|||||||||||+||+.|++.+++.|++||.+|||.|.+++|.+|.-++||++.+..|||+||||||+.|+. ||.+|+.|
T Consensus 393 FEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~ 472 (1001)
T KOG0164|consen 393 FEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEK 472 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999986 89988764
No 19
>KOG0163|consensus
Probab=99.92 E-value=1.2e-25 Score=168.26 Aligned_cols=78 Identities=47% Similarity=0.854 Sum_probs=76.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKV 78 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~ 78 (82)
|||||||||||+||++|+++++..+++.|..||+.++.|.|.||++|++||+.|..||+.|||||.++|+++++||..
T Consensus 469 FEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~ 546 (1259)
T KOG0163|consen 469 FEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTA 546 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999964
No 20
>KOG0160|consensus
Probab=99.88 E-value=1.5e-23 Score=159.09 Aligned_cols=78 Identities=54% Similarity=0.864 Sum_probs=75.7
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
||||||||+||+||+.|.+|+|+.++++|..|+|.|..++|.||++|+++|+. |.|++++|||+|++|++++++|..|
T Consensus 386 feQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~K 463 (862)
T KOG0160|consen 386 FEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQK 463 (862)
T ss_pred HHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHH
Confidence 68999999999999999999999999999999999999999999999999997 9999999999999999999999766
No 21
>KOG4229|consensus
Probab=99.82 E-value=1.9e-21 Score=150.25 Aligned_cols=79 Identities=52% Similarity=0.909 Sum_probs=76.5
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||+|||+|||++|.+|.+|+|..++++|..|+|.|..+.|.||..|+++|..+|+|||.+||||+.||++|+.+.+-|
T Consensus 445 fEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k 523 (1062)
T KOG4229|consen 445 FEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLK 523 (1062)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999987754
No 22
>KOG0162|consensus
Probab=99.76 E-value=2.4e-19 Score=134.36 Aligned_cols=71 Identities=41% Similarity=0.792 Sum_probs=67.3
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcchhcchHhhhcccc
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANQTKL 71 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~-~p~Gil~lLDee~~~pk~ 71 (82)
|||+||||.||+||+.|++.+++.|+++|.+|||.|..|.|.||.-++|||+. +|.|||++|||.|...-|
T Consensus 401 FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha 472 (1106)
T KOG0162|consen 401 FEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHA 472 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999999999999999999999997 588999999999987544
No 23
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=46.67 E-value=8.6 Score=24.70 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHhhhcCCc
Q psy15837 8 YANEHLQYYFNQHVFQYEQEEYNKEGIR 35 (82)
Q Consensus 8 ~~nE~l~~~~~~~~f~~~~~ey~~Egi~ 35 (82)
-|.+.|+.+|-.+-|..-.++|.+.||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 4788999999999999999999999996
No 24
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=38.47 E-value=45 Score=20.63 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhHHHHHHhh-hcCCccccccc-CChHHHHHHHhc----CCCcchhcchHhhhcccccccccc
Q psy15837 11 EHLQYYFNQHVFQYEQEEYN-KEGIRWRHIEF-SDNTLCLQLVEG----KPNGLLCVLDDQANQTKLVYSLFK 77 (82)
Q Consensus 11 E~l~~~~~~~~f~~~~~ey~-~Egi~~~~~~~-~dn~~~l~li~~----~p~Gil~lLDee~~~pk~t~~~f~ 77 (82)
|+++.-|...+|..-.+... .-......+.+ .+...|+..|++ +..|--|+.+|. |...|.+.+.
T Consensus 9 ~kI~k~Y~~~I~~~L~~ymngtkst~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e~--Fa~rT~aaL~ 79 (124)
T PF15216_consen 9 EKIQKIYENIIFHDLLKYMNGTKSTEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKET--FANRTRAALA 79 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCccccCCchhHHHHHHHHhcCCCCCchhHHHHH--HHHHHHHHHH
Confidence 67888888777764333322 22344555545 678899988775 446888888776 5555554443
No 25
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=22.04 E-value=62 Score=20.19 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=11.0
Q ss_pred HHHHHHhcCCCcch
Q psy15837 46 LCLQLVEGKPNGLL 59 (82)
Q Consensus 46 ~~l~li~~~p~Gil 59 (82)
..-+||...|||++
T Consensus 4 alrrlIaaNPMg~f 17 (139)
T PF10875_consen 4 ALRRLIAANPMGFF 17 (139)
T ss_pred HHHHHHhhCCchhh
Confidence 45678899999875
No 26
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=21.71 E-value=32 Score=22.77 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=34.8
Q ss_pred HhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhcccc
Q psy15837 28 EYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKL 71 (82)
Q Consensus 28 ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~ 71 (82)
.++.+||.....+|.++.-++.+++. ..|+++.+---++.+++
T Consensus 3 ~~~~~giVL~~~~~~E~d~iv~l~T~-~~G~i~~~a~g~rk~ks 45 (247)
T PRK00085 3 LYRDEGIVLHTRPYGETSLIVTLFTR-EHGRVRAVAKGARRPKS 45 (247)
T ss_pred cccccEEEEecCCCcccchhhhcccc-ccCcEEEEEecCCCCcC
Confidence 35778888777888999999999995 67999988877766664
Done!