Query psy15837
Match_columns 82
No_of_seqs 110 out of 1093
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 22:38:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 8.3E-33 2.8E-37 208.2 4.0 79 1-79 464-542 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 1E-32 3.4E-37 205.8 3.4 79 1-79 398-476 (697)
3 4anj_A Unconventional myosin-V 100.0 4.8E-32 1.6E-36 208.4 4.0 79 1-79 468-546 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 7.2E-32 2.5E-36 203.3 4.4 78 1-79 449-526 (795)
5 1w9i_A Myosin II heavy chain; 100.0 1.2E-31 4.2E-36 201.4 4.2 79 1-79 466-546 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 1.1E-31 3.7E-36 202.0 3.2 78 1-79 473-551 (783)
7 1kk8_A Myosin heavy chain, str 100.0 1.9E-31 6.6E-36 201.8 3.3 78 1-79 472-550 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 5.1E-31 1.7E-35 203.3 4.1 78 1-79 449-526 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 6.3E-31 2.1E-35 201.6 3.7 79 1-79 445-526 (995)
10 1g8x_A Myosin II heavy chain f 100.0 1.3E-30 4.5E-35 200.0 4.4 79 1-79 466-546 (1010)
11 1i84_S Smooth muscle myosin he 100.0 2.5E-30 8.7E-35 200.4 3.1 78 1-79 476-557 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 66.5 1.7 5.7E-05 22.4 0.5 27 43-69 25-51 (53)
13 1mof_A Moloney murine leukemia 61.1 2.2 7.5E-05 22.1 0.4 27 43-69 27-53 (55)
14 4g2k_A General control protein 30.5 22 0.00076 21.1 1.4 28 43-70 78-105 (125)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.97 E-value=8.3e-33 Score=208.17 Aligned_cols=79 Identities=38% Similarity=0.711 Sum_probs=77.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|+|||+++|+|||+||||||++|++||++|+.|
T Consensus 464 FEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~k 542 (784)
T 2v26_A 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSA 542 (784)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.97 E-value=1e-32 Score=205.76 Aligned_cols=79 Identities=42% Similarity=0.653 Sum_probs=77.0
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|+|||+++|+|||+||||||++|++||++|+.|
T Consensus 398 FEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~k 476 (697)
T 1lkx_A 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDS 476 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999865
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.97 E-value=4.8e-32 Score=208.40 Aligned_cols=79 Identities=38% Similarity=0.711 Sum_probs=77.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|+|||+++|+|||+||||||++|++||++|+.|
T Consensus 468 FEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~k 546 (1052)
T 4anj_A 468 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSA 546 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999865
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.97 E-value=7.2e-32 Score=203.27 Aligned_cols=78 Identities=50% Similarity=0.807 Sum_probs=75.7
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..|++||.+|||+|..++|.||++|+|||+++ +|||+||||||++|++||++|+.|
T Consensus 449 FEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~k 526 (795)
T 1w7j_A 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQK 526 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHH
Confidence 689999999999999999999999999999999999999999999999999986 999999999999999999999865
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.97 E-value=1.2e-31 Score=201.39 Aligned_cols=79 Identities=46% Similarity=0.845 Sum_probs=76.1
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC-CCcchhcchHhhhccccccccccC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQANQTKLVYSLFKV 78 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~~-p~Gil~lLDee~~~pk~t~~~f~~ 78 (82)
|||||||||||+||++|++++|..|+++|.+|||.|..++| .||++|+|||+++ |+|||+||||||++|++||++|+.
T Consensus 466 FEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~ 545 (770)
T 1w9i_A 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLIT 545 (770)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHH
Confidence 68999999999999999999999999999999999999999 6999999999984 999999999999999999999987
Q ss_pred C
Q psy15837 79 P 79 (82)
Q Consensus 79 ~ 79 (82)
|
T Consensus 546 k 546 (770)
T 1w9i_A 546 K 546 (770)
T ss_dssp H
T ss_pred H
Confidence 6
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.97 E-value=1.1e-31 Score=202.02 Aligned_cols=78 Identities=47% Similarity=0.900 Sum_probs=74.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..|+++|.+|||.|..++| .||++|+|||++ |+|||+||||||++|++||++|+.|
T Consensus 473 FEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~k 551 (783)
T 4db1_A 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAK 551 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHH
Confidence 68999999999999999999999999999999999999999 699999999996 8999999999999999999999875
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.96 E-value=1.9e-31 Score=201.76 Aligned_cols=78 Identities=49% Similarity=0.901 Sum_probs=75.5
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..|++||.+|||.|..++| .||++|+|||++ |+|||+||||||++|++||++|+.|
T Consensus 472 FEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~k 550 (837)
T 1kk8_A 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDK 550 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHH
Confidence 68999999999999999999999999999999999999999 599999999996 9999999999999999999999876
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.96 E-value=5.1e-31 Score=203.31 Aligned_cols=78 Identities=50% Similarity=0.807 Sum_probs=75.6
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcchhcchHhhhccccccccccCC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANQTKLVYSLFKVP 79 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~pk~t~~~f~~~ 79 (82)
|||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++ +|||+||||||++|++||++|+.|
T Consensus 449 FEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~k 526 (1080)
T 2dfs_A 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQK 526 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHH
Confidence 689999999999999999999999999999999999999999999999999985 999999999999999999999865
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.96 E-value=6.3e-31 Score=201.62 Aligned_cols=79 Identities=47% Similarity=0.824 Sum_probs=76.2
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc--CCCcchhcchHhhhcccccccccc
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQANQTKLVYSLFK 77 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~--~p~Gil~lLDee~~~pk~t~~~f~ 77 (82)
|||||||||||+||++|++++|..|+++|.+|||.|..++| .||++|+|||++ +|+|||+||||||++|++||++|+
T Consensus 445 fEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~ 524 (995)
T 2ycu_A 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFV 524 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHH
Confidence 68999999999999999999999999999999999999999 699999999997 489999999999999999999998
Q ss_pred CC
Q psy15837 78 VP 79 (82)
Q Consensus 78 ~~ 79 (82)
.|
T Consensus 525 ~k 526 (995)
T 2ycu_A 525 EK 526 (995)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.96 E-value=1.3e-30 Score=200.04 Aligned_cols=79 Identities=46% Similarity=0.835 Sum_probs=76.0
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc-CCCcchhcchHhhhccccccccccC
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQANQTKLVYSLFKV 78 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~-~p~Gil~lLDee~~~pk~t~~~f~~ 78 (82)
|||||||||||+||++|++++|..|+++|.+|||.|..++| .||++|+|||++ +|+|||+||||||++|++||++|+.
T Consensus 466 fEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~ 545 (1010)
T 1g8x_A 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLIT 545 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHH
Confidence 68999999999999999999999999999999999999999 599999999998 4999999999999999999999987
Q ss_pred C
Q psy15837 79 P 79 (82)
Q Consensus 79 ~ 79 (82)
|
T Consensus 546 k 546 (1010)
T 1g8x_A 546 K 546 (1010)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.96 E-value=2.5e-30 Score=200.38 Aligned_cols=78 Identities=47% Similarity=0.848 Sum_probs=74.5
Q ss_pred CcchhhhhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCC---cchhcchHhhhccccccccc
Q psy15837 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPN---GLLCVLDDQANQTKLVYSLF 76 (82)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~l~li~~~p~---Gil~lLDee~~~pk~t~~~f 76 (82)
|||||||||||+||++|++++|..++++|..|||.|..|+| .||++|+|||++ |+ |||+||||||++|++||.+|
T Consensus 476 feQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~-~~~~~Gil~lLdee~~~p~~td~~~ 554 (1184)
T 1i84_S 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER-PTNPPGVLALLDEECWFPKATDTSF 554 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSC-CSSSCCHHHHHHHTTSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhC-CCCCCCchhhhhhhhCCCCCChHHH
Confidence 68999999999999999999999999999999999999999 699999999996 55 99999999999999999999
Q ss_pred cCC
Q psy15837 77 KVP 79 (82)
Q Consensus 77 ~~~ 79 (82)
+.|
T Consensus 555 ~~k 557 (1184)
T 1i84_S 555 VEK 557 (1184)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=66.49 E-value=1.7 Score=22.36 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.4
Q ss_pred ChHHHHHHHhcCCCcchhcchHhhhcc
Q psy15837 43 DNTLCLQLVEGKPNGLLCVLDDQANQT 69 (82)
Q Consensus 43 dn~~~l~li~~~p~Gil~lLDee~~~p 69 (82)
.|...+|++..+..|+=..|.|+|.|-
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~y 51 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCFW 51 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhcc
Confidence 577889999988899999999999873
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=61.15 E-value=2.2 Score=22.07 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=23.4
Q ss_pred ChHHHHHHHhcCCCcchhcchHhhhcc
Q psy15837 43 DNTLCLQLVEGKPNGLLCVLDDQANQT 69 (82)
Q Consensus 43 dn~~~l~li~~~p~Gil~lLDee~~~p 69 (82)
.|...+|++..+..|+=..|.|+|.|-
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCfy 53 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAFY 53 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhcc
Confidence 578889999988899999999999873
No 14
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=30.54 E-value=22 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=24.0
Q ss_pred ChHHHHHHHhcCCCcchhcchHhhhccc
Q psy15837 43 DNTLCLQLVEGKPNGLLCVLDDQANQTK 70 (82)
Q Consensus 43 dn~~~l~li~~~p~Gil~lLDee~~~pk 70 (82)
-|...+|++.....|+=..|.++|.|.-
T Consensus 78 QNRraLD~Lla~qGG~C~~l~e~CCfyi 105 (125)
T 4g2k_A 78 INRHAIDFLLTRWGGTCKVLGPDCSIGI 105 (125)
T ss_dssp HHHHHHHHHHGGGTCHHHHHCGGGGCCC
T ss_pred HHHHHHHHHHHHcCCcHHHhcccceeec
Confidence 4677889888888999999999999964
Done!