Query psy15838
Match_columns 399
No_of_seqs 200 out of 1233
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:39:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3674|consensus 100.0 8.2E-82 1.8E-86 634.8 16.8 349 20-398 4-363 (696)
2 COG0293 FtsJ 23S rRNA methylas 100.0 8.2E-41 1.8E-45 311.9 19.7 187 133-365 17-204 (205)
3 KOG4589|consensus 100.0 1.6E-40 3.5E-45 303.6 18.4 217 98-367 13-231 (232)
4 PF01728 FtsJ: FtsJ-like methy 100.0 6.8E-41 1.5E-45 304.9 10.1 180 141-362 1-181 (181)
5 KOG1099|consensus 100.0 3.6E-40 7.8E-45 309.1 14.6 195 134-366 14-209 (294)
6 KOG3673|consensus 100.0 1.3E-39 2.8E-44 332.3 13.3 254 83-367 180-449 (845)
7 PRK11188 rrmJ 23S rRNA methylt 100.0 5.2E-30 1.1E-34 240.6 20.6 184 135-364 25-209 (209)
8 KOG1098|consensus 100.0 1.7E-31 3.6E-36 277.1 11.4 200 135-380 18-225 (780)
9 TIGR00438 rrmJ cell division p 99.9 9.5E-22 2.1E-26 180.5 19.7 182 135-362 6-188 (188)
10 PF14314 Methyltrans_Mon: Viru 99.6 3.7E-14 8.1E-19 152.0 16.0 193 139-366 302-505 (675)
11 PRK11760 putative 23S rRNA C24 98.4 2.3E-07 5E-12 93.5 3.8 45 137-184 180-231 (357)
12 PF06460 NSP13: Coronavirus NS 98.1 3.2E-05 6.9E-10 75.2 12.4 91 268-366 119-213 (299)
13 COG1189 Predicted rRNA methyla 97.9 2.5E-05 5.5E-10 75.2 7.7 45 138-185 56-100 (245)
14 PTZ00146 fibrillarin; Provisio 97.9 9.1E-05 2E-09 73.6 11.5 130 166-345 134-272 (293)
15 PRK14902 16S rRNA methyltransf 97.4 0.0016 3.4E-08 68.0 12.7 73 269-345 319-409 (444)
16 TIGR00446 nop2p NOL1/NOP2/sun 97.1 0.0032 7E-08 61.3 10.6 65 269-335 139-217 (264)
17 PRK04266 fibrillarin; Provisio 97.1 0.0024 5.3E-08 61.1 9.3 141 166-360 74-224 (226)
18 TIGR00563 rsmB ribosomal RNA s 97.1 0.0095 2.1E-07 61.9 14.3 73 269-342 308-392 (426)
19 PRK14901 16S rRNA methyltransf 97.1 0.022 4.7E-07 59.5 16.3 65 269-335 324-402 (434)
20 PRK10901 16S rRNA methyltransf 97.0 0.027 5.9E-07 58.6 16.2 67 269-335 312-390 (427)
21 TIGR00478 tly hemolysin TlyA f 97.0 0.001 2.3E-08 63.9 5.2 42 140-184 54-95 (228)
22 PRK14903 16S rRNA methyltransf 96.5 0.046 9.9E-07 57.2 13.8 75 269-344 306-392 (431)
23 KOG2198|consensus 96.5 0.032 6.9E-07 57.1 11.9 74 268-343 234-322 (375)
24 PRK14904 16S rRNA methyltransf 96.5 0.062 1.3E-06 56.3 14.4 66 269-336 317-396 (445)
25 COG0144 Sun tRNA and rRNA cyto 96.3 0.042 9.2E-07 56.1 11.9 69 270-338 229-309 (355)
26 PRK11933 yebU rRNA (cytosine-C 96.2 0.036 7.8E-07 58.8 11.1 68 269-336 182-261 (470)
27 PRK00811 spermidine synthase; 96.1 0.038 8.2E-07 54.5 10.2 86 268-361 148-237 (283)
28 PF12847 Methyltransf_18: Meth 95.8 0.0092 2E-07 49.1 3.5 42 268-316 68-109 (112)
29 TIGR02072 BioC biotin biosynth 95.7 0.14 3.1E-06 47.3 11.6 42 269-321 97-138 (240)
30 TIGR03534 RF_mod_PrmC protein- 95.7 0.019 4.1E-07 54.2 5.7 51 297-350 196-247 (251)
31 PRK14103 trans-aconitate 2-met 95.6 0.049 1.1E-06 52.3 8.3 44 269-323 88-131 (255)
32 PRK01683 trans-aconitate 2-met 95.6 0.13 2.9E-06 49.1 11.2 41 269-320 92-132 (258)
33 PF13659 Methyltransf_26: Meth 95.6 0.008 1.7E-07 50.0 2.4 106 166-316 2-113 (117)
34 PRK09328 N5-glutamine S-adenos 95.5 0.091 2E-06 50.5 9.8 58 295-359 215-273 (275)
35 PRK10258 biotin biosynthesis p 95.5 0.044 9.6E-07 52.3 7.4 42 269-321 102-143 (251)
36 PRK04457 spermidine synthase; 95.4 0.063 1.4E-06 52.4 8.4 68 269-344 135-203 (262)
37 TIGR02752 MenG_heptapren 2-hep 95.4 0.14 3E-06 48.1 10.1 40 269-319 113-152 (231)
38 TIGR00138 gidB 16S rRNA methyl 95.3 0.7 1.5E-05 42.6 14.3 56 269-342 108-164 (181)
39 TIGR00406 prmA ribosomal prote 95.2 0.36 7.9E-06 47.6 13.1 58 269-342 224-281 (288)
40 TIGR02469 CbiT precorrin-6Y C5 95.1 0.038 8.2E-07 45.9 5.0 36 269-318 87-122 (124)
41 cd02440 AdoMet_MTases S-adenos 95.0 0.019 4.1E-07 44.4 2.8 39 269-317 65-103 (107)
42 PRK14967 putative methyltransf 94.9 0.1 2.2E-06 49.2 7.9 34 147-184 23-56 (223)
43 PLN03075 nicotianamine synthas 94.9 0.22 4.8E-06 49.8 10.4 78 269-361 194-276 (296)
44 PLN02244 tocopherol O-methyltr 94.5 0.43 9.4E-06 48.2 11.6 49 149-204 102-151 (340)
45 PRK00377 cbiT cobalt-precorrin 94.4 0.35 7.5E-06 44.7 9.9 66 269-350 110-175 (198)
46 PRK08317 hypothetical protein; 94.4 0.3 6.5E-06 45.0 9.5 40 269-319 86-125 (241)
47 PF05175 MTS: Methyltransferas 94.3 0.31 6.8E-06 44.1 9.4 66 268-344 96-161 (170)
48 PF06016 Reovirus_L2: Reovirus 94.3 0.075 1.6E-06 61.5 6.2 91 268-362 567-657 (1289)
49 TIGR00417 speE spermidine synt 94.1 0.25 5.4E-06 48.2 8.7 86 269-361 144-232 (270)
50 PRK11036 putative S-adenosyl-L 94.0 0.087 1.9E-06 50.6 5.3 41 269-320 111-151 (255)
51 PF13847 Methyltransf_31: Meth 93.8 0.017 3.7E-07 50.9 0.0 41 269-320 72-112 (152)
52 KOG1122|consensus 93.7 0.38 8.1E-06 50.3 9.5 83 269-353 311-405 (460)
53 PRK11873 arsM arsenite S-adeno 93.6 0.054 1.2E-06 52.4 3.0 38 269-317 145-182 (272)
54 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.4 0.15 3.2E-06 50.5 5.8 74 270-344 156-245 (283)
55 PF03141 Methyltransf_29: Puta 93.1 0.4 8.7E-06 51.1 8.7 141 164-360 365-505 (506)
56 PTZ00098 phosphoethanolamine N 93.0 0.12 2.6E-06 50.3 4.5 29 151-183 43-71 (263)
57 PRK11705 cyclopropane fatty ac 93.0 0.17 3.7E-06 52.2 5.7 44 269-321 227-270 (383)
58 COG1092 Predicted SAM-dependen 92.9 0.56 1.2E-05 48.8 9.2 52 268-321 288-339 (393)
59 TIGR00537 hemK_rel_arch HemK-r 92.7 0.4 8.7E-06 43.4 7.2 45 296-342 118-162 (179)
60 PRK00107 gidB 16S rRNA methylt 92.6 1.8 3.9E-05 40.2 11.5 39 269-322 111-149 (187)
61 PRK07402 precorrin-6B methylas 92.4 0.83 1.8E-05 42.0 9.0 46 301-348 125-171 (196)
62 TIGR00080 pimt protein-L-isoas 92.4 0.46 1E-05 44.5 7.3 20 166-185 79-98 (215)
63 PRK13944 protein-L-isoaspartat 92.2 0.73 1.6E-05 43.0 8.4 20 166-185 74-93 (205)
64 TIGR01177 conserved hypothetic 92.2 0.74 1.6E-05 46.2 8.9 50 269-321 247-297 (329)
65 PRK03612 spermidine synthase; 92.1 0.28 6.1E-06 52.6 6.2 65 269-341 372-440 (521)
66 COG2933 Predicted SAM-dependen 92.1 0.1 2.2E-06 51.5 2.6 44 137-182 180-229 (358)
67 COG4106 Tam Trans-aconitate me 92.0 1.5 3.3E-05 42.5 10.2 56 268-334 90-145 (257)
68 PRK11783 rlmL 23S rRNA m(2)G24 91.9 0.52 1.1E-05 52.4 8.1 48 269-316 607-654 (702)
69 PRK15068 tRNA mo(5)U34 methylt 91.7 0.35 7.7E-06 48.6 6.0 35 144-182 106-140 (322)
70 PLN02366 spermidine synthase 91.6 0.76 1.6E-05 46.2 8.3 85 269-361 164-253 (308)
71 PRK00121 trmB tRNA (guanine-N( 91.6 0.26 5.7E-06 45.9 4.7 33 166-204 42-74 (202)
72 PLN02336 phosphoethanolamine N 91.6 1.1 2.4E-05 46.9 9.9 41 269-320 331-371 (475)
73 TIGR03533 L3_gln_methyl protei 91.5 0.17 3.8E-06 49.9 3.5 24 296-319 229-252 (284)
74 COG2230 Cfa Cyclopropane fatty 91.5 1.5 3.2E-05 43.8 10.0 121 148-323 60-181 (283)
75 PRK09489 rsmC 16S ribosomal RN 91.4 0.19 4.1E-06 51.1 3.8 65 269-344 260-324 (342)
76 PRK15128 23S rRNA m(5)C1962 me 91.4 1.3 2.9E-05 46.0 10.0 65 269-336 292-356 (396)
77 PRK00517 prmA ribosomal protei 91.3 2.9 6.3E-05 40.2 11.7 56 270-341 179-235 (250)
78 COG0421 SpeE Spermidine syntha 91.0 1.1 2.4E-05 44.5 8.7 170 150-362 63-237 (282)
79 PRK08287 cobalt-precorrin-6Y C 91.0 7.8 0.00017 35.2 13.8 57 269-341 96-153 (187)
80 TIGR01934 MenG_MenH_UbiE ubiqu 91.0 0.39 8.4E-06 44.1 5.2 43 269-322 105-147 (223)
81 PRK13942 protein-L-isoaspartat 91.0 0.85 1.8E-05 42.9 7.5 20 166-185 78-97 (212)
82 TIGR00477 tehB tellurite resis 90.9 2.4 5.2E-05 39.2 10.3 30 151-184 21-50 (195)
83 PRK15001 SAM-dependent 23S rib 90.6 2.2 4.8E-05 44.2 10.7 64 269-343 297-360 (378)
84 PF01209 Ubie_methyltran: ubiE 90.6 0.62 1.3E-05 44.8 6.3 44 269-323 115-158 (233)
85 PRK11207 tellurite resistance 90.4 3.2 7E-05 38.4 10.8 17 167-183 33-49 (197)
86 PRK01581 speE spermidine synth 90.3 1.7 3.7E-05 45.0 9.5 101 269-376 225-329 (374)
87 PRK14966 unknown domain/N5-glu 90.3 2.9 6.2E-05 44.0 11.3 58 297-361 360-418 (423)
88 PRK00216 ubiE ubiquinone/menaq 90.1 3.9 8.4E-05 37.8 11.0 44 269-323 120-163 (239)
89 TIGR00452 methyltransferase, p 90.0 2 4.3E-05 43.4 9.6 34 144-181 105-138 (314)
90 PF02353 CMAS: Mycolic acid cy 89.9 1.1 2.3E-05 44.2 7.5 45 270-323 127-171 (273)
91 PRK11805 N5-glutamine S-adenos 89.9 0.28 6.1E-06 49.1 3.4 26 295-320 240-265 (307)
92 PLN02823 spermine synthase 89.9 1.3 2.9E-05 45.0 8.3 87 268-361 174-267 (336)
93 PF08241 Methyltransf_11: Meth 89.2 0.18 4E-06 39.3 1.2 38 268-316 58-95 (95)
94 PLN02233 ubiquinone biosynthes 88.8 6.8 0.00015 38.1 12.0 44 269-323 144-187 (261)
95 PRK01544 bifunctional N5-gluta 88.7 1.2 2.6E-05 47.7 7.3 50 297-349 248-298 (506)
96 TIGR03704 PrmC_rel_meth putati 88.4 2.2 4.7E-05 41.4 8.3 47 296-345 194-241 (251)
97 TIGR00536 hemK_fam HemK family 88.4 0.58 1.3E-05 46.0 4.3 58 296-360 222-281 (284)
98 PLN02490 MPBQ/MSBQ methyltrans 87.7 0.66 1.4E-05 47.3 4.4 80 269-359 177-273 (340)
99 PF03291 Pox_MCEL: mRNA cappin 87.7 0.29 6.4E-06 49.6 1.8 56 268-335 143-198 (331)
100 TIGR00091 tRNA (guanine-N(7)-) 87.6 0.68 1.5E-05 42.8 4.1 62 269-336 86-148 (194)
101 PRK05134 bifunctional 3-demeth 86.7 0.65 1.4E-05 43.6 3.4 41 269-320 113-153 (233)
102 PRK13943 protein-L-isoaspartat 85.9 3.5 7.6E-05 41.7 8.4 20 166-185 82-101 (322)
103 COG4123 Predicted O-methyltran 85.9 22 0.00049 34.8 13.6 94 269-366 114-215 (248)
104 PLN02336 phosphoethanolamine N 85.8 0.85 1.8E-05 47.8 4.1 41 269-318 102-142 (475)
105 PRK11088 rrmA 23S rRNA methylt 85.5 4.8 0.00011 39.1 9.0 20 166-185 87-106 (272)
106 PRK06922 hypothetical protein; 85.1 2.2 4.8E-05 47.2 6.9 19 166-184 420-438 (677)
107 smart00828 PKS_MT Methyltransf 85.0 3.7 7.9E-05 38.2 7.6 40 269-319 66-105 (224)
108 smart00138 MeTrc Methyltransfe 84.9 2.6 5.7E-05 41.1 6.8 42 268-318 201-242 (264)
109 PRK15451 tRNA cmo(5)U34 methyl 84.8 15 0.00032 35.2 11.8 19 166-184 58-76 (247)
110 PF10672 Methyltrans_SAM: S-ad 84.2 3.8 8.3E-05 40.9 7.7 44 268-316 193-236 (286)
111 PF08242 Methyltransf_12: Meth 83.7 0.56 1.2E-05 37.9 1.3 35 269-314 65-99 (99)
112 KOG1975|consensus 83.5 1.9 4E-05 44.0 5.1 55 270-336 196-250 (389)
113 COG2226 UbiE Methylase involve 82.9 1.5 3.2E-05 42.7 4.1 23 301-323 139-161 (238)
114 PLN02476 O-methyltransferase 82.4 8.6 0.00019 38.3 9.3 34 269-316 193-226 (278)
115 PLN02396 hexaprenyldihydroxybe 82.3 1 2.2E-05 45.6 2.7 42 269-321 197-238 (322)
116 PF12803 G-7-MTase: mRNA (guan 82.1 1.5 3.2E-05 44.6 3.8 47 138-186 276-322 (324)
117 TIGR02716 C20_methyl_CrtF C-20 81.2 17 0.00037 35.8 11.0 19 166-184 151-169 (306)
118 PRK14121 tRNA (guanine-N(7)-)- 81.1 3 6.4E-05 43.5 5.7 47 269-321 191-238 (390)
119 PRK12335 tellurite resistance 81.0 11 0.00025 36.8 9.6 18 167-184 123-140 (287)
120 PLN02781 Probable caffeoyl-CoA 79.7 12 0.00025 35.9 9.0 34 269-316 143-176 (234)
121 PRK00312 pcm protein-L-isoaspa 79.7 8.5 0.00018 35.7 7.9 19 166-184 80-98 (212)
122 COG2521 Predicted archaeal met 78.0 5.8 0.00012 39.0 6.2 158 111-343 104-276 (287)
123 COG2264 PrmA Ribosomal protein 77.5 19 0.00042 36.2 10.0 62 268-345 227-289 (300)
124 PRK07580 Mg-protoporphyrin IX 75.1 9.7 0.00021 35.3 6.9 73 101-183 10-82 (230)
125 TIGR02021 BchM-ChlM magnesium 73.9 13 0.00028 34.6 7.4 71 103-183 4-74 (219)
126 COG2227 UbiG 2-polyprenyl-3-me 72.8 7.8 0.00017 37.9 5.6 42 268-320 122-163 (243)
127 PRK00536 speE spermidine synth 71.5 8.9 0.00019 37.8 5.9 75 269-360 138-214 (262)
128 KOG1540|consensus 70.9 17 0.00037 36.1 7.6 39 300-340 196-234 (296)
129 PRK06202 hypothetical protein; 69.7 5.3 0.00011 37.6 3.8 37 166-204 62-98 (232)
130 cd00315 Cyt_C5_DNA_methylase C 68.3 2.6 5.6E-05 41.4 1.4 19 166-184 1-19 (275)
131 PRK14968 putative methyltransf 66.2 64 0.0014 28.5 9.9 72 270-344 90-172 (188)
132 PF13649 Methyltransf_25: Meth 62.3 6.2 0.00013 32.0 2.3 34 168-204 1-34 (101)
133 PRK10458 DNA cytosine methylas 61.1 37 0.00081 36.3 8.4 21 164-184 87-107 (467)
134 COG2518 Pcm Protein-L-isoaspar 60.4 20 0.00042 34.4 5.6 18 166-184 74-91 (209)
135 PF07021 MetW: Methionine bios 59.3 7.9 0.00017 36.6 2.7 37 158-204 10-46 (193)
136 PRK00274 ksgA 16S ribosomal RN 57.2 16 0.00034 35.7 4.6 19 167-185 45-63 (272)
137 COG2519 GCD14 tRNA(1-methylade 54.5 33 0.00071 33.9 6.2 75 270-362 163-251 (256)
138 PF01269 Fibrillarin: Fibrilla 54.4 5.6 0.00012 38.5 0.9 40 268-320 141-180 (229)
139 KOG1271|consensus 54.1 12 0.00026 35.6 3.0 70 268-344 134-205 (227)
140 PF13489 Methyltransf_23: Meth 53.4 7.5 0.00016 33.4 1.5 44 268-322 76-119 (161)
141 PRK00050 16S rRNA m(4)C1402 me 52.6 20 0.00042 36.1 4.4 34 149-186 8-41 (296)
142 TIGR00740 methyltransferase, p 51.5 26 0.00055 33.1 4.9 35 166-204 55-89 (239)
143 PF13679 Methyltransf_32: Meth 51.4 12 0.00027 32.6 2.5 25 164-188 25-49 (141)
144 TIGR03587 Pse_Me-ase pseudamin 50.5 20 0.00042 33.6 3.9 18 167-184 46-63 (204)
145 COG0270 Dcm Site-specific DNA 50.4 8.8 0.00019 38.6 1.6 20 165-184 3-22 (328)
146 PLN02585 magnesium protoporphy 50.2 31 0.00066 34.9 5.4 73 102-184 91-164 (315)
147 KOG3420|consensus 49.3 43 0.00092 30.9 5.6 33 145-181 33-65 (185)
148 PRK11524 putative methyltransf 49.3 66 0.0014 31.6 7.5 75 269-346 26-108 (284)
149 PF01564 Spermine_synth: Sperm 48.4 19 0.00042 34.8 3.6 86 270-362 150-238 (246)
150 PF04989 CmcI: Cephalosporin h 47.6 81 0.0018 30.2 7.5 56 234-316 90-145 (206)
151 PF06962 rRNA_methylase: Putat 45.0 25 0.00054 31.6 3.5 65 269-335 45-112 (140)
152 PF13578 Methyltransf_24: Meth 42.5 25 0.00055 28.6 3.0 36 269-316 68-103 (106)
153 TIGR02081 metW methionine bios 42.2 22 0.00048 32.5 2.8 17 167-183 16-32 (194)
154 TIGR00675 dcm DNA-methyltransf 42.2 20 0.00043 35.9 2.6 17 168-184 1-17 (315)
155 TIGR00755 ksgA dimethyladenosi 42.0 36 0.00078 32.6 4.4 20 166-185 31-50 (253)
156 PF09243 Rsm22: Mitochondrial 39.5 36 0.00079 33.4 4.0 35 149-187 22-56 (274)
157 smart00650 rADc Ribosomal RNA 39.3 41 0.00089 30.0 4.0 18 167-184 16-33 (169)
158 PF00891 Methyltransf_2: O-met 36.7 1E+02 0.0022 29.0 6.5 31 150-184 90-120 (241)
159 PF07757 AdoMet_MTase: Predict 36.6 77 0.0017 27.5 5.0 62 100-177 10-71 (112)
160 PF00107 ADH_zinc_N: Zinc-bind 36.4 32 0.00069 28.6 2.7 60 230-321 33-92 (130)
161 PF05148 Methyltransf_8: Hypot 35.6 81 0.0018 30.5 5.5 33 303-336 143-176 (219)
162 PRK13699 putative methylase; P 34.8 72 0.0016 30.5 5.1 76 268-348 18-103 (227)
163 PF03848 TehB: Tellurite resis 34.2 54 0.0012 30.9 4.1 28 151-182 21-48 (192)
164 KOG3010|consensus 33.7 2.3E+02 0.0051 28.0 8.4 56 268-335 98-154 (261)
165 PF01555 N6_N4_Mtase: DNA meth 32.4 2.1E+02 0.0046 25.7 7.7 52 294-345 32-87 (231)
166 KOG1596|consensus 32.2 58 0.0012 32.4 3.9 43 268-323 224-266 (317)
167 KOG2940|consensus 31.9 40 0.00087 33.3 2.8 45 268-323 135-179 (325)
168 PF05185 PRMT5: PRMT5 arginine 31.8 33 0.00071 36.4 2.4 45 269-322 257-301 (448)
169 PF05401 NodS: Nodulation prot 29.6 1.8E+02 0.0039 27.8 6.7 68 268-343 104-178 (201)
170 PHA03412 putative methyltransf 29.3 33 0.00071 33.6 1.7 35 167-204 52-86 (241)
171 KOG1541|consensus 29.1 1.1E+02 0.0025 30.0 5.3 88 268-359 110-201 (270)
172 PF00398 RrnaAD: Ribosomal RNA 28.9 62 0.0013 31.3 3.7 21 166-186 32-52 (262)
173 PRK14896 ksgA 16S ribosomal RN 28.4 77 0.0017 30.6 4.2 18 167-184 32-49 (258)
174 COG2890 HemK Methylase of poly 27.9 42 0.00091 33.2 2.3 51 295-348 215-267 (280)
175 PRK12428 3-alpha-hydroxysteroi 27.3 2.4E+02 0.0051 26.3 7.2 65 234-316 28-94 (241)
176 TIGR02987 met_A_Alw26 type II 27.3 51 0.0011 35.2 3.0 23 165-187 32-54 (524)
177 PF00145 DNA_methylase: C-5 cy 26.6 50 0.0011 31.9 2.5 19 166-184 1-19 (335)
178 KOG1924|consensus 26.2 1.1E+02 0.0025 34.9 5.3 59 92-151 365-429 (1102)
179 PF02384 N6_Mtase: N-6 DNA Met 26.1 51 0.0011 32.4 2.5 80 299-378 164-249 (311)
180 PLN02232 ubiquinone biosynthes 25.9 1.9E+02 0.0041 25.7 6.0 45 268-323 42-86 (160)
181 PHA03411 putative methyltransf 25.2 56 0.0012 32.7 2.6 18 167-184 67-84 (279)
182 TIGR03840 TMPT_Se_Te thiopurin 23.2 1.1E+02 0.0024 28.9 4.1 31 167-205 37-67 (213)
183 PRK11727 23S rRNA mA1618 methy 22.6 72 0.0016 32.4 2.9 35 165-205 115-149 (321)
184 PHA03108 poly(A) polymerase sm 21.9 7.4E+02 0.016 25.1 9.6 37 167-205 63-99 (300)
185 PLN02589 caffeoyl-CoA O-methyl 21.4 1.3E+02 0.0029 29.3 4.3 35 269-317 155-189 (247)
No 1
>KOG3674|consensus
Probab=100.00 E-value=8.2e-82 Score=634.80 Aligned_cols=349 Identities=37% Similarity=0.582 Sum_probs=314.6
Q ss_pred ccccccccCCCCCCCHHHHHhHHhhhhhcccceeeecCCCCCcccccccccCCCCCCcccccccccCCccchhhHHHHHH
Q psy15838 20 ASTKHSYKKKPKNFSEEALNHFNKKYQLYNASSSYKLSDGETWFSQTKWQNTQLAPTLFSHFNIKTIPSIKLENFQALKE 99 (399)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~ 99 (399)
.++--+..+.|.-|+++..+|+ ++||.|+|.|++|.+++ ||+|++++. |+|+.++|..++.|+.
T Consensus 4 rk~p~~~~~p~~~fs~~~~~d~---~~lF~k~F~y~kpl~ns------wqlp~Pdq~-------l~~e~yeF~a~~~l~~ 67 (696)
T KOG3674|consen 4 RKKPDLDGNPVNLFSEKEIKDY---YNLFIKDFNYCKPLPNS------WQLPNPDQA-------LFSEFYEFSAQTNLLT 67 (696)
T ss_pred CCCCCCCCCCccccCcchHHHH---HHHHHHhcccCCcCCCc------ccCCCchhh-------hhhhhhhHHHHhhHHH
Confidence 3455566677789999999999 99999999999999988 999984444 4555599999999999
Q ss_pred HHHHHhhhcCccchhHHHhhhcccCchhhHHHHHHhhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhH
Q psy15838 100 KLNDVKSNLNHVHLKTWHQHTNFVNRSSKVVQSVKRFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFI 179 (399)
Q Consensus 100 ~Ln~~K~~l~~~~~~~w~~ht~~~n~~~~i~~~vk~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFs 179 (399)
+||+||++|+|+.+++|++||+++|++|.+.+++|+..++|++|.||+||.||++.|++++...-.++++|||||||+||
T Consensus 68 qln~vk~kl~Dk~vdew~~HT~~~~~~g~~~~~l~n~~~ae~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFI 147 (696)
T KOG3674|consen 68 QLNMVKRKLKDKGVDEWDQHTDMMHDFGRNPRILQNYFIAENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFI 147 (696)
T ss_pred HHHHHHHHhhhccchhHHhhhhhcCccccccHHHHhhHHHHHHHHHHHHHHHHHHhcCccccccccccceeeecCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988655689999999999999
Q ss_pred HHHHHhhhccCCC--CccceeccccCCCcCCCCCCcEEeccccccccCccccCCCccccCCCChHHHHHHHHhhhhhhcc
Q psy15838 180 TSLNHYLKLHHPR--MQWDWIANTLNPHYEGNSFDEMISDDRLILGTHRKWYFGPDNTGNILVQNFVSHFKQHIGFLLIH 257 (399)
Q Consensus 180 qaln~yl~~~~~~--~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~~~~~~w~~G~d~tGDI~~~~~i~~i~~~v~~~~~~ 257 (399)
++||||++++++. +.|+|.|+|||||+|+|+...||.||++|.+|+++|.||+|++|||++-..+..+.+.++
T Consensus 148 aslnhyL~s~r~k~~~~W~W~anTLNPY~E~n~~~~mi~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~----- 222 (696)
T KOG3674|consen 148 ASLNHYLMSSRGKNMSYWKWGANTLNPYFENNSCFDMIIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVK----- 222 (696)
T ss_pred HHHHHHHHhccCCccceeeeccCccCcccccchHHHHhccchhhhccccceeeCCCCCccHHHHHHHHHHHHHHH-----
Confidence 9999999987544 999999999999999999999999999999999999999999999999887777777443
Q ss_pred CCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcC
Q psy15838 258 DTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLF 337 (399)
Q Consensus 258 ~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F 337 (399)
..+.||||||||++||+|+|++||+++.+|++||++.|+.+|+.||+||+|||+.|+..+++|||+|+++|
T Consensus 223 ---------~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~gG~filKmft~fe~cS~~lmylLnc~F 293 (696)
T KOG3674|consen 223 ---------LAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRGGRFILKMFTFFEKCSRDLMYLLNCNF 293 (696)
T ss_pred ---------hhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHhhHHHHHHHHhhH
Confidence 25789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecCCCCCCCCceEEEEEeeccCCccccccccccccchh-----h----cccccchhhhcccchhc
Q psy15838 338 TSVDLFKPATSKEGNSEIYVICRDFHSVCSQVWIYLNLPPVKK-----E----TRRYTSSAVTSIGKCVK 398 (399)
Q Consensus 338 ~~V~v~KP~aSR~~sSE~YlVc~gf~g~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~ 398 (399)
++|+++||++||++|||+||||.||++.++.-+|.....-..+ | --.+|.+|+-+.|+||.
T Consensus 294 ~~Vh~fKPatSk~GnSEvYVvCl~yK~~~~l~~Ll~~m~~~~~nd~~~~~LF~~~~IP~dFLmqhe~cc~ 363 (696)
T KOG3674|consen 294 SSVHAFKPATSKPGNSEVYVVCLGYKDHPDLPRLLGSMNMDISNDTLVMPLFAKFQIPHDFLMQHEQCCE 363 (696)
T ss_pred hhhhccccccCCCCCceEEEEecccCCCccchhhhhhhhcccccchhhccccccccCchHHHHHHHHHHH
Confidence 9999999999999999999999999999876433332211111 1 12399999999999984
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-41 Score=311.88 Aligned_cols=187 Identities=22% Similarity=0.303 Sum_probs=168.5
Q ss_pred HHhhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCC
Q psy15838 133 VKRFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFD 212 (399)
Q Consensus 133 vk~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~ 212 (399)
.+++...+|+|||+|||.||+++|+|+.++. .|+|||+|||||+|++...+.. .+
T Consensus 17 ~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~---~ViDLGAAPGgWsQva~~~~~~----------------------~~ 71 (205)
T COG0293 17 YKKAKKEGYRSRAAYKLLELNEKFKLFKPGM---VVVDLGAAPGGWSQVAAKKLGA----------------------GG 71 (205)
T ss_pred HHHHhhccccchHHHHHHHHHHhcCeecCCC---EEEEcCCCCCcHHHHHHHHhCC----------------------CC
Confidence 4556678999999999999999999999864 9999999999999988775432 22
Q ss_pred cEEeccccccccCccccCCC-ccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHH
Q psy15838 213 EMISDDRLILGTHRKWYFGP-DNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEI 291 (399)
Q Consensus 213 ~vI~dD~~~~~~~~~w~~G~-d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~ 291 (399)
.|+++|++++.+.+ |+ .++|||+++++.+.|...+. ..++|||+|||+|+++|+++.||.
T Consensus 72 ~ivavDi~p~~~~~----~V~~iq~d~~~~~~~~~l~~~l~---------------~~~~DvV~sD~ap~~~g~~~~Dh~ 132 (205)
T COG0293 72 KIVAVDILPMKPIP----GVIFLQGDITDEDTLEKLLEALG---------------GAPVDVVLSDMAPNTSGNRSVDHA 132 (205)
T ss_pred cEEEEECcccccCC----CceEEeeeccCccHHHHHHHHcC---------------CCCcceEEecCCCCcCCCccccHH
Confidence 37888888888877 55 49999999999999998542 346899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEeeccCC
Q psy15838 292 LVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDFHSV 365 (399)
Q Consensus 292 ~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~gf~g~ 365 (399)
.+..|+..++.+|+.+|++||+||+|+|++.+ +..+++.++.+|+.|+++||.+||+.|+|+|+||++|+++
T Consensus 133 r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~ 204 (205)
T COG0293 133 RSMYLCELALEFALEVLKPGGSFVAKVFQGED--FEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204 (205)
T ss_pred HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--HHHHHHHHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence 99999999999999999999999999999954 9999999999999999999999999999999999999975
No 3
>KOG4589|consensus
Probab=100.00 E-value=1.6e-40 Score=303.59 Aligned_cols=217 Identities=19% Similarity=0.278 Sum_probs=188.3
Q ss_pred HHHHHHHhhhcCccchhHHHhhhcccCchhhHHHHHHhhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCCh
Q psy15838 98 KEKLNDVKSNLNHVHLKTWHQHTNFVNRSSKVVQSVKRFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGA 177 (399)
Q Consensus 98 k~~Ln~~K~~l~~~~~~~w~~ht~~~n~~~~i~~~vk~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGg 177 (399)
+.++-+++++-+......|-+ +...|||. +++.-..||+||+|||+||+++|+++++++ +|+|+|+|||+
T Consensus 13 r~~f~~i~sr~rs~s~~~wl~-Rql~Dpy~------kkAkv~NyR~RsAFKLiEindKy~~l~p~~---~VlD~G~APGs 82 (232)
T KOG4589|consen 13 RSMFGTIGSRYRSKSLHRWLT-RQLKDPYV------KKAKVQNYRSRSAFKLIEINDKYRFLRPED---TVLDCGAAPGS 82 (232)
T ss_pred hhhccccccccccccHHHHHH-HhccCHHH------HHHHHhhhhhhhhhhheeehhhccccCCCC---EEEEccCCCCh
Confidence 445566677777788888954 33357764 445567899999999999999999999876 99999999999
Q ss_pred hHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcEEeccccccccCccccCCCc-ccc-CCCChHHHHHHHHhhhhhh
Q psy15838 178 FITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRLILGTHRKWYFGPD-NTG-NILVQNFVSHFKQHIGFLL 255 (399)
Q Consensus 178 Fsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~~~~~~w~~G~d-~tG-DI~~~~~i~~i~~~v~~~~ 255 (399)
|+|++.... || .+.++++|++..++++ |++ ++| ||+++++...|.+.+
T Consensus 83 WsQVavqr~----------------~p------~g~v~gVDllh~~p~~----Ga~~i~~~dvtdp~~~~ki~e~l---- 132 (232)
T KOG4589|consen 83 WSQVAVQRV----------------NP------NGMVLGVDLLHIEPPE----GATIIQGNDVTDPETYRKIFEAL---- 132 (232)
T ss_pred HHHHHHHhh----------------CC------CceEEEEeeeeccCCC----CcccccccccCCHHHHHHHHHhC----
Confidence 999876642 23 4568999999888877 775 777 999999999998854
Q ss_pred ccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHh
Q psy15838 256 IHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLAC 335 (399)
Q Consensus 256 ~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~ 335 (399)
.+.+||+|+|||+|+.+|....||..++.||.+++.+|+.+++|+|+||||+|++.+ ...|-..|..
T Consensus 133 -----------p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e--~~~l~r~l~~ 199 (232)
T KOG4589|consen 133 -----------PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE--EALLQRRLQA 199 (232)
T ss_pred -----------CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc--hHHHHHHHHH
Confidence 257899999999999999999999999999999999999999999999999999966 7888889999
Q ss_pred cCCeeeeecCCCCCCCCceEEEEEeeccCCcc
Q psy15838 336 LFTSVDLFKPATSKEGNSEIYVICRDFHSVCS 367 (399)
Q Consensus 336 ~F~~V~v~KP~aSR~~sSE~YlVc~gf~g~~~ 367 (399)
.|+.|+++||.+||.+|+|.|+||++|++..+
T Consensus 200 ~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~~d 231 (232)
T KOG4589|consen 200 VFTNVKKVKPDASRDESAETYLVCLNFKGNVD 231 (232)
T ss_pred HhhhcEeeCCccccccccceeeeeeeccCcCC
Confidence 99999999999999999999999999998764
No 4
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=100.00 E-value=6.8e-41 Score=304.93 Aligned_cols=180 Identities=27% Similarity=0.377 Sum_probs=146.1
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcEEecccc
Q psy15838 141 LATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRL 220 (399)
Q Consensus 141 ~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~ 220 (399)
|+|||||||+||+++|+++..+ +..++||||||||||+|++.++. .-.+.++|+||+|..+.
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~-~~~~vlDlG~aPGGws~~~~~~~-----~~~~~v~avDl~~~~~~------------ 62 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPG-KGFTVLDLGAAPGGWSQVLLQRG-----GPAGRVVAVDLGPMDPL------------ 62 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TT-TTEEEEEET-TTSHHHHHHHTST-----TTEEEEEEEESSSTGS-------------
T ss_pred CCCHHHHHHHHHHHHCCCCCcc-cccEEEEcCCcccceeeeeeecc-----cccceEEEEeccccccc------------
Confidence 7899999999999999988653 34799999999999999988865 12467899999876321
Q ss_pred ccccCccccCCC-ccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHH
Q psy15838 221 ILGTHRKWYFGP-DNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYR 299 (399)
Q Consensus 221 ~~~~~~~w~~G~-d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~ 299 (399)
+ ++ ..+|||+++++++.++..+. ...+++|||+|||+++++|+++.|+.++.+|+.+
T Consensus 63 -----~----~~~~i~~d~~~~~~~~~i~~~~~-------------~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~ 120 (181)
T PF01728_consen 63 -----Q----NVSFIQGDITNPENIKDIRKLLP-------------ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILS 120 (181)
T ss_dssp -----T----TEEBTTGGGEEEEHSHHGGGSHG-------------TTTCSESEEEE-------SSHHSSHHHHHHHHHH
T ss_pred -----c----ceeeeecccchhhHHHhhhhhcc-------------ccccCcceeccccccCCCCchhhHHHHHHHHHHH
Confidence 1 11 26999999988888777432 0136899999999999999999999999999999
Q ss_pred HHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEeec
Q psy15838 300 EVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDF 362 (399)
Q Consensus 300 el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~gf 362 (399)
++.+|+..|++||+||+|+|.+.+. . .+++.|..+|++|+++||.+||+.|+|.|+||+||
T Consensus 121 ~l~~a~~~L~~gG~~v~K~~~~~~~-~-~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 121 QLLLALELLKPGGTFVIKVFKGPEI-E-ELIYLLKRCFSKVKIVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp HHHHHHHHHCTTEEEEEEESSSTTS-H-HHHHHHHHHHHHEEEEE-TTSBTTCBEEEEESEEE
T ss_pred HHHHHHhhhcCCCEEEEEeccCccH-H-HHHHHHHhCCeEEEEEECcCCCCCccEEEEEEcCC
Confidence 9999999999999999999999774 4 99999999999999999999999999999999997
No 5
>KOG1099|consensus
Probab=100.00 E-value=3.6e-40 Score=309.14 Aligned_cols=195 Identities=24% Similarity=0.320 Sum_probs=171.0
Q ss_pred HhhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCc
Q psy15838 134 KRFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDE 213 (399)
Q Consensus 134 k~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~ 213 (399)
|.+...++|+|++|||.+||++|+|+... .++||||+|||+|||+|.+.|... +.+..| ....
T Consensus 14 RlAKe~gwRARSAFKLlqideef~i~~gv---~rvVDLCAAPGSWSQvlSrkL~~~------------~~~~~~--~~~k 76 (294)
T KOG1099|consen 14 RLAKENGWRARSAFKLLQIDEEFQIFEGV---KRVVDLCAAPGSWSQVLSRKLYKP------------LPSSGE--RDKK 76 (294)
T ss_pred HHHHhccchHHhHHHHhhhhhhhhHHhhh---hHHhhhhcCCCcHHHHHHHHHhcc------------CCCcch--hhcc
Confidence 56678899999999999999999999864 599999999999999998877532 111111 1225
Q ss_pred EEeccccccccCccccCCC-ccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHH
Q psy15838 214 MISDDRLILGTHRKWYFGP-DNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEIL 292 (399)
Q Consensus 214 vI~dD~~~~~~~~~w~~G~-d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~ 292 (399)
||++|++.|.+++ |+ ..+||||++++.+.|.++++ +.+.|||+|||+||+||.++.||.+
T Consensus 77 IVaVDLQ~MaPI~----GV~qlq~DIT~~stae~Ii~hfg---------------gekAdlVvcDGAPDvTGlHd~DEy~ 137 (294)
T KOG1099|consen 77 IVAVDLQPMAPIE----GVIQLQGDITSASTAEAIIEHFG---------------GEKADLVVCDGAPDVTGLHDLDEYV 137 (294)
T ss_pred EEEEecccCCccC----ceEEeecccCCHhHHHHHHHHhC---------------CCCccEEEeCCCCCccccccHHHHH
Confidence 8999999999988 77 59999999999999999764 4689999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEeeccCCc
Q psy15838 293 VGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDFHSVC 366 (399)
Q Consensus 293 s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~gf~g~~ 366 (399)
+.+|+.+++.++..+|++||+||-|+|.+-. +.-|-..|+.+|++|.+.||.+||..|-|.|+||.||..+.
T Consensus 138 Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~--tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~ 209 (294)
T KOG1099|consen 138 QAQLLLAALNIATCVLKPGGSFVAKIFRGRD--TSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPE 209 (294)
T ss_pred HHHHHHHHHHHHhheecCCCeeehhhhccCc--hHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCcc
Confidence 9999999999999999999999999999954 55555589999999999999999999999999999997665
No 6
>KOG3673|consensus
Probab=100.00 E-value=1.3e-39 Score=332.26 Aligned_cols=254 Identities=24% Similarity=0.368 Sum_probs=209.0
Q ss_pred cccCCccchhhHHHHHHHHHHHhhhcCccchhHHHhhhcccCchhhHHHHHHhhcchhhhHHHHHHHHHHHHhCCCCCCC
Q psy15838 83 IKTIPSIKLENFQALKEKLNDVKSNLNHVHLKTWHQHTNFVNRSSKVVQSVKRFIKPQLATQAWCKFHEIVHSYNIVPQQ 162 (399)
Q Consensus 83 ~~~~~~~~~~~l~~lk~~Ln~~K~~l~~~~~~~w~~ht~~~n~~~~i~~~vk~~~~~e~~trAw~KL~EId~~f~l~~~~ 162 (399)
+--.++..+|+-+.|.+.| +.|+.+|.++-.+-++++.+.|||+.|...+. ..||+.|+..||.-|+.+-.+
T Consensus 180 ~tiddET~fC~~~~lh~~l-~aK~VFD~l~d~e~RrARtRaNPyEtIrs~fF-------lNRAAmKmANmD~i~d~mftN 251 (845)
T KOG3673|consen 180 RTIDDETKFCSQQSLHEML-EAKNVFDLLSDKELRRARTRANPYETIRSAFF-------LNRAAMKMANMDKIYDWMFTN 251 (845)
T ss_pred eeeccccccCCHHHHHHHH-hhhhHhhhcCcHHHHHHhhcCChHHHHHHHHH-------hhHHHHHhhhHHHHHHHHhCC
Confidence 3446788999999999988 68999999999999999999999999998764 679999999999998755321
Q ss_pred --------------CCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcEEeccccccc--cCc
Q psy15838 163 --------------ENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRLILG--THR 226 (399)
Q Consensus 163 --------------~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~~--~~~ 226 (399)
+.-+++.|+|+||||||+|+..+-.++ -.++|.||.- .|+. .+ ..|... ...
T Consensus 252 pRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~-----AKGFGfTL~G---~nDF-KL---ekF~aaS~e~F 319 (845)
T KOG3673|consen 252 PRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWN-----AKGFGFTLAG---KNDF-KL---EKFTAASQEFF 319 (845)
T ss_pred CCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhc-----cccceeEecc---CCcc-ch---hhhhhcCHHhh
Confidence 234788999999999999554332211 2578899841 1221 11 112111 112
Q ss_pred cccCCCccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q psy15838 227 KWYFGPDNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALS 306 (399)
Q Consensus 227 ~w~~G~d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~ 306 (399)
.-.||++..|||+++.+|..+..++.+ .+.+.+||+.+|||++.+.|+.+.||+++.+|.+||+++||.
T Consensus 320 etfYG~k~dGdi~dp~Nidsl~~~i~~-----------~T~~~GVHf~MADGGFSVEGQeNiQEILSKqLyLCQfL~aL~ 388 (845)
T KOG3673|consen 320 ETFYGTKDDGDIMDPVNIDSLEAHISR-----------GTSGLGVHFMMADGGFSVEGQENIQEILSKQLYLCQFLVALC 388 (845)
T ss_pred hccccccCCCCcCCccchHHHHHHHhc-----------CCCCcceEEEEecCCccccchhhHHHHHHHHHHHHHHHHHhe
Confidence 236799999999999999999987642 234678999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEeeccCCcc
Q psy15838 307 LLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDFHSVCS 367 (399)
Q Consensus 307 ~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~gf~g~~~ 367 (399)
++|+||+||||+|+.|+++++.|+|+|.+||++|.++||.+|||+|||+||||+|.+..-+
T Consensus 389 IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~~~ 449 (845)
T KOG3673|consen 389 IVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKEFA 449 (845)
T ss_pred eeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999875443
No 7
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.97 E-value=5.2e-30 Score=240.63 Aligned_cols=184 Identities=21% Similarity=0.257 Sum_probs=151.1
Q ss_pred hhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcE
Q psy15838 135 RFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEM 214 (399)
Q Consensus 135 ~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~v 214 (399)
.+...+|++|++|||.||+++|++++++. ++||||||||+|++++...... ....+|++++|
T Consensus 25 ~~~~~~~~~r~~~kl~~~~~~~~~~~~~~---~VLDlG~GtG~~t~~l~~~~~~-----~~~V~aVDi~~---------- 86 (209)
T PRK11188 25 QAQKKGLRSRAWFKLDEIQQSDKLFKPGM---TVVDLGAAPGGWSQYAVTQIGD-----KGRVIACDILP---------- 86 (209)
T ss_pred HHhhcCCchhHHHhhHHHHHHhccCCCCC---EEEEEcccCCHHHHHHHHHcCC-----CceEEEEeccc----------
Confidence 34568999999999999999999888764 8999999999999977654311 01234444443
Q ss_pred EeccccccccCccccCCC-ccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHH
Q psy15838 215 ISDDRLILGTHRKWYFGP-DNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILV 293 (399)
Q Consensus 215 I~dD~~~~~~~~~w~~G~-d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s 293 (399)
+...+ |+ ..+||+++.++++.+...+ ..+++|+|+||+++++.|++..|...+
T Consensus 87 -------~~~~~----~v~~i~~D~~~~~~~~~i~~~~---------------~~~~~D~V~S~~~~~~~g~~~~d~~~~ 140 (209)
T PRK11188 87 -------MDPIV----GVDFLQGDFRDELVLKALLERV---------------GDSKVQVVMSDMAPNMSGTPAVDIPRA 140 (209)
T ss_pred -------ccCCC----CcEEEecCCCChHHHHHHHHHh---------------CCCCCCEEecCCCCccCCChHHHHHHH
Confidence 32222 23 3799999998888877733 145799999999999999888777766
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEeeccC
Q psy15838 294 GKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDFHS 364 (399)
Q Consensus 294 ~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~gf~g 364 (399)
..++..++..+..+|++||.||+|+|.+. .+..+++.++.+|++|+++||.+||..|+|+|+||+||++
T Consensus 141 ~~~~~~~L~~~~~~LkpGG~~vi~~~~~~--~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 141 MYLVELALDMCRDVLAPGGSFVVKVFQGE--GFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEecCc--CHHHHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 67788899999999999999999999994 4899999999999999999999999999999999999985
No 8
>KOG1098|consensus
Probab=99.97 E-value=1.7e-31 Score=277.14 Aligned_cols=200 Identities=20% Similarity=0.323 Sum_probs=173.5
Q ss_pred hhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcE
Q psy15838 135 RFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEM 214 (399)
Q Consensus 135 ~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~v 214 (399)
-+...+||+||+|||++|+.+|.++.+.. .+||||||||||+|++...+.. .+.|
T Consensus 18 lAke~GyrsRsaFKLlQln~ky~fl~~a~---~vlDLcaAPG~W~QVA~q~~pv----------------------~sli 72 (780)
T KOG1098|consen 18 LAKELGYRSRSAFKLLQLNKKYKFLEKAH---VVLDLCAAPGGWLQVASQSMPV----------------------GSLI 72 (780)
T ss_pred HHHHhchhHHHHHHHHHHHHHhccccccc---hheeeccCCcHHHHHHHHhCCC----------------------CceE
Confidence 34567999999999999999999999875 9999999999999987765431 2347
Q ss_pred EeccccccccCccccCCC-ccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHH
Q psy15838 215 ISDDRLILGTHRKWYFGP-DNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILV 293 (399)
Q Consensus 215 I~dD~~~~~~~~~w~~G~-d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s 293 (399)
|++|+.++.+++ ++ ..+.||+...+...++..+. ..++|+|++||+|+++|++..|...+
T Consensus 73 vGvDl~pikp~~----~c~t~v~dIttd~cr~~l~k~l~---------------t~~advVLhDgapnVg~~w~~DA~~q 133 (780)
T KOG1098|consen 73 VGVDLVPIKPIP----NCDTLVEDITTDECRSKLRKILK---------------TWKADVVLHDGAPNVGGNWVQDAFQQ 133 (780)
T ss_pred EEeeeeecccCC----ccchhhhhhhHHHHHHHHHHHHH---------------hCCCcEEeecCCCccchhHHHHHHHh
Confidence 788888777777 44 48899998887777777431 34689999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEeeccCCcc------
Q psy15838 294 GKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDFHSVCS------ 367 (399)
Q Consensus 294 ~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~gf~g~~~------ 367 (399)
+.|.+.++-+|...|+.||+||-|+|.. .....|+.++.++|.+|+..||.+||..|.|+|+||.||.++..
T Consensus 134 ~~L~l~al~LA~~~l~~~g~fvtkvfrs--~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P~~~dp~~l 211 (780)
T KOG1098|consen 134 ACLTLRALKLATEFLAKGGTFVTKVFRS--EDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAPKKVDPRLL 211 (780)
T ss_pred hHHHHHHHHHHHHHHHhcCccccccccC--CcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCccccCcccc
Confidence 9999999999999999999999999999 55899999999999999999999999999999999999999883
Q ss_pred -ccccccccccchh
Q psy15838 368 -QVWIYLNLPPVKK 380 (399)
Q Consensus 368 -~~~~~~~~~~~~~ 380 (399)
+..+|..++.+..
T Consensus 212 d~~~vf~e~~~~a~ 225 (780)
T KOG1098|consen 212 DPKLVFEEFPDGAK 225 (780)
T ss_pred CHHHHHhhcccccc
Confidence 3788888766554
No 9
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.89 E-value=9.5e-22 Score=180.47 Aligned_cols=182 Identities=19% Similarity=0.269 Sum_probs=145.4
Q ss_pred hhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcE
Q psy15838 135 RFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEM 214 (399)
Q Consensus 135 ~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~v 214 (399)
.+..++|++|++||+.|++.++..+++++ ++||+|||||+++.++...... ..+.++++++|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~~g~---~VLDiG~GtG~~~~~l~~~~~~-----~~~v~~vDis~~~-------- 69 (188)
T TIGR00438 6 KAKKEKYRSRASFKLLQLNQKFKLIKPGD---TVLDLGAAPGGWSQVAVEQVGG-----KGRVIAVDLQPMK-------- 69 (188)
T ss_pred HHhhcCCchhHHHHHHHHHHHhcccCCCC---EEEEecCCCCHHHHHHHHHhCC-----CceEEEEeccccc--------
Confidence 34567799999999999999999998865 9999999999999876554321 1135666666531
Q ss_pred EeccccccccCccccCCC-ccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHH
Q psy15838 215 ISDDRLILGTHRKWYFGP-DNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILV 293 (399)
Q Consensus 215 I~dD~~~~~~~~~w~~G~-d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s 293 (399)
..+ +. ..++|+.+...++.+...+ ...++|+|++|++++..|.+..++...
T Consensus 70 ---------~~~----~i~~~~~d~~~~~~~~~l~~~~---------------~~~~~D~V~~~~~~~~~g~~~~~~~~~ 121 (188)
T TIGR00438 70 ---------PIE----NVDFIRGDFTDEEVLNKIRERV---------------GDDKVDVVMSDAAPNISGYWDIDHLRS 121 (188)
T ss_pred ---------cCC----CceEEEeeCCChhHHHHHHHHh---------------CCCCccEEEcCCCCCCCCCccccHHHH
Confidence 001 22 2678998877777665532 134799999999998888887777666
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEeec
Q psy15838 294 GKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDF 362 (399)
Q Consensus 294 ~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~gf 362 (399)
..+....+..+..+|++||.+++.+++.. ....++..++..|..+.+.||.+||..|||+||||+||
T Consensus 122 ~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 122 IDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence 66777888999999999999999998874 47899999999999999999999999999999999997
No 10
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=99.57 E-value=3.7e-14 Score=151.97 Aligned_cols=193 Identities=19% Similarity=0.210 Sum_probs=138.0
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCC-------CCC
Q psy15838 139 PQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEG-------NSF 211 (399)
Q Consensus 139 ~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~-------n~~ 211 (399)
.+++|.|+||+..|++.+++... -++-.|.|.||-++++.++-+.. +.+=+||-..... ..+
T Consensus 302 ~Q~ATGAHYKlRsIL~~~~i~~~-----d~l~~GDGSGGita~lLR~~p~s------r~iFNSLL~~~~~~l~Gs~P~PP 370 (675)
T PF14314_consen 302 FQLATGAHYKLRSILKNLNIKYR-----DALCGGDGSGGITACLLRMNPTS------RGIFNSLLELDGSDLRGSHPSPP 370 (675)
T ss_pred hcccccchhhHHHHHHhcCCCcc-----eeEEEecCchHHHHHHHHhCccc------ceeeeccccccCCCCCCCCCCCc
Confidence 57889999999999999998875 45777888999999877643321 1222333211100 001
Q ss_pred CcEEec--ccc-ccccCccccCCCccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCch
Q psy15838 212 DEMISD--DRL-ILGTHRKWYFGPDNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGE 288 (399)
Q Consensus 212 ~~vI~d--D~~-~~~~~~~w~~G~d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~ 288 (399)
..+.+. +.- ......-| ....|+++++|++++.+... .....+|||+.||.+.
T Consensus 371 sAi~~~g~~~~Rcvn~~~~W----~~pSDLs~~~TW~YF~~l~~-------------~~~~~idLiv~DmEV~------- 426 (675)
T PF14314_consen 371 SAIMALGNDKSRCVNLDTCW----EHPSDLSDPETWKYFVSLKK-------------QHNLSIDLIVMDMEVR------- 426 (675)
T ss_pred HHHhccCcccceeecchhhh----cCccccCCccHHHHHHHHHh-------------hcCCcccEEEEeceec-------
Confidence 111100 000 00000112 47899999999999998321 1356899999999953
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCC-CHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEeeccCCc
Q psy15838 289 QEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFES-DTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDFHSVC 366 (399)
Q Consensus 289 qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~-~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~gf~g~~ 366 (399)
|...+.++-......+..+|.++|++|.|.|.+.-. ....++.+|...|++|.++.+..|...+||+|+||++++...
T Consensus 427 d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 427 DDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP 505 (675)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC
Confidence 455666777777788889999999999999997522 234799999999999999999999999999999999998766
No 11
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.37 E-value=2.3e-07 Score=93.53 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=36.0
Q ss_pred cchhhhHHHHHHHHHHHHhCCC-------CCCCCCCceEEEeccCCChhHHHHHH
Q psy15838 137 IKPQLATQAWCKFHEIVHSYNI-------VPQQENSFTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 137 ~~~e~~trAw~KL~EId~~f~l-------~~~~~~~~~vlDLceaPGgFsqaln~ 184 (399)
...+-+|||+|||.|+...|.+ +.++ .++|||||+||||++++.+
T Consensus 180 ~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g---~~vlDLGAsPGGWT~~L~~ 231 (357)
T PRK11760 180 FPADAPSRSTLKLEEAFHVFIPRDEWDERLAPG---MRAVDLGAAPGGWTYQLVR 231 (357)
T ss_pred CCCCCCChHHHHHHHHHHhcccchhhhcccCCC---CEEEEeCCCCcHHHHHHHH
Confidence 3457789999999999887753 3333 5999999999999997655
No 12
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=98.13 E-value=3.2e-05 Score=75.22 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCcccEEEecCCCCC----CCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeee
Q psy15838 268 ASHCFLVTADGSFDC----QGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLF 343 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~----sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~ 343 (399)
..++|||+|||---. .|..... ....-..+-+.-.-|+-||++.+|+=..+. ..-+|.|...|+..++|
T Consensus 119 ~~k~DlIiSDmYd~~~k~~~~~n~~~----~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw---~~~Lyel~~~F~~wt~F 191 (299)
T PF06460_consen 119 PDKFDLIISDMYDGRTKNCDGENNSK----EGFFTYLCGFIKEKLALGGSVAIKITEHSW---NAQLYELMGYFSWWTCF 191 (299)
T ss_dssp SS-EEEEEE----TTS-SS-S----------THHHHHHHHHHHHEEEEEEEEEEE-SSS-----HHHHHHHTTEEEEEEE
T ss_pred CCcccEEEEecccccccccccccCCc----cccHHHHHHHHHhhhhcCceEEEEeecccc---cHHHHHHHhhcccEEEE
Confidence 457999999998322 2221111 123444566777899999999999976633 56678888889999999
Q ss_pred cCCCCCCCCceEEEEEeeccCCc
Q psy15838 344 KPATSKEGNSEIYVICRDFHSVC 366 (399)
Q Consensus 344 KP~aSR~~sSE~YlVc~gf~g~~ 366 (399)
.. +-...|||.++||.+|.|..
T Consensus 192 cT-~VNtSSSEaFLigiNYLg~~ 213 (299)
T PF06460_consen 192 CT-AVNTSSSEAFLIGINYLGKF 213 (299)
T ss_dssp EE-GGGTTSS-EEEEEEEE-SS-
T ss_pred ec-ccCccccceeEEeeeccCcc
Confidence 87 56778999999999999983
No 13
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=2.5e-05 Score=75.17 Aligned_cols=45 Identities=9% Similarity=0.227 Sum_probs=40.7
Q ss_pred chhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHh
Q psy15838 138 KPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHY 185 (399)
Q Consensus 138 ~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~y 185 (399)
...|+||+++||..+++.|++-..+. .++|+|+..|||++++.+.
T Consensus 56 ~~~yVSRG~~KL~~ale~F~l~~k~k---v~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 56 EQPYVSRGGLKLEKALEEFELDVKGK---VVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred CcCccccHHHHHHHHHHhcCcCCCCC---EEEEecCCCccHHHHHHHc
Confidence 46899999999999999999988764 9999999999999987663
No 14
>PTZ00146 fibrillarin; Provisional
Probab=97.92 E-value=9.1e-05 Score=73.61 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=69.8
Q ss_pred ceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcEEecccccc-ccCccccCCCccccCCCChHHH
Q psy15838 166 FTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRLIL-GTHRKWYFGPDNTGNILVQNFV 244 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~-~~~~~w~~G~d~tGDI~~~~~i 244 (399)
.+|||||||||.|++.+...+... -..+|+++.|-. . .|++.+ ...++.. .+.+|++++...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~-----G~VyAVD~s~r~--------~-~dLl~~ak~r~NI~---~I~~Da~~p~~y 196 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPE-----GVVYAVEFSHRS--------G-RDLTNMAKKRPNIV---PIIEDARYPQKY 196 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCC-----CEEEEEECcHHH--------H-HHHHHHhhhcCCCE---EEECCccChhhh
Confidence 499999999999999877655321 124455443210 0 000000 0001111 267787764321
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCC
Q psy15838 245 SHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFES 324 (399)
Q Consensus 245 ~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~ 324 (399)
. . ....||+|++|++. ++ |..+ .. ..|..+|++||.||+++-.....
T Consensus 197 ~---~-----------------~~~~vDvV~~Dva~-----pd-q~~i----l~---~na~r~LKpGG~~vI~ika~~id 243 (293)
T PTZ00146 197 R---M-----------------LVPMVDVIFADVAQ-----PD-QARI----VA---LNAQYFLKNGGHFIISIKANCID 243 (293)
T ss_pred h---c-----------------ccCCCCEEEEeCCC-----cc-hHHH----HH---HHHHHhccCCCEEEEEEeccccc
Confidence 1 1 02359999999962 22 1111 11 12667899999999975544322
Q ss_pred C---HHHH----HHHHHhc-CCeeeeecC
Q psy15838 325 D---TICL----MYLLACL-FTSVDLFKP 345 (399)
Q Consensus 325 ~---t~~L----l~lL~~~-F~~V~v~KP 345 (399)
. ...+ +..|... |+.+..+..
T Consensus 244 ~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 244 STAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 2 1222 3556665 887776654
No 15
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.44 E-value=0.0016 Score=68.03 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=45.2
Q ss_pred CcccEEEecCCCCCCCCCc-------------hhHHHHHHHHHHHHHHHHhccCCCCEEE---EeEccCCCCCHHHHHHH
Q psy15838 269 SHCFLVTADGSFDCQGNPG-------------EQEILVGKLHYREVQIALSLLHNGGNLV---IKIFTIFESDTICLMYL 332 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~-------------~qe~~s~~L~~~el~~Al~~Lr~GG~fV---lK~F~~~e~~t~~Ll~l 332 (399)
+.+|+|++|+- |+|... .+-.....+....+..|..+|++||.+| |+++... ....+...
T Consensus 319 ~~fD~Vl~D~P--csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E--ne~vv~~~ 394 (444)
T PRK14902 319 EKFDKILVDAP--CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE--NEEVIEAF 394 (444)
T ss_pred ccCCEEEEcCC--CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh--hHHHHHHH
Confidence 46999999964 444211 1112234566677888999999999999 5655542 23344455
Q ss_pred HHh--cCCeeeeecC
Q psy15838 333 LAC--LFTSVDLFKP 345 (399)
Q Consensus 333 L~~--~F~~V~v~KP 345 (399)
|.. .|+.+.+.+|
T Consensus 395 l~~~~~~~~~~~~~~ 409 (444)
T PRK14902 395 LEEHPEFELVPLQHE 409 (444)
T ss_pred HHhCCCcEEeccccc
Confidence 665 3665555544
No 16
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.15 E-value=0.0032 Score=61.28 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=38.8
Q ss_pred CcccEEEecCCCCCCCC------C------ch-hHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHH-HHH
Q psy15838 269 SHCFLVTADGSFDCQGN------P------GE-QEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMY-LLA 334 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~------~------~~-qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~-lL~ 334 (399)
+.+|.|+.|.- |+|. | .. +-.....+....+..|..+|++||.+|.=+-+........++. .|.
T Consensus 139 ~~fD~Vl~D~P--csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 139 PKFDAILLDAP--CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred cCCCEEEEcCC--CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH
Confidence 35999999954 4442 1 11 1112345666677889999999999985554443222244554 444
Q ss_pred h
Q psy15838 335 C 335 (399)
Q Consensus 335 ~ 335 (399)
.
T Consensus 217 ~ 217 (264)
T TIGR00446 217 K 217 (264)
T ss_pred h
Confidence 4
No 17
>PRK04266 fibrillarin; Provisional
Probab=97.13 E-value=0.0024 Score=61.12 Aligned_cols=141 Identities=14% Similarity=0.112 Sum_probs=73.3
Q ss_pred ceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcEEecccc-ccccCccccCCC-ccccCCCChHH
Q psy15838 166 FTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRL-ILGTHRKWYFGP-DNTGNILVQNF 243 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~-~~~~~~~w~~G~-d~tGDI~~~~~ 243 (399)
.+++|+|||||+|+..+..++. . ...+|+++.|. |+.. .. .....+ ++ ...||+.++..
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-~-----g~V~avD~~~~--------ml~~-l~~~a~~~~----nv~~i~~D~~~~~~ 134 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-E-----GVVYAVEFAPR--------PMRE-LLEVAEERK----NIIPILADARKPER 134 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-C-----CeEEEEECCHH--------HHHH-HHHHhhhcC----CcEEEECCCCCcch
Confidence 3999999999999998766542 1 13455555441 0000 00 000001 11 25777765321
Q ss_pred HHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC-
Q psy15838 244 VSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF- 322 (399)
Q Consensus 244 i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~- 322 (399)
...+ ...+|+|++|++. ++ + ....+..+..+|+|||.+|+=+....
T Consensus 135 ~~~l--------------------~~~~D~i~~d~~~-----p~-~-------~~~~L~~~~r~LKpGG~lvI~v~~~~~ 181 (226)
T PRK04266 135 YAHV--------------------VEKVDVIYQDVAQ-----PN-Q-------AEIAIDNAEFFLKDGGYLLLAIKARSI 181 (226)
T ss_pred hhhc--------------------cccCCEEEECCCC-----hh-H-------HHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 1111 1349999999762 11 1 11234456778999999998333110
Q ss_pred ----C--CCHHHHHHHHHhc-CCeeeeecCCCCCCCCceEEEEEe
Q psy15838 323 ----E--SDTICLMYLLACL-FTSVDLFKPATSKEGNSEIYVICR 360 (399)
Q Consensus 323 ----e--~~t~~Ll~lL~~~-F~~V~v~KP~aSR~~sSE~YlVc~ 360 (399)
+ ..+...+..|... |+.+.+.-. +.-...+..+|++
T Consensus 182 d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l--~p~~~~h~~~v~~ 224 (226)
T PRK04266 182 DVTKDPKEIFKEEIRKLEEGGFEILEVVDL--EPYHKDHAAVVAR 224 (226)
T ss_pred cCcCCHHHHHHHHHHHHHHcCCeEEEEEcC--CCCcCCeEEEEEE
Confidence 0 1122345656553 887776654 2223355666664
No 18
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.12 E-value=0.0095 Score=61.93 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=46.5
Q ss_pred CcccEEEecCCCCCCCC----Cc-------hhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHH-HHHhc
Q psy15838 269 SHCFLVTADGSFDCQGN----PG-------EQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMY-LLACL 336 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~----~~-------~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~-lL~~~ 336 (399)
..+|.|+.|+--..+|. |+ .+-.-...+....+.-|..+|+|||.+|.=+.+.........+. .|..
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~- 386 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE- 386 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh-
Confidence 46999999976554442 21 11112345677777789999999999998888876333455554 4443
Q ss_pred CCeeee
Q psy15838 337 FTSVDL 342 (399)
Q Consensus 337 F~~V~v 342 (399)
+..+.+
T Consensus 387 ~~~~~~ 392 (426)
T TIGR00563 387 HPDFPF 392 (426)
T ss_pred CCCCee
Confidence 443333
No 19
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.06 E-value=0.022 Score=59.48 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=41.0
Q ss_pred CcccEEEecCCCCCCCC------Cc-------hhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC-CCHHHHHHHHH
Q psy15838 269 SHCFLVTADGSFDCQGN------PG-------EQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE-SDTICLMYLLA 334 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~------~~-------~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e-~~t~~Ll~lL~ 334 (399)
+.||.|+.|.- |+|. ++ .+-.....+....+..|..+|++||.+|.=+.+... .....+.+.|.
T Consensus 324 ~~fD~Vl~DaP--CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~ 401 (434)
T PRK14901 324 GYFDRILLDAP--CSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA 401 (434)
T ss_pred ccCCEEEEeCC--CCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence 46999999975 4431 11 111123455677788899999999999976655542 23344555666
Q ss_pred h
Q psy15838 335 C 335 (399)
Q Consensus 335 ~ 335 (399)
.
T Consensus 402 ~ 402 (434)
T PRK14901 402 R 402 (434)
T ss_pred h
Confidence 5
No 20
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.98 E-value=0.027 Score=58.60 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=40.8
Q ss_pred CcccEEEecCCCCCCCC----Cc-------hhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC-CCHHHHHHHHHh
Q psy15838 269 SHCFLVTADGSFDCQGN----PG-------EQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE-SDTICLMYLLAC 335 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~----~~-------~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e-~~t~~Ll~lL~~ 335 (399)
..+|+|++|.-...+|. ++ .+-.....+....+..|..+|+|||.+|.=+.+.+. .....+...+..
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 46999999987554442 11 111122355667778899999999999955544332 223444455654
No 21
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.97 E-value=0.001 Score=63.87 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHH
Q psy15838 140 QLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 140 e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~ 184 (399)
-|++|+++||.++++.+++...+ .+++|+||+||+|+.++..
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~---~~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKN---KIVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCC---CEEEEcccCCCHHHHHHHH
Confidence 39999999999999999874443 3899999999999997655
No 22
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.52 E-value=0.046 Score=57.20 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=45.4
Q ss_pred CcccEEEecCCCCCCCC----Cch-------hHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHH-HHHHhc
Q psy15838 269 SHCFLVTADGSFDCQGN----PGE-------QEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLM-YLLACL 336 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~----~~~-------qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll-~lL~~~ 336 (399)
+.||+|++|.--...|. |+. +-.....+....+..|..+|++||.+|.=+-+.........+ +.|..
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~- 384 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE- 384 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh-
Confidence 46999999965443442 111 111223456677788999999999999888886633344444 45544
Q ss_pred CCeeeeec
Q psy15838 337 FTSVDLFK 344 (399)
Q Consensus 337 F~~V~v~K 344 (399)
+....+..
T Consensus 385 ~~~~~~~~ 392 (431)
T PRK14903 385 QKDAEVID 392 (431)
T ss_pred CCCcEEec
Confidence 33444433
No 23
>KOG2198|consensus
Probab=96.49 E-value=0.032 Score=57.10 Aligned_cols=74 Identities=23% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCcccEEEecCCCCCCCCC-------chhH-HHH------HHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHH-H
Q psy15838 268 ASHCFLVTADGSFDCQGNP-------GEQE-ILV------GKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMY-L 332 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~-------~~qe-~~s------~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~-l 332 (399)
.-.||=|++|- .|+|+. -.++ ..+ -.|.+.-+.-++.+|++||.+|--+=.+....-..++. .
T Consensus 234 ~~~fDrVLvDV--PCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~ 311 (375)
T KOG2198|consen 234 QLKFDRVLVDV--PCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEA 311 (375)
T ss_pred hhhcceeEEec--ccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHH
Confidence 34699999994 455532 1122 122 23455556678899999999997766665433344443 5
Q ss_pred HHhcCCeeeee
Q psy15838 333 LACLFTSVDLF 343 (399)
Q Consensus 333 L~~~F~~V~v~ 343 (399)
|+.+...+.+.
T Consensus 312 L~~~~~~~~lv 322 (375)
T KOG2198|consen 312 LQKVGGAVELV 322 (375)
T ss_pred HHHhcCcccce
Confidence 77777766554
No 24
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.47 E-value=0.062 Score=56.28 Aligned_cols=66 Identities=23% Similarity=0.198 Sum_probs=41.4
Q ss_pred CcccEEEecCCCCCCCCC------c-------hhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHH-HHHH
Q psy15838 269 SHCFLVTADGSFDCQGNP------G-------EQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLM-YLLA 334 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~------~-------~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll-~lL~ 334 (399)
..+|+|+.|. .|+|.. + .+-.....+....+..|..+|++||.+|.=+.+.........+ +.|.
T Consensus 317 ~~fD~Vl~D~--Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 317 EQPDAILLDA--PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred CCCCEEEEcC--CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 4699999994 344321 1 1111123456667888999999999999988877632234444 5566
Q ss_pred hc
Q psy15838 335 CL 336 (399)
Q Consensus 335 ~~ 336 (399)
.+
T Consensus 395 ~~ 396 (445)
T PRK14904 395 RH 396 (445)
T ss_pred hC
Confidence 53
No 25
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.042 Score=56.07 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=46.9
Q ss_pred cccEEEecCCCCCCCC----Cc-------hhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC-CCCHHHHHHHHHhcC
Q psy15838 270 HCFLVTADGSFDCQGN----PG-------EQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF-ESDTICLMYLLACLF 337 (399)
Q Consensus 270 ~vDLV~ADGs~d~sg~----~~-------~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~-e~~t~~Ll~lL~~~F 337 (399)
+||.|+.|.-=..+|. |+ .+-.-...|...-|..|+.+|++||.+|-=+=+.. +....-+-+.|....
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence 5999999965333331 11 12333567888888999999999999997776655 444555657777753
Q ss_pred C
Q psy15838 338 T 338 (399)
Q Consensus 338 ~ 338 (399)
+
T Consensus 309 ~ 309 (355)
T COG0144 309 D 309 (355)
T ss_pred C
Confidence 3
No 26
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.24 E-value=0.036 Score=58.75 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=39.6
Q ss_pred CcccEEEecCCCCCCCC----Cc-------hhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHH-HHHHHHhc
Q psy15838 269 SHCFLVTADGSFDCQGN----PG-------EQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTIC-LMYLLACL 336 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~----~~-------~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~-Ll~lL~~~ 336 (399)
..||.|+.|.-=.-.|. |+ .+-.....+...-+..|..+|++||.+|-=+-+.....-.. +-++|..+
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 46999999964332231 11 11113456777777889999999998865554433122223 34556653
No 27
>PRK00811 spermidine synthase; Provisional
Probab=96.15 E-value=0.038 Score=54.51 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHH-HHHHHhccCCCCEEEEeEccCC--CCCHHHHHHHHHhcCCeeeeec
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYRE-VQIALSLLHNGGNLVIKIFTIF--ESDTICLMYLLACLFTSVDLFK 344 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~e-l~~Al~~Lr~GG~fVlK~F~~~--e~~t~~Ll~lL~~~F~~V~v~K 344 (399)
.+++|+|++|..... +. .. .|...+ +..+...|++||.||+=.-... ......+...|+..|..|..+.
T Consensus 148 ~~~yDvIi~D~~dp~-~~-~~------~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~ 219 (283)
T PRK00811 148 ENSFDVIIVDSTDPV-GP-AE------GLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQ 219 (283)
T ss_pred CCcccEEEECCCCCC-Cc-hh------hhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEE
Confidence 357999999986543 21 11 122222 2346689999999997432211 1235567788999999999887
Q ss_pred C-CCCCCCCceEEEEEee
Q psy15838 345 P-ATSKEGNSEIYVICRD 361 (399)
Q Consensus 345 P-~aSR~~sSE~YlVc~g 361 (399)
- ..|.++..-.|++|..
T Consensus 220 ~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 220 AAIPTYPSGLWSFTFASK 237 (283)
T ss_pred eECCcccCchheeEEeec
Confidence 3 4456666667888865
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.80 E-value=0.0092 Score=49.11 Aligned_cols=42 Identities=29% Similarity=0.232 Sum_probs=25.5
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVI 316 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl 316 (399)
..++|+|++++ .........+ -....+..+...|+|||.+|+
T Consensus 68 ~~~~D~v~~~~-~~~~~~~~~~------~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 68 LEPFDLVICSG-FTLHFLLPLD------ERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp SSCEEEEEECS-GSGGGCCHHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCEEEECC-Cccccccchh------HHHHHHHHHHHhcCCCcEEEE
Confidence 35699999999 3211111111 122224456689999999997
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.73 E-value=0.14 Score=47.31 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=29.6
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTI 321 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~ 321 (399)
..+|+|++.+......++ ...+.-+..+|++||.+++-.+..
T Consensus 97 ~~fD~vi~~~~l~~~~~~-----------~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 97 SSFDLIVSNLALQWCDDL-----------SQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CceeEEEEhhhhhhccCH-----------HHHHHHHHHHcCCCcEEEEEeCCc
Confidence 469999999876543221 123455677999999999987654
No 30
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.71 E-value=0.019 Score=54.23 Aligned_cols=51 Identities=25% Similarity=0.228 Sum_probs=34.4
Q ss_pred HHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHH-hcCCeeeeecCCCCCC
Q psy15838 297 HYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLA-CLFTSVDLFKPATSKE 350 (399)
Q Consensus 297 ~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~-~~F~~V~v~KP~aSR~ 350 (399)
....+..+..+|++||.+++=+-.. ....+...|. .-|+.|.++|....+.
T Consensus 196 ~~~~i~~~~~~L~~gG~~~~~~~~~---~~~~~~~~l~~~gf~~v~~~~d~~~~~ 247 (251)
T TIGR03534 196 YRRIIAQAPRLLKPGGWLLLEIGYD---QGEAVRALFEAAGFADVETRKDLAGKD 247 (251)
T ss_pred HHHHHHHHHHhcccCCEEEEEECcc---HHHHHHHHHHhCCCCceEEEeCCCCCc
Confidence 3455667888999999999854221 2344555444 4799999998877654
No 31
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.63 E-value=0.049 Score=52.31 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=29.4
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
..+|+|++......-. +.. ..+.-+...|+|||.|++-+...++
T Consensus 88 ~~fD~v~~~~~l~~~~--d~~---------~~l~~~~~~LkpgG~l~~~~~~~~~ 131 (255)
T PRK14103 88 PDTDVVVSNAALQWVP--EHA---------DLLVRWVDELAPGSWIAVQVPGNFD 131 (255)
T ss_pred CCceEEEEehhhhhCC--CHH---------HHHHHHHHhCCCCcEEEEEcCCCcC
Confidence 4699999988765332 221 1233456889999999998765443
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.61 E-value=0.13 Score=49.07 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=28.1
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEcc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFT 320 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~ 320 (399)
.++|+|++..+...-. +. ...+.-+..+|++||.|++-+..
T Consensus 92 ~~fD~v~~~~~l~~~~--d~---------~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 92 QALDLIFANASLQWLP--DH---------LELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCccEEEEccChhhCC--CH---------HHHHHHHHHhcCCCcEEEEECCC
Confidence 3699999998875432 21 12344456789999999996544
No 33
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.59 E-value=0.008 Score=49.99 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=57.9
Q ss_pred ceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcEEeccccccccCccccCCC-----ccccCCCC
Q psy15838 166 FTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRLILGTHRKWYFGP-----DNTGNILV 240 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~~~~~~w~~G~-----d~tGDI~~ 240 (399)
.+|+|+|+|.|.++-++.+.. .++.+|+++||..-. ++ + ... +..+. -..||+++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-------~~~~~gvdi~~~~~~------~a--~---~~~--~~~~~~~~~~~~~~D~~~ 61 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-------AARVTGVDIDPEAVE------LA--R---RNL--PRNGLDDRVEVIVGDARD 61 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-------TCEEEEEESSHHHHH------HH--H---HHC--HHCTTTTTEEEEESHHHH
T ss_pred CEEEEcCcchHHHHHHHHHHC-------CCeEEEEEECHHHHH------HH--H---HHH--HHccCCceEEEEECchhh
Confidence 489999999999998876653 245677777764200 00 0 000 01121 14555422
Q ss_pred hHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCC-CCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE
Q psy15838 241 QNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQ-GNPGEQEILVGKLHYREVQIALSLLHNGGNLVI 316 (399)
Q Consensus 241 ~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~s-g~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl 316 (399)
+...+ ..+++|+|++|--.-.. +..... .++...-+..|..+|++||.+++
T Consensus 62 ------~~~~~---------------~~~~~D~Iv~npP~~~~~~~~~~~----~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 62 ------LPEPL---------------PDGKFDLIVTNPPYGPRSGDKAAL----RRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp ------HHHTC---------------TTT-EEEEEE--STTSBTT----G----GCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------chhhc---------------cCceeEEEEECCCCccccccchhh----HHHHHHHHHHHHHHcCCCeEEEE
Confidence 11110 24679999988665422 111111 12555667788999999999986
No 34
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.53 E-value=0.091 Score=50.49 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHH-hcCCeeeeecCCCCCCCCceEEEEE
Q psy15838 295 KLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLA-CLFTSVDLFKPATSKEGNSEIYVIC 359 (399)
Q Consensus 295 ~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~-~~F~~V~v~KP~aSR~~sSE~YlVc 359 (399)
.....-+.-|..+|++||.+++-+ +. .....+..++. .-|..|.++|..+. .++++++
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~--g~-~~~~~~~~~l~~~gf~~v~~~~d~~~----~~r~~~~ 273 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI--GY-DQGEAVRALLAAAGFADVETRKDLAG----RDRVVLG 273 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE--Cc-hHHHHHHHHHHhCCCceeEEecCCCC----CceEEEE
Confidence 344555666789999999999854 21 22344555554 35888999886553 3566665
No 35
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.49 E-value=0.044 Score=52.25 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=29.3
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTI 321 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~ 321 (399)
..+|+|++..+.....+ . ...+.-+..+|++||.+++-.|..
T Consensus 102 ~~fD~V~s~~~l~~~~d--~---------~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGN--L---------STALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CcEEEEEECchhhhcCC--H---------HHHHHHHHHHcCCCeEEEEEeCCC
Confidence 46999999877643221 1 123344568999999999988775
No 36
>PRK04457 spermidine synthase; Provisional
Probab=95.44 E-value=0.063 Score=52.43 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=43.9
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCe-eeeec
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTS-VDLFK 344 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~-V~v~K 344 (399)
.++|+|+.|+- +..+.+.. +. ...-+..+...|++||.+++=++... .....++..|+..|.. +.+++
T Consensus 135 ~~yD~I~~D~~-~~~~~~~~---l~---t~efl~~~~~~L~pgGvlvin~~~~~-~~~~~~l~~l~~~F~~~~~~~~ 203 (262)
T PRK04457 135 HSTDVILVDGF-DGEGIIDA---LC---TQPFFDDCRNALSSDGIFVVNLWSRD-KRYDRYLERLESSFEGRVLELP 203 (262)
T ss_pred CCCCEEEEeCC-CCCCCccc---cC---cHHHHHHHHHhcCCCcEEEEEcCCCc-hhHHHHHHHHHHhcCCcEEEEe
Confidence 46999999963 32232211 11 12333456778999999999766543 3457788899999984 56654
No 37
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.36 E-value=0.14 Score=48.06 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=26.2
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIF 319 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F 319 (399)
..+|+|++....... ++.+ ..+..+..+|++||.+|+=-+
T Consensus 113 ~~fD~V~~~~~l~~~--~~~~---------~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRNV--PDYM---------QVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEecccccC--CCHH---------HHHHHHHHHcCcCeEEEEEEC
Confidence 479999987654322 2221 234457789999999987443
No 38
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.26 E-value=0.7 Score=42.57 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=32.9
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHH-HhcCCeeee
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLL-ACLFTSVDL 342 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL-~~~F~~V~v 342 (399)
+.+|+|+|++.. +... .+..+.++|++||.+++=.-. .....+..+. ++++..+..
T Consensus 108 ~~fD~I~s~~~~------~~~~---------~~~~~~~~LkpgG~lvi~~~~---~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 108 EQFDVITSRALA------SLNV---------LLELTLNLLKVGGYFLAYKGK---KYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred CCccEEEehhhh------CHHH---------HHHHHHHhcCCCCEEEEEcCC---CcHHHHHHHHHhhhhcCceE
Confidence 479999998611 1111 123347889999999975322 2345555553 445555543
No 39
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.22 E-value=0.36 Score=47.58 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=40.1
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeee
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDL 342 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v 342 (399)
+++|+|+|+...+ .....+.-+.++|+|||.+|+--+.. .....+...+...|+-+.+
T Consensus 224 ~~fDlVvan~~~~--------------~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~v~~~~~~~f~~~~~ 281 (288)
T TIGR00406 224 GKADVIVANILAE--------------VIKELYPQFSRLVKPGGWLILSGILE--TQAQSVCDAYEQGFTVVEI 281 (288)
T ss_pred CCceEEEEecCHH--------------HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHHHHHHHHccCceeeE
Confidence 4799999975321 11223445678999999999987765 3467777877777766654
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.12 E-value=0.038 Score=45.87 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=26.3
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeE
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKI 318 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~ 318 (399)
.++|+|++++... . ....+..+.+.|++||.||+=+
T Consensus 87 ~~~D~v~~~~~~~-----~---------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGG-----L---------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcch-----h---------HHHHHHHHHHHcCCCCEEEEEe
Confidence 4699999987532 0 1244677889999999999744
No 41
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.04 E-value=0.019 Score=44.42 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=27.3
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEe
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIK 317 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK 317 (399)
.++|+|++++..... .......+..+...|++||.+++-
T Consensus 65 ~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 65 ESFDVIISDPPLHHL----------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CceEEEEEccceeeh----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 569999999986642 123334445566678999999875
No 42
>PRK14967 putative methyltransferase; Provisional
Probab=94.90 E-value=0.1 Score=49.19 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHH
Q psy15838 147 CKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 147 ~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~ 184 (399)
..|.++..+..+.+. .++||+|||+|.++..+..
T Consensus 23 ~~l~~~l~~~~~~~~----~~vLDlGcG~G~~~~~la~ 56 (223)
T PRK14967 23 QLLADALAAEGLGPG----RRVLDLCTGSGALAVAAAA 56 (223)
T ss_pred HHHHHHHHhcccCCC----CeEEEecCCHHHHHHHHHH
Confidence 456666666654432 3899999999998875543
No 43
>PLN03075 nicotianamine synthase; Provisional
Probab=94.87 E-value=0.22 Score=49.84 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=50.2
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHH-----HHhcCCeeeee
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYL-----LACLFTSVDLF 343 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~l-----L~~~F~~V~v~ 343 (399)
+.+|+|+++.-.+.. .++.++. +.-....|+|||.+++-+..+ ...++|- .-.-|+...++
T Consensus 194 ~~FDlVF~~ALi~~d-k~~k~~v---------L~~l~~~LkPGG~Lvlr~~~G----~r~~LYp~v~~~~~~gf~~~~~~ 259 (296)
T PLN03075 194 KEYDVVFLAALVGMD-KEEKVKV---------IEHLGKHMAPGALLMLRSAHG----ARAFLYPVVDPCDLRGFEVLSVF 259 (296)
T ss_pred CCcCEEEEecccccc-cccHHHH---------HHHHHHhcCCCcEEEEecccc----hHhhcCCCCChhhCCCeEEEEEE
Confidence 569999999444432 1122222 223446899999999999665 3445541 23379999999
Q ss_pred cCCCCCCCCceEEEEEee
Q psy15838 344 KPATSKEGNSEIYVICRD 361 (399)
Q Consensus 344 KP~aSR~~sSE~YlVc~g 361 (399)
.| ....-||=+.+=+.+
T Consensus 260 ~P-~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 260 HP-TDEVINSVIIARKPG 276 (296)
T ss_pred CC-CCCceeeEEEEEeec
Confidence 99 555888855544444
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=94.47 E-value=0.43 Score=48.20 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCCC-CCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCC
Q psy15838 149 FHEIVHSYNIVPQ-QENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNP 204 (399)
Q Consensus 149 L~EId~~f~l~~~-~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP 204 (399)
+.++.+...+-.. .....++||+|||.|+++..+.... ..+.+|++++|
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-------g~~v~gvD~s~ 151 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-------GANVKGITLSP 151 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-------CCEEEEEECCH
Confidence 4456666655210 0112489999999999988654421 12456666654
No 45
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.36 E-value=0.35 Score=44.74 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=39.7
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATS 348 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~aS 348 (399)
..+|+|+++++.. .. ...+..+..+|++||.+|+=..+. .....++..|..+--++.+..-..+
T Consensus 110 ~~~D~V~~~~~~~-----~~---------~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~ 173 (198)
T PRK00377 110 EKFDRIFIGGGSE-----KL---------KEIISASWEIIKKGGRIVIDAILL--ETVNNALSALENIGFNLEITEVIIA 173 (198)
T ss_pred CCCCEEEECCCcc-----cH---------HHHHHHHHHHcCCCcEEEEEeecH--HHHHHHHHHHHHcCCCeEEEEEehh
Confidence 4699999976321 11 123456778999999999622222 2345666677543226666666665
Q ss_pred CC
Q psy15838 349 KE 350 (399)
Q Consensus 349 R~ 350 (399)
|.
T Consensus 174 ~~ 175 (198)
T PRK00377 174 KG 175 (198)
T ss_pred hc
Confidence 54
No 46
>PRK08317 hypothetical protein; Provisional
Probab=94.36 E-value=0.3 Score=45.02 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=26.4
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIF 319 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F 319 (399)
..+|+|+++.....-.+ .. ..+.-+..+|++||.+++=..
T Consensus 86 ~~~D~v~~~~~~~~~~~--~~---------~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 86 GSFDAVRSDRVLQHLED--PA---------RALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCceEEEEechhhccCC--HH---------HHHHHHHHHhcCCcEEEEEec
Confidence 56999999877654322 11 123345668999999997543
No 47
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.34 E-value=0.31 Score=44.06 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=37.7
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeec
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFK 344 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~K 344 (399)
..++|+|+++==.. .|. .. ...+...-+.-|...|++||.|++ ++.... ....+ |...|..|.+.+
T Consensus 96 ~~~fD~Iv~NPP~~-~~~-~~----~~~~~~~~i~~a~~~Lk~~G~l~l-v~~~~~-~~~~~---l~~~f~~~~~~~ 161 (170)
T PF05175_consen 96 DGKFDLIVSNPPFH-AGG-DD----GLDLLRDFIEQARRYLKPGGRLFL-VINSHL-GYERL---LKELFGDVEVVA 161 (170)
T ss_dssp TTCEEEEEE---SB-TTS-HC----HHHHHHHHHHHHHHHEEEEEEEEE-EEETTS-CHHHH---HHHHHS--EEEE
T ss_pred ccceeEEEEccchh-ccc-cc----chhhHHHHHHHHHHhccCCCEEEE-EeecCC-ChHHH---HHHhcCCEEEEE
Confidence 36799999873211 222 11 123344456678899999999987 444422 22333 888899888765
No 48
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=94.31 E-value=0.075 Score=61.55 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=67.1
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeecCCC
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPAT 347 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~KP~a 347 (399)
-+.+.+|=||----..|..+.. .+.++..+++..|+++...||++|+|+=---...-..|+..+...|..+++.||--
T Consensus 567 TGtf~fVYSDVDQV~dg~~dl~--As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~ivKPlI 644 (1289)
T PF06016_consen 567 TGTFTFVYSDVDQVQDGGDDLV--ASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYHIVKPLI 644 (1289)
T ss_dssp ---EEEEEEE-----SSTTTHH--HHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEEEEEEES
T ss_pred CCceEEEEecchhhccCCcchh--hhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceeeEeccee
Confidence 3679999999776555544444 67899999999999999999999999976555567788889999999999999976
Q ss_pred CCCCCceEEEEEeec
Q psy15838 348 SKEGNSEIYVICRDF 362 (399)
Q Consensus 348 SR~~sSE~YlVc~gf 362 (399)
. .|.|+|+|..+.
T Consensus 645 ~--NNvEvflv~~~~ 657 (1289)
T PF06016_consen 645 V--NNVEVFLVFGGR 657 (1289)
T ss_dssp S--SS--EEEEECEC
T ss_pred e--cceEEEEEEEee
Confidence 4 689999995544
No 49
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.05 E-value=0.25 Score=48.21 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=51.5
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC--CCCHHHHHHHHHhcCCeeeeecCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF--ESDTICLMYLLACLFTSVDLFKPA 346 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~--e~~t~~Ll~lL~~~F~~V~v~KP~ 346 (399)
+++|+|++|...... .. +.+. ....+..+...|++||.+|+-.-... ......+...++..|..|..+...
T Consensus 144 ~~yDvIi~D~~~~~~-~~---~~l~---~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~ 216 (270)
T TIGR00417 144 NTFDVIIVDSTDPVG-PA---ETLF---TKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTAN 216 (270)
T ss_pred CCccEEEEeCCCCCC-cc---cchh---HHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 579999999864322 11 1111 12223356689999999998622111 112334556688999999877543
Q ss_pred C-CCCCCceEEEEEee
Q psy15838 347 T-SKEGNSEIYVICRD 361 (399)
Q Consensus 347 a-SR~~sSE~YlVc~g 361 (399)
. |-++..=.|++|..
T Consensus 217 vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 217 IPTYPSGLWTFTIGSK 232 (270)
T ss_pred cCccccchhEEEEEEC
Confidence 3 34444448899965
No 50
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.00 E-value=0.087 Score=50.63 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=27.3
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEcc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFT 320 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~ 320 (399)
+.+|+|++.+......+ .+ ..+..+..+|+|||.+++=.+.
T Consensus 111 ~~fD~V~~~~vl~~~~~--~~---------~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 111 TPVDLILFHAVLEWVAD--PK---------SVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCCEEEehhHHHhhCC--HH---------HHHHHHHHHcCCCeEEEEEEEC
Confidence 46999998877543222 11 2344567899999999874444
No 51
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=93.83 E-value=0.017 Score=50.88 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=29.6
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEcc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFT 320 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~ 320 (399)
..+|+|++++...... +. ...+..+..+|++||.+++=.+.
T Consensus 72 ~~~D~I~~~~~l~~~~--~~---------~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFP--DP---------EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTGGGTS--HH---------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCchhhcc--CH---------HHHHHHHHHHcCCCcEEEEEECC
Confidence 4799999998873221 11 12244678899999999988887
No 52
>KOG1122|consensus
Probab=93.73 E-value=0.38 Score=50.31 Aligned_cols=83 Identities=23% Similarity=0.235 Sum_probs=51.0
Q ss_pred CcccEEEecCCCCCCCCC----------chhHH-HHHHHHHHHHHHHHhccCCCCEEEEeEccCC-CCCHHHHHHHHHhc
Q psy15838 269 SHCFLVTADGSFDCQGNP----------GEQEI-LVGKLHYREVQIALSLLHNGGNLVIKIFTIF-ESDTICLMYLLACL 336 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~----------~~qe~-~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~-e~~t~~Ll~lL~~~ 336 (399)
++||-|+-|+=-.-+|.- ...+. ....|..--+..|..++++||.+|--+=+.. +....-+-|.|.++
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 379999999743332222 12222 2346777778889999999999997776654 33444455777774
Q ss_pred CCeeeeecCCCCCCCCc
Q psy15838 337 FTSVDLFKPATSKEGNS 353 (399)
Q Consensus 337 F~~V~v~KP~aSR~~sS 353 (399)
-.|++ -|...+-+..
T Consensus 391 -p~~kL-~p~~~~iG~~ 405 (460)
T KOG1122|consen 391 -PEVKL-VPTGLDIGGE 405 (460)
T ss_pred -CceEe-ccccccCCCC
Confidence 33433 2555555544
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=93.60 E-value=0.054 Score=52.39 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=27.1
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEe
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIK 317 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK 317 (399)
+.+|+|++........ +.+ ..+.-+.++|+|||.|++-
T Consensus 145 ~~fD~Vi~~~v~~~~~--d~~---------~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 145 NSVDVIISNCVINLSP--DKE---------RVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred CceeEEEEcCcccCCC--CHH---------HHHHHHHHHcCCCcEEEEE
Confidence 4799999998765432 221 2344578899999999984
No 54
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.44 E-value=0.15 Score=50.51 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=45.5
Q ss_pred cccEEEecCCCCCCC----CCc-------hhHHHHHHHHHHHHHHHHhcc----CCCCEEEEeEccCCCCCHHHHHH-HH
Q psy15838 270 HCFLVTADGSFDCQG----NPG-------EQEILVGKLHYREVQIALSLL----HNGGNLVIKIFTIFESDTICLMY-LL 333 (399)
Q Consensus 270 ~vDLV~ADGs~d~sg----~~~-------~qe~~s~~L~~~el~~Al~~L----r~GG~fVlK~F~~~e~~t~~Ll~-lL 333 (399)
.+|.|+.|.-=.-+| +|+ .+..-...+...-+..|..++ ++||.+|-=+=+.....-...+. .|
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl 235 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFL 235 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHH
Confidence 599999996433222 121 233344577777888899999 99999987665544222344444 45
Q ss_pred HhcCCeeeeec
Q psy15838 334 ACLFTSVDLFK 344 (399)
Q Consensus 334 ~~~F~~V~v~K 344 (399)
.. +..+.+..
T Consensus 236 ~~-~~~~~l~~ 245 (283)
T PF01189_consen 236 KR-HPDFELVP 245 (283)
T ss_dssp HH-STSEEEEC
T ss_pred Hh-CCCcEEEe
Confidence 54 44454443
No 55
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.08 E-value=0.4 Score=51.06 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=78.5
Q ss_pred CCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcEEeccccccccCccccCCCccccCCCChHH
Q psy15838 164 NSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRLILGTHRKWYFGPDNTGNILVQNF 243 (399)
Q Consensus 164 ~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~~~~~~w~~G~d~tGDI~~~~~ 243 (399)
...+|+|.-++-|||.+||..+- -||-+.. |..+.|..+ +|- ||=..+++-.||
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~---------VWVMNVV-P~~~~ntL~-vIy-dRGLIG~yhDWC-------------- 418 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP---------VWVMNVV-PVSGPNTLP-VIY-DRGLIGVYHDWC-------------- 418 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC---------ceEEEec-ccCCCCcch-hhh-hcccchhccchh--------------
Confidence 46799999999999999885521 2543322 444333332 222 221122222333
Q ss_pred HHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 244 VSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 244 i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
+. ..+-.+.+|||.||+-+..--++ ....-.++=+=++|||||.+|+.=...
T Consensus 419 -----E~-------------fsTYPRTYDLlHA~~lfs~~~~r--------C~~~~illEmDRILRP~G~~iiRD~~~-- 470 (506)
T PF03141_consen 419 -----EA-------------FSTYPRTYDLLHADGLFSLYKDR--------CEMEDILLEMDRILRPGGWVIIRDTVD-- 470 (506)
T ss_pred -----hc-------------cCCCCcchhheehhhhhhhhccc--------ccHHHHHHHhHhhcCCCceEEEeccHH--
Confidence 11 12346789999999998753222 112222333557999999999852221
Q ss_pred CCHHHHHHHHHhcCCeeeeecCCCCCCCCceEEEEEe
Q psy15838 324 SDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICR 360 (399)
Q Consensus 324 ~~t~~Ll~lL~~~F~~V~v~KP~aSR~~sSE~YlVc~ 360 (399)
....+-.++..+==+++++.- -..+...|.-+||+
T Consensus 471 -vl~~v~~i~~~lrW~~~~~d~-e~g~~~~EkiL~~~ 505 (506)
T PF03141_consen 471 -VLEKVKKIAKSLRWEVRIHDT-EDGPDGPEKILICQ 505 (506)
T ss_pred -HHHHHHHHHHhCcceEEEEec-CCCCCCCceEEEEE
Confidence 122233344443345666554 33455689999986
No 56
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.02 E-value=0.12 Score=50.26 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=20.6
Q ss_pred HHHHhCCCCCCCCCCceEEEeccCCChhHHHHH
Q psy15838 151 EIVHSYNIVPQQENSFTSIHLCEAPGAFITSLN 183 (399)
Q Consensus 151 EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln 183 (399)
+++...++-+. .+|||+|||.|+.+..+.
T Consensus 43 ~~l~~l~l~~~----~~VLDiGcG~G~~a~~la 71 (263)
T PTZ00098 43 KILSDIELNEN----SKVLDIGSGLGGGCKYIN 71 (263)
T ss_pred HHHHhCCCCCC----CEEEEEcCCCChhhHHHH
Confidence 45555555443 389999999999887543
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.00 E-value=0.17 Score=52.20 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=29.9
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTI 321 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~ 321 (399)
+.+|+|+|=+.+...|..+.+ ..+..+..+|+|||.+++-.+..
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~---------~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYR---------TYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCCCEEEEeCchhhCChHHHH---------HHHHHHHHHcCCCcEEEEEEccC
Confidence 469999987766544433322 22345778999999999977654
No 58
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=92.85 E-value=0.56 Score=48.78 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=36.3
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccC
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTI 321 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~ 321 (399)
+.++|||+.|=-.- +..-.++....+=+..-+..|+.+|+|||++|.=.=..
T Consensus 288 g~~fDlIilDPPsF--~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 GEKFDLIILDPPSF--ARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccEEEECCccc--ccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 56899999984322 22233444555667777889999999999998755443
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=92.70 E-value=0.4 Score=43.40 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeee
Q psy15838 296 LHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDL 342 (399)
Q Consensus 296 L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v 342 (399)
+...-+..+..+|++||.+++=.... .....++..|...-=.+++
T Consensus 118 ~~~~~l~~~~~~Lk~gG~~~~~~~~~--~~~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 118 VIDRFLDELPEILKEGGRVQLIQSSL--NGEPDTFDKLDERGFRYEI 162 (179)
T ss_pred HHHHHHHhHHHhhCCCCEEEEEEecc--CChHHHHHHHHhCCCeEEE
Confidence 34555667788999999998855443 2356667776554333333
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=92.59 E-value=1.8 Score=40.24 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=26.5
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF 322 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~ 322 (399)
+++|+|++++.. +. ...+..+..+|++||.+++=.+...
T Consensus 111 ~~fDlV~~~~~~------~~---------~~~l~~~~~~LkpGG~lv~~~~~~~ 149 (187)
T PRK00107 111 EKFDVVTSRAVA------SL---------SDLVELCLPLLKPGGRFLALKGRDP 149 (187)
T ss_pred CCccEEEEcccc------CH---------HHHHHHHHHhcCCCeEEEEEeCCCh
Confidence 479999997521 11 1233567789999999997765543
No 61
>PRK07402 precorrin-6B methylase; Provisional
Probab=92.40 E-value=0.83 Score=42.01 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=27.5
Q ss_pred HHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhc-CCeeeeecCCCC
Q psy15838 301 VQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACL-FTSVDLFKPATS 348 (399)
Q Consensus 301 l~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~-F~~V~v~KP~aS 348 (399)
+..+...|++||.|++-..... ....+...+... ...+++.+...+
T Consensus 125 l~~~~~~LkpgG~li~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (196)
T PRK07402 125 LQAVWQYLKPGGRLVATASSLE--GLYAISEGLAQLQARNIEVVQAAVN 171 (196)
T ss_pred HHHHHHhcCCCeEEEEEeecHH--HHHHHHHHHHhcCCCCceEEEEEhh
Confidence 4456667999999999976542 233344555442 445555555443
No 62
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=92.38 E-value=0.46 Score=44.51 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=16.7
Q ss_pred ceEEEeccCCChhHHHHHHh
Q psy15838 166 FTSIHLCEAPGAFITSLNHY 185 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~y 185 (399)
.++||+|||+|.++..+.+.
T Consensus 79 ~~VLDiG~GsG~~a~~la~~ 98 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEI 98 (215)
T ss_pred CEEEEECCCccHHHHHHHHH
Confidence 39999999999999866553
No 63
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.18 E-value=0.73 Score=42.99 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=16.4
Q ss_pred ceEEEeccCCChhHHHHHHh
Q psy15838 166 FTSIHLCEAPGAFITSLNHY 185 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~y 185 (399)
.++||+|||+|..+..+.+.
T Consensus 74 ~~VLDiG~GsG~~~~~la~~ 93 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEA 93 (205)
T ss_pred CEEEEECcCccHHHHHHHHh
Confidence 38999999999988766554
No 64
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.16 E-value=0.74 Score=46.19 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=32.4
Q ss_pred CcccEEEecCCCCCC-CCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccC
Q psy15838 269 SHCFLVTADGSFDCQ-GNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTI 321 (399)
Q Consensus 269 ~~vDLV~ADGs~d~s-g~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~ 321 (399)
..+|+|++|.-.-.. +.... ....+....+..+...|++||.+++-+-+.
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~---~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGD---GLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCCCEEEECCCCcCcccccCC---chHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 469999999432211 11111 123566677778889999999999876544
No 65
>PRK03612 spermidine synthase; Provisional
Probab=92.15 E-value=0.28 Score=52.59 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=37.1
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHH-HHHHhccCCCCEEEEeEccCC--CCCHHHHHHHHHhc-CCeee
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREV-QIALSLLHNGGNLVIKIFTIF--ESDTICLMYLLACL-FTSVD 341 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el-~~Al~~Lr~GG~fVlK~F~~~--e~~t~~Ll~lL~~~-F~~V~ 341 (399)
+++|+|++|.... .+ +.. .+|...+. ..+.+.|++||.+++-.-... .....++...++.. | .|.
T Consensus 372 ~~fDvIi~D~~~~-~~-~~~-----~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~ 440 (521)
T PRK03612 372 EKFDVIIVDLPDP-SN-PAL-----GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATT 440 (521)
T ss_pred CCCCEEEEeCCCC-CC-cch-----hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEE
Confidence 4799999995322 11 111 12333332 356789999999998542111 12245566777777 7 443
No 66
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.08 E-value=0.1 Score=51.55 Aligned_cols=44 Identities=18% Similarity=0.446 Sum_probs=33.5
Q ss_pred cchhhhHHHHHHHHHHHHhCCCCCCC------CCCceEEEeccCCChhHHHH
Q psy15838 137 IKPQLATQAWCKFHEIVHSYNIVPQQ------ENSFTSIHLCEAPGAFITSL 182 (399)
Q Consensus 137 ~~~e~~trAw~KL~EId~~f~l~~~~------~~~~~vlDLceaPGgFsqal 182 (399)
.-.+-.|||..||.|-...| ++.. ...+.-+|||+|||||+-.|
T Consensus 180 fp~dAPSRStLKLEEA~~tf--ip~~E~~~rL~~~M~avDLGAcPGGWTyqL 229 (358)
T COG2933 180 FPADAPSRSTLKLEEAFHTF--IPRDEWDKRLAPGMWAVDLGACPGGWTYQL 229 (358)
T ss_pred CCCCCCchhhhhHHHHHHHh--cChhhhhhhhcCCceeeecccCCCccchhh
Confidence 34566899999999988877 4431 13479999999999998543
No 67
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=91.97 E-value=1.5 Score=42.47 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=39.7
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHH
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLA 334 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~ 334 (399)
....||+.|..++-.-- ||. ..+.--+..|.|||++-+-|=+..+..+..+|....
T Consensus 90 ~~~~dllfaNAvlqWlp----dH~-------~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A 145 (257)
T COG4106 90 EQPTDLLFANAVLQWLP----DHP-------ELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETA 145 (257)
T ss_pred CCccchhhhhhhhhhcc----ccH-------HHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHH
Confidence 35789999988876432 222 112223457899999999999998888888887654
No 68
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=91.86 E-value=0.52 Score=52.39 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=28.1
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVI 316 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl 316 (399)
+++|+|++|--....+....+.....+-+...+..|+.+|++||.+++
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~ 654 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYF 654 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 469999999432222211111111223344556678999999999876
No 69
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=91.66 E-value=0.35 Score=48.62 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHH
Q psy15838 144 QAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSL 182 (399)
Q Consensus 144 rAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqal 182 (399)
|+.+|..-+....+.+.. .+|||+|||.|.++..+
T Consensus 106 ~s~~k~~~l~~~l~~l~g----~~VLDIGCG~G~~~~~l 140 (322)
T PRK15068 106 RSDWKWDRVLPHLSPLKG----RTVLDVGCGNGYHMWRM 140 (322)
T ss_pred hHHhHHHHHHHhhCCCCC----CEEEEeccCCcHHHHHH
Confidence 566776666666654443 39999999999998743
No 70
>PLN02366 spermidine synthase
Probab=91.64 E-value=0.76 Score=46.18 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=49.9
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHH-HHHHHhccCCCCEEEEeEccCC--CCCHHHHHHHHHhcC-Ceeeeec
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYRE-VQIALSLLHNGGNLVIKIFTIF--ESDTICLMYLLACLF-TSVDLFK 344 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~e-l~~Al~~Lr~GG~fVlK~F~~~--e~~t~~Ll~lL~~~F-~~V~v~K 344 (399)
+.+|+|++|..... |. . ..|...+ +..+...|++||.+|.-.-..+ ......++..|+..| ..|..+-
T Consensus 164 ~~yDvIi~D~~dp~-~~-~------~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~ 235 (308)
T PLN02366 164 GTYDAIIVDSSDPV-GP-A------QELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAW 235 (308)
T ss_pred CCCCEEEEcCCCCC-Cc-h------hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEE
Confidence 47999999986543 21 1 1222222 2345678999999987432111 123567788899999 4664432
Q ss_pred -CCCCCCCCceEEEEEee
Q psy15838 345 -PATSKEGNSEIYVICRD 361 (399)
Q Consensus 345 -P~aSR~~sSE~YlVc~g 361 (399)
..-|-++-.=-|++|..
T Consensus 236 ~~vPsy~~g~w~f~~as~ 253 (308)
T PLN02366 236 TTVPTYPSGVIGFVLCSK 253 (308)
T ss_pred ecCCCcCCCceEEEEEEC
Confidence 22344444446888854
No 71
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=91.64 E-value=0.26 Score=45.92 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=23.0
Q ss_pred ceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCC
Q psy15838 166 FTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNP 204 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP 204 (399)
.++||||||+|.++..+..... . .+++|++++|
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p----~--~~v~gVD~s~ 74 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANP----D--INFIGIEVHE 74 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCC----C--ccEEEEEech
Confidence 4899999999999987654321 1 2356666654
No 72
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.63 E-value=1.1 Score=46.94 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=28.1
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEcc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFT 320 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~ 320 (399)
+.+|+|+|-++...-. +.+ ..+.-+..+|+|||.+++=.+.
T Consensus 331 ~~fD~I~s~~~l~h~~--d~~---------~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 331 NSFDVIYSRDTILHIQ--DKP---------ALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCEEEEEECCcccccC--CHH---------HHHHHHHHHcCCCeEEEEEEec
Confidence 4699999987764332 221 2234467799999999987654
No 73
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=91.48 E-value=0.17 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhccCCCCEEEEeEc
Q psy15838 296 LHYREVQIALSLLHNGGNLVIKIF 319 (399)
Q Consensus 296 L~~~el~~Al~~Lr~GG~fVlK~F 319 (399)
+...-+..|...|++||.+++=+-
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 445556678899999999997664
No 74
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=91.45 E-value=1.5 Score=43.77 Aligned_cols=121 Identities=16% Similarity=0.238 Sum_probs=70.4
Q ss_pred HHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHH-hhhccCCCCccceeccccCCCcCCCCCCcEEeccccccccCc
Q psy15838 148 KFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNH-YLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRLILGTHR 226 (399)
Q Consensus 148 KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~-yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~~~~~ 226 (399)
|+-.|.++.+|-++ +++||+|||=||.+-++-. | +-+.+|+||.+..-... ..+.-
T Consensus 60 k~~~~~~kl~L~~G----~~lLDiGCGWG~l~~~aA~~y--------~v~V~GvTlS~~Q~~~~------~~r~~----- 116 (283)
T COG2230 60 KLDLILEKLGLKPG----MTLLDIGCGWGGLAIYAAEEY--------GVTVVGVTLSEEQLAYA------EKRIA----- 116 (283)
T ss_pred HHHHHHHhcCCCCC----CEEEEeCCChhHHHHHHHHHc--------CCEEEEeeCCHHHHHHH------HHHHH-----
Confidence 78889999988775 4999999999998875322 2 11345666633100000 00000
Q ss_pred cccCCCccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q psy15838 227 KWYFGPDNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALS 306 (399)
Q Consensus 227 ~w~~G~d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~ 306 (399)
.-|..+.-++ ..++- ....++||-|+|=|++---|..+.+... ..+-.
T Consensus 117 --~~gl~~~v~v----------------~l~d~-----rd~~e~fDrIvSvgmfEhvg~~~~~~ff---------~~~~~ 164 (283)
T COG2230 117 --ARGLEDNVEV----------------RLQDY-----RDFEEPFDRIVSVGMFEHVGKENYDDFF---------KKVYA 164 (283)
T ss_pred --HcCCCcccEE----------------Eeccc-----cccccccceeeehhhHHHhCcccHHHHH---------HHHHh
Confidence 0011100000 00000 0013458889998888877776666543 34677
Q ss_pred ccCCCCEEEEeEccCCC
Q psy15838 307 LLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 307 ~Lr~GG~fVlK~F~~~e 323 (399)
+|++||.+++=......
T Consensus 165 ~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 165 LLKPGGRMLLHSITGPD 181 (283)
T ss_pred hcCCCceEEEEEecCCC
Confidence 99999999998888765
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=91.43 E-value=0.19 Score=51.11 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=39.6
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeeec
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFK 344 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~K 344 (399)
+.+|+|+++-.+......+ ......-+.-|.+.|++||.+++=.-.. ...-..|...|..+.+.-
T Consensus 260 ~~fDlIvsNPPFH~g~~~~------~~~~~~~i~~a~~~LkpgG~L~iVan~~-----l~y~~~l~~~Fg~~~~la 324 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTS------LDAAQTLIRGAVRHLNSGGELRIVANAF-----LPYPDLLDETFGSHEVLA 324 (342)
T ss_pred CCccEEEECCCccCCcccc------HHHHHHHHHHHHHhcCcCCEEEEEEeCC-----CChHHHHHHHcCCeEEEE
Confidence 4699999987554322111 1233444566788999999997643322 112245667788887664
No 76
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=91.41 E-value=1.3 Score=45.97 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=34.5
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACL 336 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~ 336 (399)
.++|+|++|-=.......... ....-...-+..|+.+|++||.+|+=.-... -....++..+...
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~--~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~~a 356 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLM--GACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIADA 356 (396)
T ss_pred CCCCEEEECCCCCCCChHHHH--HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHHHH
Confidence 469999999543222111111 1112233445678999999999985332221 1234455555543
No 77
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=91.28 E-value=2.9 Score=40.18 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=36.0
Q ss_pred cccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhc-CCeee
Q psy15838 270 HCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACL-FTSVD 341 (399)
Q Consensus 270 ~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~-F~~V~ 341 (399)
.+|+|+|+...+ .....+.-+..+|++||.+|+=-+.. .....+...+... |+-+.
T Consensus 179 ~fD~Vvani~~~--------------~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 179 KADVIVANILAN--------------PLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred CcCEEEEcCcHH--------------HHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEE
Confidence 699999865321 12233455778999999999864443 3456677777765 55443
No 78
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=91.04 E-value=1.1 Score=44.53 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=90.1
Q ss_pred HHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCCcCCCCCCcEEeccccccccCcccc
Q psy15838 150 HEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRLILGTHRKWY 229 (399)
Q Consensus 150 ~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~~~~~~w~ 229 (399)
.|++..-.++-.++. .+||-+|.|.||++..+.++.... +.+.+.++|- +|. +....++.|.
T Consensus 63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve------~i~~VEID~~--------Vi~---~ar~~l~~~~ 124 (282)
T COG0421 63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVE------RITMVEIDPA--------VIE---LARKYLPEPS 124 (282)
T ss_pred HHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcc------eEEEEEcCHH--------HHH---HHHHhccCcc
Confidence 344444343333322 499999999999998765543211 1222333321 111 1122333333
Q ss_pred CCCc-cccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhcc
Q psy15838 230 FGPD-NTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLL 308 (399)
Q Consensus 230 ~G~d-~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~L 308 (399)
.|.+ -.-+|.-..-.+.+++ ...++|||+.|......-.++.-+ .-.+ ..+-+.|
T Consensus 125 ~~~~dpRv~i~i~Dg~~~v~~-----------------~~~~fDvIi~D~tdp~gp~~~Lft----~eFy---~~~~~~L 180 (282)
T COG0421 125 GGADDPRVEIIIDDGVEFLRD-----------------CEEKFDVIIVDSTDPVGPAEALFT----EEFY---EGCRRAL 180 (282)
T ss_pred cccCCCceEEEeccHHHHHHh-----------------CCCcCCEEEEcCCCCCCcccccCC----HHHH---HHHHHhc
Confidence 2322 3333333444555555 134899999999877421122111 1111 2245689
Q ss_pred CCCCEEEEe---EccCCCCCHHHHHHHHHhcCCeeeeec-CCCCCCCCceEEEEEeec
Q psy15838 309 HNGGNLVIK---IFTIFESDTICLMYLLACLFTSVDLFK-PATSKEGNSEIYVICRDF 362 (399)
Q Consensus 309 r~GG~fVlK---~F~~~e~~t~~Ll~lL~~~F~~V~v~K-P~aSR~~sSE~YlVc~gf 362 (399)
+++|.+|.= .|-.. .........+...|..+..+- |.-+-++..+.|+|+...
T Consensus 181 ~~~Gi~v~q~~~~~~~~-~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~ 237 (282)
T COG0421 181 KEDGIFVAQAGSPFLQD-EEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFN 237 (282)
T ss_pred CCCcEEEEecCCcccch-HHHHHHHHHHHhhccccccceeccceecCCceEEEEeecC
Confidence 999999998 33332 112344456888888776553 334555566788888743
No 79
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=91.04 E-value=7.8 Score=35.20 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=34.0
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHh-cCCeee
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLAC-LFTSVD 341 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~-~F~~V~ 341 (399)
..+|+|++++... ... . -+..+...|++||.+|+=.... .....++..+.. -|+.+.
T Consensus 96 ~~~D~v~~~~~~~-----~~~-----~----~l~~~~~~Lk~gG~lv~~~~~~--~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 96 GKADAIFIGGSGG-----NLT-----A----IIDWSLAHLHPGGRLVLTFILL--ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred cCCCEEEECCCcc-----CHH-----H----HHHHHHHhcCCCeEEEEEEecH--hhHHHHHHHHHHCCCCcce
Confidence 3699999987531 111 1 1334678899999998843332 235566666643 455443
No 80
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.03 E-value=0.39 Score=44.06 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=28.7
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF 322 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~ 322 (399)
+.+|+|++..+.... ++. ...+.-+...|++||.+++--+...
T Consensus 105 ~~~D~i~~~~~~~~~--~~~---------~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 105 NSFDAVTIAFGLRNV--TDI---------QKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred CcEEEEEEeeeeCCc--ccH---------HHHHHHHHHHcCCCcEEEEEEecCC
Confidence 469999986554221 111 1345667789999999998777654
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.95 E-value=0.85 Score=42.89 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=16.5
Q ss_pred ceEEEeccCCChhHHHHHHh
Q psy15838 166 FTSIHLCEAPGAFITSLNHY 185 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~y 185 (399)
.++||+|+|+|..+..+.+.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~ 97 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEI 97 (212)
T ss_pred CEEEEECCcccHHHHHHHHh
Confidence 39999999999988766554
No 82
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.88 E-value=2.4 Score=39.19 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=20.4
Q ss_pred HHHHhCCCCCCCCCCceEEEeccCCChhHHHHHH
Q psy15838 151 EIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 151 EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~ 184 (399)
+|.+..++.++ .++||+|||.|.++.++..
T Consensus 21 ~l~~~~~~~~~----~~vLDiGcG~G~~a~~la~ 50 (195)
T TIGR00477 21 AVREAVKTVAP----CKTLDLGCGQGRNSLYLSL 50 (195)
T ss_pred HHHHHhccCCC----CcEEEeCCCCCHHHHHHHH
Confidence 34444444443 3899999999999885543
No 83
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.62 E-value=2.2 Score=44.17 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=39.8
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCeeeee
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLF 343 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V~v~ 343 (399)
.++|+|+|+=-+.. |....+ .+...-+.-|...|++||.|++=.-.. ......|...|..+++.
T Consensus 297 ~~fDlIlsNPPfh~-~~~~~~-----~ia~~l~~~a~~~LkpGG~L~iV~nr~-----l~y~~~L~~~fg~~~~v 360 (378)
T PRK15001 297 FRFNAVLCNPPFHQ-QHALTD-----NVAWEMFHHARRCLKINGELYIVANRH-----LDYFHKLKKIFGNCTTI 360 (378)
T ss_pred CCEEEEEECcCccc-CccCCH-----HHHHHHHHHHHHhcccCCEEEEEEecC-----cCHHHHHHHHcCCceEE
Confidence 46999999744432 221112 122334555789999999988765332 33556777788887764
No 84
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=90.58 E-value=0.62 Score=44.80 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=26.8
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
..+|.|++=.+.. ..++.+ ..+.-+.++|+|||.+++==|....
T Consensus 115 ~sfD~v~~~fglr--n~~d~~---------~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 115 NSFDAVTCSFGLR--NFPDRE---------RALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp T-EEEEEEES-GG--G-SSHH---------HHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CceeEEEHHhhHH--hhCCHH---------HHHHHHHHHcCCCeEEEEeeccCCC
Confidence 4688888554432 111221 2445577899999999998888765
No 85
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=90.41 E-value=3.2 Score=38.39 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=14.7
Q ss_pred eEEEeccCCChhHHHHH
Q psy15838 167 TSIHLCEAPGAFITSLN 183 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln 183 (399)
++||+|||.|.++..+.
T Consensus 33 ~vLDiGcG~G~~a~~La 49 (197)
T PRK11207 33 KTLDLGCGNGRNSLYLA 49 (197)
T ss_pred cEEEECCCCCHHHHHHH
Confidence 89999999999887543
No 86
>PRK01581 speE spermidine synthase; Validated
Probab=90.34 E-value=1.7 Score=44.95 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=55.0
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHH-HHHHHhccCCCCEEEEeEccCCC--CCHHHHHHHHHhcCCeeeeecC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYRE-VQIALSLLHNGGNLVIKIFTIFE--SDTICLMYLLACLFTSVDLFKP 345 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~e-l~~Al~~Lr~GG~fVlK~F~~~e--~~t~~Ll~lL~~~F~~V~v~KP 345 (399)
..+|+|++|.. +..+.+ ...|...+ +..+...|+|||.||+=.=.... .....+...|...|-.|..+.-
T Consensus 225 ~~YDVIIvDl~-DP~~~~------~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 225 SLYDVIIIDFP-DPATEL------LSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCccEEEEcCC-Cccccc------hhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEE
Confidence 46999999953 322211 12333222 34567789999999885211111 0113356678888888776654
Q ss_pred CCCCCCCceEEEEEeeccC-Cccccccccccc
Q psy15838 346 ATSKEGNSEIYVICRDFHS-VCSQVWIYLNLP 376 (399)
Q Consensus 346 ~aSR~~sSE~YlVc~gf~g-~~~~~~~~~~~~ 376 (399)
...-=+..=-|++|..--. .+.+.+|+..++
T Consensus 298 ~vPsyg~~WgF~~as~~~~~~~~~~~~~~~~~ 329 (374)
T PRK01581 298 IVPSFGTDWGFHIAANSAYVLDQIEQLYVVPT 329 (374)
T ss_pred ecCCCCCceEEEEEeCCcccccccceeeecCC
Confidence 3222234456788854211 113366666553
No 87
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=90.30 E-value=2.9 Score=44.02 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=37.6
Q ss_pred HHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHh-cCCeeeeecCCCCCCCCceEEEEEee
Q psy15838 297 HYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLAC-LFTSVDLFKPATSKEGNSEIYVICRD 361 (399)
Q Consensus 297 ~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~-~F~~V~v~KP~aSR~~sSE~YlVc~g 361 (399)
...-+..|-..|++||.+++=+ +. ..-..+..++.. -|..|.++|=.+- .+++++++.
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEi--G~-~Q~e~V~~ll~~~Gf~~v~v~kDl~G----~dR~v~~~~ 418 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEH--GF-DQGAAVRGVLAENGFSGVETLPDLAG----LDRVTLGKY 418 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEE--Cc-cHHHHHHHHHHHCCCcEEEEEEcCCC----CcEEEEEEE
Confidence 3344556678999999987533 32 334556666655 3888888765443 378888764
No 88
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=90.06 E-value=3.9 Score=37.84 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=28.0
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
+.+|+|++....... ++. ...+.-+..+|++||.+++--+....
T Consensus 120 ~~~D~I~~~~~l~~~--~~~---------~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 120 NSFDAVTIAFGLRNV--PDI---------DKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred CCccEEEEecccccC--CCH---------HHHHHHHHHhccCCcEEEEEEecCCC
Confidence 469999986654322 111 12244556789999999988776543
No 89
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=90.04 E-value=2 Score=43.38 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHH
Q psy15838 144 QAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITS 181 (399)
Q Consensus 144 rAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqa 181 (399)
||-.|...+......++. .+|+|+|||.|.++..
T Consensus 105 ~s~~~~~~~l~~l~~~~g----~~VLDvGCG~G~~~~~ 138 (314)
T TIGR00452 105 RSDIKWDRVLPHLSPLKG----RTILDVGCGSGYHMWR 138 (314)
T ss_pred HHHHHHHHHHHhcCCCCC----CEEEEeccCCcHHHHH
Confidence 455565556666555543 3999999999998764
No 90
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=89.93 E-value=1.1 Score=44.24 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=30.9
Q ss_pred cccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 270 HCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 270 ~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
++|-|+|=|++---|.++.... +..+-.+|+|||.+++-.+....
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~---------f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAF---------FRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHH---------HHHHHHHSETTEEEEEEEEEE--
T ss_pred CCCEEEEEechhhcChhHHHHH---------HHHHHHhcCCCcEEEEEeccccc
Confidence 6999998888776665444322 23456789999999999888754
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.91 E-value=0.28 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccCCCCEEEEeEcc
Q psy15838 295 KLHYREVQIALSLLHNGGNLVIKIFT 320 (399)
Q Consensus 295 ~L~~~el~~Al~~Lr~GG~fVlK~F~ 320 (399)
.+...-+..|...|++||.+++-+-.
T Consensus 240 ~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 240 DLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 34555667788899999999986543
No 92
>PLN02823 spermine synthase
Probab=89.90 E-value=1.3 Score=45.01 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=52.1
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHH--HHHhccCCCCEEEEeEccC----CCCCHHHHHHHHHhcCCeee
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQ--IALSLLHNGGNLVIKIFTI----FESDTICLMYLLACLFTSVD 341 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~--~Al~~Lr~GG~fVlK~F~~----~e~~t~~Ll~lL~~~F~~V~ 341 (399)
.+.+|+|+.|..-...+.+. ..|...+.. .+...|++||.||+-.=.. .......++..|...|..|.
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~------~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~ 247 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPC------YQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVV 247 (336)
T ss_pred CCCccEEEecCCCccccCcc------hhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEE
Confidence 35799999997432222111 123333332 4568999999999853211 11234667888999999998
Q ss_pred eecCC-CCCCCCceEEEEEee
Q psy15838 342 LFKPA-TSKEGNSEIYVICRD 361 (399)
Q Consensus 342 v~KP~-aSR~~sSE~YlVc~g 361 (399)
.+.-. -|-.. .=-|++|..
T Consensus 248 ~y~~~vPsf~~-~w~f~~aS~ 267 (336)
T PLN02823 248 PYTAHVPSFAD-TWGWVMASD 267 (336)
T ss_pred EEEeecCCCCC-ceEEEEEeC
Confidence 88732 12222 246777754
No 93
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=89.23 E-value=0.18 Score=39.33 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVI 316 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl 316 (399)
...+|+|++-++.... ++. ...+.-+.++|||||.+|+
T Consensus 58 ~~sfD~v~~~~~~~~~--~~~---------~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 58 DNSFDVVFSNSVLHHL--EDP---------EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TT-EEEEEEESHGGGS--SHH---------HHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccceeec--cCH---------HHHHHHHHHHcCcCeEEeC
Confidence 3579999998887654 222 2233446789999999986
No 94
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=88.79 E-value=6.8 Score=38.05 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=29.2
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
..+|+|++-.+...- ++.+ ..+.-+.++|+|||.+++=.|...+
T Consensus 144 ~sfD~V~~~~~l~~~--~d~~---------~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 144 CYFDAITMGYGLRNV--VDRL---------KAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred CCEeEEEEecccccC--CCHH---------HHHHHHHHHcCcCcEEEEEECCCCC
Confidence 469999986654322 2221 2344566799999999998887644
No 95
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=88.74 E-value=1.2 Score=47.69 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHh-cCCeeeeecCCCCC
Q psy15838 297 HYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLAC-LFTSVDLFKPATSK 349 (399)
Q Consensus 297 ~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~-~F~~V~v~KP~aSR 349 (399)
...-+.-|...|++||.+++=+ + ......+..++.. -|..+.++|=.+.+
T Consensus 248 ~~~il~~a~~~L~~gG~l~lEi--g-~~q~~~v~~~~~~~g~~~~~~~~D~~g~ 298 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIILEI--G-FKQEEAVTQIFLDHGYNIESVYKDLQGH 298 (506)
T ss_pred HHHHHHHHHHhccCCCEEEEEE--C-CchHHHHHHHHHhcCCCceEEEecCCCC
Confidence 3444556778999999998743 2 2234455555543 47777777655544
No 96
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=88.40 E-value=2.2 Score=41.39 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHh-cCCeeeeecC
Q psy15838 296 LHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLAC-LFTSVDLFKP 345 (399)
Q Consensus 296 L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~-~F~~V~v~KP 345 (399)
+...-+..|..+|++||.+++=+-.. ....++.+|.. -|+-..+.+|
T Consensus 194 ~~~~i~~~a~~~L~~gG~l~l~~~~~---~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 194 VLRRVAAGAPDWLAPGGHLLVETSER---QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECcc---hHHHHHHHHHHCCCCceeeEcc
Confidence 34555667889999999999764432 34667777654 3544444444
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=88.39 E-value=0.58 Score=45.97 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHH--hcCCeeeeecCCCCCCCCceEEEEEe
Q psy15838 296 LHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLA--CLFTSVDLFKPATSKEGNSEIYVICR 360 (399)
Q Consensus 296 L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~--~~F~~V~v~KP~aSR~~sSE~YlVc~ 360 (399)
....-+..|...|++||.+++=+-... ...+..++. .-|..|.++|=.+ ..++.++++
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~e~g~~q---~~~~~~~~~~~~~~~~~~~~~D~~----g~~R~~~~~ 281 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVCEIGNWQ---QKSLKELLRIKFTWYDVENGRDLN----GKERVVLGF 281 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEEEECccH---HHHHHHHHHhcCCCceeEEecCCC----CCceEEEEE
Confidence 445556678889999999987775432 345555555 3588888877533 335666653
No 98
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=87.71 E-value=0.66 Score=47.30 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=47.2
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccC--------------CCCCHHHHHHHHH
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTI--------------FESDTICLMYLLA 334 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~--------------~e~~t~~Ll~lL~ 334 (399)
..+|+|++-++.....+ .+ ..+.-+..+|++||.+++--... .......+..+|.
T Consensus 177 ~sFDvVIs~~~L~~~~d--~~---------~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~ 245 (340)
T PLN02490 177 DYADRYVSAGSIEYWPD--PQ---------RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFT 245 (340)
T ss_pred CceeEEEEcChhhhCCC--HH---------HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHH
Confidence 46999999777654322 21 13566788999999997632110 0113466777777
Q ss_pred hc-CCeeeeec--CCCCCCCCceEEEEE
Q psy15838 335 CL-FTSVDLFK--PATSKEGNSEIYVIC 359 (399)
Q Consensus 335 ~~-F~~V~v~K--P~aSR~~sSE~YlVc 359 (399)
.. |+.|.+.. |..-|..+.+-|++.
T Consensus 246 ~aGF~~V~i~~i~~~~~~~~~~~~~~~~ 273 (340)
T PLN02490 246 KAGFKDVKLKRIGPKWYRGVRRHGLIMG 273 (340)
T ss_pred HCCCeEEEEEEcChhhccccccccceee
Confidence 75 88766543 433444444555553
No 99
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=87.65 E-value=0.29 Score=49.61 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=34.7
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHh
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLAC 335 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~ 335 (399)
..++|+|.+=-+..-.-. .| .-....+.-+-..|+|||.||.=+.++ ..|+..|+.
T Consensus 143 ~~~FDvVScQFalHY~Fe---se----~~ar~~l~Nvs~~Lk~GG~FIgT~~d~-----~~i~~~l~~ 198 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFE---SE----EKARQFLKNVSSLLKPGGYFIGTTPDS-----DEIVKRLRE 198 (331)
T ss_dssp TS-EEEEEEES-GGGGGS---SH----HHHHHHHHHHHHTEEEEEEEEEEEE-H-----HHHHCCHHC
T ss_pred CCCcceeehHHHHHHhcC---CH----HHHHHHHHHHHHhcCCCCEEEEEecCH-----HHHHHHHHh
Confidence 358999998877654421 11 123445556678999999999866555 556555555
No 100
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=87.62 E-value=0.68 Score=42.76 Aligned_cols=62 Identities=10% Similarity=-0.077 Sum_probs=34.4
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHH-HHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKL-HYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACL 336 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L-~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~ 336 (399)
+.+|.|+.+-.......+ +.. .++ ....+..+..+|++||.|++..-.. .....++..+...
T Consensus 86 ~~~d~v~~~~pdpw~k~~---h~~-~r~~~~~~l~~~~r~LkpgG~l~~~td~~--~~~~~~~~~~~~~ 148 (194)
T TIGR00091 86 GSLSKVFLNFPDPWPKKR---HNK-RRITQPHFLKEYANVLKKGGVIHFKTDNE--PLFEDMLKVLSEN 148 (194)
T ss_pred CceeEEEEECCCcCCCCC---ccc-cccCCHHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHhC
Confidence 469999987643221111 000 011 1233455678999999998877554 2244455666554
No 101
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=86.66 E-value=0.65 Score=43.60 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=28.1
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEcc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFT 320 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~ 320 (399)
+++|+|++.......+++ . ..+..+..+|++||.+++-...
T Consensus 113 ~~fD~Ii~~~~l~~~~~~--~---------~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 113 GQFDVVTCMEMLEHVPDP--A---------SFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCccEEEEhhHhhccCCH--H---------HHHHHHHHHcCCCcEEEEEecC
Confidence 579999997665544322 1 2245567789999999987554
No 102
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=85.94 E-value=3.5 Score=41.73 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=16.6
Q ss_pred ceEEEeccCCChhHHHHHHh
Q psy15838 166 FTSIHLCEAPGAFITSLNHY 185 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~y 185 (399)
.++||+|+|+|.++..+.+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~ 101 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRV 101 (322)
T ss_pred CEEEEEeCCccHHHHHHHHh
Confidence 39999999999998876553
No 103
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=85.89 E-value=22 Score=34.83 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=52.5
Q ss_pred CcccEEEecCCCCCCCCC-chhHH-----HHHHH-HHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHh-cCCee
Q psy15838 269 SHCFLVTADGSFDCQGNP-GEQEI-----LVGKL-HYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLAC-LFTSV 340 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~-~~qe~-----~s~~L-~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~-~F~~V 340 (399)
..||+|+|.==..-+|.. +.++. ....+ +..-+..|-.+|++||.+.+= ... ....+++.+|+. -|+ .
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-~r~--erl~ei~~~l~~~~~~-~ 189 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-HRP--ERLAEIIELLKSYNLE-P 189 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-ecH--HHHHHHHHHHHhcCCC-c
Confidence 469999987555444433 11111 11222 445567788999999987542 222 235778888887 443 3
Q ss_pred eeecCCCCCCCCceEEEEEeeccCCc
Q psy15838 341 DLFKPATSKEGNSEIYVICRDFHSVC 366 (399)
Q Consensus 341 ~v~KP~aSR~~sSE~YlVc~gf~g~~ 366 (399)
.-.++..+|.+..=.-++-.+-++..
T Consensus 190 k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 190 KRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred eEEEEecCCCCCcceEEEEEEecCCC
Confidence 33344444444444445555555544
No 104
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=85.83 E-value=0.85 Score=47.79 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=26.5
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeE
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKI 318 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~ 318 (399)
..+|+|++..+...-.++. ....+.-+..+|++||.++++=
T Consensus 102 ~~fD~I~~~~~l~~l~~~~---------~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKE---------VENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCEEEEehhhhHHhCCHHH---------HHHHHHHHHHhcCCCeEEEEEe
Confidence 5699999987654332111 1233344668899999999973
No 105
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=85.49 E-value=4.8 Score=39.06 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=16.7
Q ss_pred ceEEEeccCCChhHHHHHHh
Q psy15838 166 FTSIHLCEAPGAFITSLNHY 185 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~y 185 (399)
.++||+|||.|.++..+...
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~ 106 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADA 106 (272)
T ss_pred CeEEEECCcCCHHHHHHHHh
Confidence 48999999999999876554
No 106
>PRK06922 hypothetical protein; Provisional
Probab=85.07 E-value=2.2 Score=47.24 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=15.6
Q ss_pred ceEEEeccCCChhHHHHHH
Q psy15838 166 FTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~ 184 (399)
.++||+|||+|.++..+..
T Consensus 420 ~rVLDIGCGTG~ls~~LA~ 438 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEE 438 (677)
T ss_pred CEEEEeCCCCCHHHHHHHH
Confidence 4999999999998875543
No 107
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=85.04 E-value=3.7 Score=38.18 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=25.3
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEc
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIF 319 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F 319 (399)
+.+|+|++-++....++ . ...+..+..+|+|||.+++--+
T Consensus 66 ~~fD~I~~~~~l~~~~~--~---------~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 66 DTYDLVFGFEVIHHIKD--K---------MDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCCCEeehHHHHHhCCC--H---------HHHHHHHHHHcCCCCEEEEEEc
Confidence 35888887655543321 1 1233445679999999998654
No 108
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=84.92 E-value=2.6 Score=41.09 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=24.4
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeE
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKI 318 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~ 318 (399)
.+.+|+|+|=...-. .........+.-....|+|||.+++=-
T Consensus 201 ~~~fD~I~crnvl~y---------f~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 201 LGDFDLIFCRNVLIY---------FDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred cCCCCEEEechhHHh---------CCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 357999998433211 111122333444557899999999743
No 109
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=84.80 E-value=15 Score=35.23 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=15.6
Q ss_pred ceEEEeccCCChhHHHHHH
Q psy15838 166 FTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~ 184 (399)
.++||||||.|..+..+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~ 76 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRR 76 (247)
T ss_pred CEEEEEcccCCHHHHHHHH
Confidence 3899999999998876544
No 110
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=84.25 E-value=3.8 Score=40.86 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=27.1
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVI 316 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl 316 (399)
.+++|+|+.|==.-..+..+.+ +-+...+..|+.+|++||.+++
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~-----~~y~~L~~~a~~ll~~gG~l~~ 236 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLE-----RDYKKLLRRAMKLLKPGGLLLT 236 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHH-----HHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHH-----HHHHHHHHHHHHhcCCCCEEEE
Confidence 3579999999654444443332 2234455678899999999763
No 111
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=83.75 E-value=0.56 Score=37.88 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=18.0
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEE
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNL 314 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~f 314 (399)
+.+|+|++=...... ++.+ ..+.-+.++|+|||.|
T Consensus 65 ~~fD~V~~~~vl~~l--~~~~---------~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL--EDIE---------AVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS----S-HH---------HHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhh--hhHH---------HHHHHHHHHcCCCCCC
Confidence 479999987666544 2222 3445577899999975
No 112
>KOG1975|consensus
Probab=83.50 E-value=1.9 Score=44.05 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=37.8
Q ss_pred cccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhc
Q psy15838 270 HCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACL 336 (399)
Q Consensus 270 ~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~ 336 (399)
++|+|-|-=+..-+-. .|+ -..+++.-|..+|+|||.||.=| +.+..|++.|+..
T Consensus 196 ~fDivScQF~~HYaFe---tee----~ar~~l~Nva~~LkpGG~FIgTi-----Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFE---TEE----SARIALRNVAKCLKPGGVFIGTI-----PDSDVIIKRLRAG 250 (389)
T ss_pred CcceeeeeeeEeeeec---cHH----HHHHHHHHHHhhcCCCcEEEEec-----CcHHHHHHHHHhc
Confidence 3899887666554321 122 24455666778999999998643 6678899999885
No 113
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=82.90 E-value=1.5 Score=42.66 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=18.1
Q ss_pred HHHHHhccCCCCEEEEeEccCCC
Q psy15838 301 VQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 301 l~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
|.=+.++|+|||.++|==|...+
T Consensus 139 L~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 139 LKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred HHHHHHhhcCCeEEEEEEcCCCC
Confidence 44467899999999888887754
No 114
>PLN02476 O-methyltransferase
Probab=82.41 E-value=8.6 Score=38.27 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=24.4
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVI 316 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl 316 (399)
+.+|+|.-|+.-. -...-+..++.+|++||.+|+
T Consensus 193 ~~FD~VFIDa~K~--------------~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 193 SSYDFAFVDADKR--------------MYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCCEEEECCCHH--------------HHHHHHHHHHHhcCCCcEEEE
Confidence 5799999998741 122233446789999999986
No 115
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=82.32 E-value=1 Score=45.62 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=26.0
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTI 321 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~ 321 (399)
+.||+|++-....- .++.++ .+.....+|+|||.+++-....
T Consensus 197 ~~FD~Vi~~~vLeH--v~d~~~---------~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 197 RKFDAVLSLEVIEH--VANPAE---------FCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred CCCCEEEEhhHHHh--cCCHHH---------HHHHHHHHcCCCcEEEEEECCc
Confidence 57999998654432 222221 2233346799999999887543
No 116
>PF12803 G-7-MTase: mRNA (guanine-7-)methyltransferase (G-7-MTase); InterPro: IPR024352 The Sendai virus RNA-dependent RNA polymerase complex, which consists of L and P proteins, participates in the synthesis of viral mRNAs that possess a methylated cap structure. The N-terminal part of the L protein acts as an RNA-dependent RNA polymerase (PF00946 from PFAM). This entry represents the following domain, which catalyses cap methylation through its mRNA (guanine-7-)methyltransferase (G-7-MTase) activity [].
Probab=82.10 E-value=1.5 Score=44.60 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=35.8
Q ss_pred chhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhh
Q psy15838 138 KPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYL 186 (399)
Q Consensus 138 ~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl 186 (399)
..|..|.||||-.||..--......+| ..|.||||.|+-++.+...+
T Consensus 276 ~vG~~STSwYKa~~l~~~l~~~~~~~g--~~LyLgEGSGamMt~~e~~~ 322 (324)
T PF12803_consen 276 RVGLNSTSWYKALELLSVLSRLQLPGG--DSLYLGEGSGAMMTLYEYLL 322 (324)
T ss_pred hccccchHHHHHHHHHHHHHhhcCCCC--CeEEEecCCchHHHHHHhhc
Confidence 468899999999998886654433222 78999999999998765543
No 117
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=81.18 E-value=17 Score=35.78 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=15.6
Q ss_pred ceEEEeccCCChhHHHHHH
Q psy15838 166 FTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~ 184 (399)
.++||+|||+|.++..+..
T Consensus 151 ~~vlDiG~G~G~~~~~~~~ 169 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLK 169 (306)
T ss_pred CEEEEeCCchhHHHHHHHH
Confidence 4999999999998875543
No 118
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=81.12 E-value=3 Score=43.46 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=28.1
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHH-HHHHHHHHHhccCCCCEEEEeEccC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKL-HYREVQIALSLLHNGGNLVIKIFTI 321 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L-~~~el~~Al~~Lr~GG~fVlK~F~~ 321 (399)
+.+|.|..--....... .+ .+| ...-+..+.++|++||.+.++.=.-
T Consensus 191 ~s~D~I~lnFPdPW~Kk---rH---RRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 191 NSVEKIFVHFPVPWDKK---PH---RRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CceeEEEEeCCCCcccc---ch---hhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 46888876432222111 12 122 3445566778999999999987554
No 119
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=80.98 E-value=11 Score=36.84 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=15.2
Q ss_pred eEEEeccCCChhHHHHHH
Q psy15838 167 TSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~ 184 (399)
++||||||.|.++.++..
T Consensus 123 ~vLDlGcG~G~~~~~la~ 140 (287)
T PRK12335 123 KALDLGCGQGRNSLYLAL 140 (287)
T ss_pred CEEEeCCCCCHHHHHHHH
Confidence 899999999998885533
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=79.74 E-value=12 Score=35.90 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=23.9
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVI 316 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl 316 (399)
+.+|+|..|+... ... .-+..++.+|++||.+|+
T Consensus 143 ~~fD~VfiDa~k~-----~y~---------~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 143 PEFDFAFVDADKP-----NYV---------HFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCEEEECCCHH-----HHH---------HHHHHHHHhcCCCeEEEE
Confidence 5799999998641 111 123456789999999886
No 121
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=79.67 E-value=8.5 Score=35.70 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.5
Q ss_pred ceEEEeccCCChhHHHHHH
Q psy15838 166 FTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~ 184 (399)
.++||+|+|.|.++..+.+
T Consensus 80 ~~VLeiG~GsG~~t~~la~ 98 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAH 98 (212)
T ss_pred CEEEEECCCccHHHHHHHH
Confidence 4999999999998875444
No 122
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=77.99 E-value=5.8 Score=39.00 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=82.1
Q ss_pred cchhHHHhh-hcccCchhhHHHHHHhhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhhcc
Q psy15838 111 VHLKTWHQH-TNFVNRSSKVVQSVKRFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLH 189 (399)
Q Consensus 111 ~~~~~w~~h-t~~~n~~~~i~~~vk~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~ 189 (399)
++|+.-+.| |..+||..+-+..|- +++.. .-.+|||-|-|=|-++-....+-..+
T Consensus 104 iEIdGIrMhrt~~tdP~~Dt~~Kv~-----------------------~V~~~-~G~rVLDtC~GLGYtAi~a~~rGA~~ 159 (287)
T COG2521 104 IEIDGIRMHRTKGTDPLEDTLAKVE-----------------------LVKVK-RGERVLDTCTGLGYTAIEALERGAIH 159 (287)
T ss_pred EEEccEEEecccCcCcHHHHHhhhh-----------------------eeccc-cCCEeeeeccCccHHHHHHHHcCCcE
Confidence 344555666 778899888777542 23221 11499999999987655443322211
Q ss_pred ------CCCCccceeccccCCCcCCCCCCcEEeccccccccCccccCCCccccCCCChHHHHHHHHhhhhhhccCCCCCC
Q psy15838 190 ------HPRMQWDWIANTLNPHYEGNSFDEMISDDRLILGTHRKWYFGPDNTGNILVQNFVSHFKQHIGFLLIHDTSLAP 263 (399)
Q Consensus 190 ------~~~~~w~~~a~sLnP~~e~n~~~~vI~dD~~~~~~~~~w~~G~d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~ 263 (399)
.+++- |. -+|||++..-... +.+ -+.||.. +.++.+.
T Consensus 160 VitvEkdp~VL--eL-a~lNPwSr~l~~~---~i~--------------iilGD~~--e~V~~~~--------------- 202 (287)
T COG2521 160 VITVEKDPNVL--EL-AKLNPWSRELFEI---AIK--------------IILGDAY--EVVKDFD--------------- 202 (287)
T ss_pred EEEEeeCCCeE--Ee-eccCCCCcccccc---ccE--------------EecccHH--HHHhcCC---------------
Confidence 12221 22 2478886532211 111 1567763 2343332
Q ss_pred CCCCCCcccEEEecCC-CCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE------eEccCCCCCHHHHHHHHHhc
Q psy15838 264 HCTHASHCFLVTADGS-FDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVI------KIFTIFESDTICLMYLLACL 336 (399)
Q Consensus 264 ~~~~~~~vDLV~ADGs-~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl------K~F~~~e~~t~~Ll~lL~~~ 336 (399)
...||.|+.|=- +...| |..+ .=.+.|+ ..+|++||-+.- |-+.+-. .-..+...|++.
T Consensus 203 ----D~sfDaIiHDPPRfS~Ag-----eLYs-eefY~El---~RiLkrgGrlFHYvG~Pg~ryrG~d-~~~gVa~RLr~v 268 (287)
T COG2521 203 ----DESFDAIIHDPPRFSLAG-----ELYS-EEFYREL---YRILKRGGRLFHYVGNPGKRYRGLD-LPKGVAERLRRV 268 (287)
T ss_pred ----ccccceEeeCCCccchhh-----hHhH-HHHHHHH---HHHcCcCCcEEEEeCCCCcccccCC-hhHHHHHHHHhc
Confidence 356999999953 22222 2222 2233333 469999998764 2333321 234566655543
Q ss_pred -CCeeeee
Q psy15838 337 -FTSVDLF 343 (399)
Q Consensus 337 -F~~V~v~ 343 (399)
|+.|...
T Consensus 269 GF~~v~~~ 276 (287)
T COG2521 269 GFEVVKKV 276 (287)
T ss_pred Cceeeeee
Confidence 6655543
No 123
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=77.52 E-value=19 Score=36.25 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=40.6
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHH-HhcCCeeeeecC
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLL-ACLFTSVDLFKP 345 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL-~~~F~~V~v~KP 345 (399)
.+++|+|+|.- .+..+..-.--+...|+|||.+|+--.-. .....+...+ ..-|.-+.+...
T Consensus 227 ~~~~DvIVANI--------------LA~vl~~La~~~~~~lkpgg~lIlSGIl~--~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 227 NGPFDVIVANI--------------LAEVLVELAPDIKRLLKPGGRLILSGILE--DQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred cCcccEEEehh--------------hHHHHHHHHHHHHHHcCCCceEEEEeehH--hHHHHHHHHHHhCCCeEeEEEec
Confidence 46899999853 33444455556778999999999876443 3356666666 446666655444
No 124
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=75.09 E-value=9.7 Score=35.27 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHHHhhhcCccchhHHHhhhcccCchhhHHHHHHhhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHH
Q psy15838 101 LNDVKSNLNHVHLKTWHQHTNFVNRSSKVVQSVKRFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFIT 180 (399)
Q Consensus 101 Ln~~K~~l~~~~~~~w~~ht~~~n~~~~i~~~vk~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsq 180 (399)
.+.+++-.|....+.|...-.. .+...+...++. +. .+..=.+.+.+..+...+. .+|||+|||+|.++.
T Consensus 10 ~~~v~~~~~~~~~~~w~~~y~~-~~~~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~----~~vLDvGcG~G~~~~ 79 (230)
T PRK07580 10 KSEVRTYFNRTGFDRWARIYSD-APVSKVRATVRA----GH-QRMRDTVLSWLPADGDLTG----LRILDAGCGVGSLSI 79 (230)
T ss_pred hhhhhHHHhhhccchHHHhhCc-CchhHHHHHhcc----hH-HHHHHHHHHHHHhcCCCCC----CEEEEEeCCCCHHHH
Confidence 3455666666666778654332 343444333321 11 1111133344444433332 489999999999887
Q ss_pred HHH
Q psy15838 181 SLN 183 (399)
Q Consensus 181 aln 183 (399)
.+.
T Consensus 80 ~l~ 82 (230)
T PRK07580 80 PLA 82 (230)
T ss_pred HHH
Confidence 654
No 125
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=73.93 E-value=13 Score=34.60 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHhhhcCccchhHHHhhhcccCchhhHHHHHHhhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHHH
Q psy15838 103 DVKSNLNHVHLKTWHQHTNFVNRSSKVVQSVKRFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSL 182 (399)
Q Consensus 103 ~~K~~l~~~~~~~w~~ht~~~n~~~~i~~~vk~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqal 182 (399)
+++...|+.....|......-+.-..+.+.++ .+- ....-++.+.+.. .+.+ ..++||+|||.|.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~l~~-~~~~----~~~vLDiGcG~G~~~~~l 73 (219)
T TIGR02021 4 QVRHYFDGTAFQRWARIYGSGDPVSRVRQTVR----EGR-AAMRRKLLDWLPK-DPLK----GKRVLDAGCGTGLLSIEL 73 (219)
T ss_pred HHHHHhCchhHHHHHHhhCCchhhHHHHHHHH----HHH-HHHHHHHHHHHhc-CCCC----CCEEEEEeCCCCHHHHHH
Confidence 56777788778888665554333333333332 221 1333345555543 2222 249999999999998865
Q ss_pred H
Q psy15838 183 N 183 (399)
Q Consensus 183 n 183 (399)
.
T Consensus 74 a 74 (219)
T TIGR02021 74 A 74 (219)
T ss_pred H
Confidence 3
No 126
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=72.76 E-value=7.8 Score=37.89 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=25.7
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEcc
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFT 320 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~ 320 (399)
.++||+|||==. ..+.++.+. -+..+-+++||||.+++-.-.
T Consensus 122 ~~~FDvV~cmEV--lEHv~dp~~---------~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 122 GGQFDVVTCMEV--LEHVPDPES---------FLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CCCccEEEEhhH--HHccCCHHH---------HHHHHHHHcCCCcEEEEeccc
Confidence 478999997211 123444443 233466799999998765443
No 127
>PRK00536 speE spermidine synthase; Provisional
Probab=71.48 E-value=8.9 Score=37.80 Aligned_cols=75 Identities=9% Similarity=0.020 Sum_probs=46.9
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC--CCCHHHHHHHHHhcCCeeeeecCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF--ESDTICLMYLLACLFTSVDLFKPA 346 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~--e~~t~~Ll~lL~~~F~~V~v~KP~ 346 (399)
..+|+|+.|..++ .+.. ..+.+.|++||.||+-.=..+ .....++...|+..|..|..+-..
T Consensus 138 ~~fDVIIvDs~~~-------~~fy---------~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~ 201 (262)
T PRK00536 138 KKYDLIICLQEPD-------IHKI---------DGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAP 201 (262)
T ss_pred CcCCEEEEcCCCC-------hHHH---------HHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEec
Confidence 5799999998654 1111 335678999999999542221 233567778899999877665443
Q ss_pred CCCCCCceEEEEEe
Q psy15838 347 TSKEGNSEIYVICR 360 (399)
Q Consensus 347 aSR~~sSE~YlVc~ 360 (399)
-+--+ .=-|++|.
T Consensus 202 vp~~g-~wgf~~aS 214 (262)
T PRK00536 202 LRILS-NKGYIYAS 214 (262)
T ss_pred CCCcc-hhhhheec
Confidence 31112 23466664
No 128
>KOG1540|consensus
Probab=70.95 E-value=17 Score=36.15 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=26.1
Q ss_pred HHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCCee
Q psy15838 300 EVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSV 340 (399)
Q Consensus 300 el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~~V 340 (399)
++.-|.++|+|||.|.|--|.-.++.. |..+....+-+|
T Consensus 196 ~l~EAYRVLKpGGrf~cLeFskv~~~~--l~~fy~~ysf~V 234 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFSCLEFSKVENEP--LKWFYDQYSFDV 234 (296)
T ss_pred HHHHHHHhcCCCcEEEEEEccccccHH--HHHHHHhhhhhh
Confidence 455689999999999999888766323 333333444444
No 129
>PRK06202 hypothetical protein; Provisional
Probab=69.74 E-value=5.3 Score=37.64 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=24.7
Q ss_pred ceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCC
Q psy15838 166 FTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNP 204 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP 204 (399)
.+++|||||+|.++..+..+....++ .++.+|++++|
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~--~~~v~gvD~s~ 98 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGL--RLEVTAIDPDP 98 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCC--CcEEEEEcCCH
Confidence 59999999999998877665543221 23455665544
No 130
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=68.26 E-value=2.6 Score=41.37 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.3
Q ss_pred ceEEEeccCCChhHHHHHH
Q psy15838 166 FTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~ 184 (399)
++++||+||.||++..+..
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~ 19 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEK 19 (275)
T ss_pred CcEEEEccCcchHHHHHHH
Confidence 4799999999999987754
No 131
>PRK14968 putative methyltransferase; Provisional
Probab=66.17 E-value=64 Score=28.53 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=40.8
Q ss_pred cccEEEecCCCCCCCCCchh-----HH------HHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcCC
Q psy15838 270 HCFLVTADGSFDCQGNPGEQ-----EI------LVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFT 338 (399)
Q Consensus 270 ~vDLV~ADGs~d~sg~~~~q-----e~------~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F~ 338 (399)
.+|+|+++......+ +..+ +. .........+.-+..+|++||.+++=+..... ...+...+...--
T Consensus 90 ~~d~vi~n~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--~~~l~~~~~~~g~ 166 (188)
T PRK14968 90 KFDVILFNPPYLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--EDEVLEYLEKLGF 166 (188)
T ss_pred CceEEEECCCcCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--HHHHHHHHHHCCC
Confidence 699999876543322 1100 00 00122334466678999999999987766533 4556666665443
Q ss_pred eeeeec
Q psy15838 339 SVDLFK 344 (399)
Q Consensus 339 ~V~v~K 344 (399)
++....
T Consensus 167 ~~~~~~ 172 (188)
T PRK14968 167 EAEVVA 172 (188)
T ss_pred eeeeee
Confidence 444433
No 132
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=62.30 E-value=6.2 Score=31.97 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=20.2
Q ss_pred EEEeccCCChhHHHHHHhhhccCCCCccceeccccCC
Q psy15838 168 SIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNP 204 (399)
Q Consensus 168 vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP 204 (399)
|||||||+|..+..+.++. ..++ ..++.+++++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~--~~~~~gvD~s~ 34 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGP--SSRVIGVDISP 34 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS--------SEEEEEES-H
T ss_pred CEEeecCCcHHHHHHHHHh-hhcc--cceEEEEECCH
Confidence 6999999999999887765 1111 13456666654
No 133
>PRK10458 DNA cytosine methylase; Provisional
Probab=61.10 E-value=37 Score=36.25 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.1
Q ss_pred CCceEEEeccCCChhHHHHHH
Q psy15838 164 NSFTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 164 ~~~~vlDLceaPGgFsqaln~ 184 (399)
..++++||+||-||++..+..
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~ 107 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEA 107 (467)
T ss_pred CCceEEEeCcCccHHHHHHHH
Confidence 468999999999999987644
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.36 E-value=20 Score=34.40 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=13.5
Q ss_pred ceEEEeccCCChhHHHHHH
Q psy15838 166 FTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~ 184 (399)
.+||++|+|.| |.+|+.-
T Consensus 74 ~~VLEIGtGsG-Y~aAvla 91 (209)
T COG2518 74 DRVLEIGTGSG-YQAAVLA 91 (209)
T ss_pred CeEEEECCCch-HHHHHHH
Confidence 49999999996 5555443
No 135
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=59.31 E-value=7.9 Score=36.60 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=25.0
Q ss_pred CCCCCCCCceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCC
Q psy15838 158 IVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNP 204 (399)
Q Consensus 158 l~~~~~~~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP 204 (399)
+++++. +|||||||-|...++|.+ ++ . -.++|+.+++
T Consensus 10 ~I~pgs---rVLDLGCGdG~LL~~L~~----~k-~--v~g~GvEid~ 46 (193)
T PF07021_consen 10 WIEPGS---RVLDLGCGDGELLAYLKD----EK-Q--VDGYGVEIDP 46 (193)
T ss_pred HcCCCC---EEEecCCCchHHHHHHHH----hc-C--CeEEEEecCH
Confidence 566665 999999999998875544 21 1 2356666654
No 136
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=57.17 E-value=16 Score=35.74 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.6
Q ss_pred eEEEeccCCChhHHHHHHh
Q psy15838 167 TSIHLCEAPGAFITSLNHY 185 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~y 185 (399)
+++|+|||+|+++.++..+
T Consensus 45 ~VLEiG~G~G~lt~~L~~~ 63 (272)
T PRK00274 45 NVLEIGPGLGALTEPLLER 63 (272)
T ss_pred eEEEeCCCccHHHHHHHHh
Confidence 8999999999999876554
No 137
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=54.54 E-value=33 Score=33.91 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=44.9
Q ss_pred cccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhc-CCeee-------
Q psy15838 270 HCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACL-FTSVD------- 341 (399)
Q Consensus 270 ~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~-F~~V~------- 341 (399)
.||.|+.|+--.. + .+.-+-..|++||.+++ |..+-.....+...|... |-.++
T Consensus 163 ~vDav~LDmp~PW-------~---------~le~~~~~Lkpgg~~~~--y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R 224 (256)
T COG2519 163 DVDAVFLDLPDPW-------N---------VLEHVSDALKPGGVVVV--YSPTVEQVEKTVEALRERGFVDIEAVETLVR 224 (256)
T ss_pred ccCEEEEcCCChH-------H---------HHHHHHHHhCCCcEEEE--EcCCHHHHHHHHHHHHhcCccchhhheeeeh
Confidence 6999999986442 1 23446678999999886 332222333344445444 55443
Q ss_pred --eecCCCCCCCCce----EEEEEeec
Q psy15838 342 --LFKPATSKEGNSE----IYVICRDF 362 (399)
Q Consensus 342 --v~KP~aSR~~sSE----~YlVc~gf 362 (399)
-+++.+.||.+.- -|||..-+
T Consensus 225 ~~~v~~~~~RP~~~~v~HTgyivf~R~ 251 (256)
T COG2519 225 RWEVRKEATRPETRMVGHTGYIVFARK 251 (256)
T ss_pred eeeecccccCcccccccceeEEEEEee
Confidence 3577888888642 46665443
No 138
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=54.36 E-value=5.6 Score=38.54 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=25.4
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEcc
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFT 320 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~ 320 (399)
...||+|.+|-+-. .|..+ .+.-|-..|++||.|++-+-.
T Consensus 141 v~~VDvI~~DVaQp------~Qa~I-------~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 141 VEMVDVIFQDVAQP------DQARI-------AALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp S--EEEEEEE-SST------THHHH-------HHHHHHHHEEEEEEEEEEEEH
T ss_pred cccccEEEecCCCh------HHHHH-------HHHHHHhhccCCcEEEEEEec
Confidence 34799999999844 23222 233455689999999976654
No 139
>KOG1271|consensus
Probab=54.11 E-value=12 Score=35.58 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=39.0
Q ss_pred CCcccEEEecCCCCCCCCC-chhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhc-CCeeeeec
Q psy15838 268 ASHCFLVTADGSFDCQGNP-GEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACL-FTSVDLFK 344 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~-~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~-F~~V~v~K 344 (399)
.+++|||+--|-.|.-+.. +.- ..+| ..-+-.--++|++||.||+=- ......+|...+... |+.+.-++
T Consensus 134 ~~qfdlvlDKGT~DAisLs~d~~---~~r~-~~Y~d~v~~ll~~~gifvItS---CN~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 134 SGQFDLVLDKGTLDAISLSPDGP---VGRL-VVYLDSVEKLLSPGGIFVITS---CNFTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred ccceeEEeecCceeeeecCCCCc---ccce-eeehhhHhhccCCCcEEEEEe---cCccHHHHHHHHhcCCeEEEEeec
Confidence 3679999988876654322 111 1111 112233457899999999832 222245566666554 66555544
No 140
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=53.38 E-value=7.5 Score=33.36 Aligned_cols=44 Identities=18% Similarity=0.078 Sum_probs=32.1
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF 322 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~ 322 (399)
.+.+|+|+|=.+...-. + ....+.....+|+|||.+++=.....
T Consensus 76 ~~~fD~i~~~~~l~~~~--d---------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLP--D---------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESSGGGSS--H---------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHHHhhcc--c---------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 35799999988776432 2 22344556679999999999998763
No 141
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=52.62 E-value=20 Score=36.05 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhh
Q psy15838 149 FHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYL 186 (399)
Q Consensus 149 L~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl 186 (399)
|.|+++.+.+-+. ..+||.++|-||.+.++.+.+
T Consensus 8 l~Evl~~L~~~pg----~~vlD~TlG~GGhS~~il~~~ 41 (296)
T PRK00050 8 LDEVVDALAIKPD----GIYVDGTFGGGGHSRAILERL 41 (296)
T ss_pred HHHHHHhhCCCCC----CEEEEeCcCChHHHHHHHHhC
Confidence 3467777765443 289999999999999887765
No 142
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=51.54 E-value=26 Score=33.12 Aligned_cols=35 Identities=14% Similarity=-0.029 Sum_probs=22.2
Q ss_pred ceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCC
Q psy15838 166 FTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNP 204 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP 204 (399)
.++||||||+|.++..+...+.. ..++.+|++++|
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~----p~~~v~gvD~s~ 89 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQ----PNVKIIGIDNSQ 89 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCC----CCCeEEEEeCCH
Confidence 38999999999998765443211 123455665543
No 143
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=51.44 E-value=12 Score=32.64 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=20.7
Q ss_pred CCceEEEeccCCChhHHHHHHhhhc
Q psy15838 164 NSFTSIHLCEAPGAFITSLNHYLKL 188 (399)
Q Consensus 164 ~~~~vlDLceaPGgFsqaln~yl~~ 188 (399)
....+||+|+|=|--+.+|.+++..
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~ 49 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCN 49 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHh
Confidence 4579999999999888888886643
No 144
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=50.51 E-value=20 Score=33.63 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.8
Q ss_pred eEEEeccCCChhHHHHHH
Q psy15838 167 TSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~ 184 (399)
++||+|||+|.++..+..
T Consensus 46 ~VLDiGCG~G~~~~~L~~ 63 (204)
T TIGR03587 46 SILELGANIGMNLAALKR 63 (204)
T ss_pred cEEEEecCCCHHHHHHHH
Confidence 899999999999987654
No 145
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=50.37 E-value=8.8 Score=38.63 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=16.8
Q ss_pred CceEEEeccCCChhHHHHHH
Q psy15838 165 SFTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 165 ~~~vlDLceaPGgFsqaln~ 184 (399)
.++++||++|-||++..+..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ 22 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEE 22 (328)
T ss_pred CceEEeeccCCchHHHHHHh
Confidence 47899999999999986544
No 146
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=50.24 E-value=31 Score=34.86 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=37.3
Q ss_pred HHHhhhcCccchhHHHhhhcccCchhhHHHHHHhhcchhhhHHHH-HHHHHHHHhCCCCCCCCCCceEEEeccCCChhHH
Q psy15838 102 NDVKSNLNHVHLKTWHQHTNFVNRSSKVVQSVKRFIKPQLATQAW-CKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFIT 180 (399)
Q Consensus 102 n~~K~~l~~~~~~~w~~ht~~~n~~~~i~~~vk~~~~~e~~trAw-~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsq 180 (399)
..+++-+|....+.|...-...|....+.-.++ .+ ...+ -++.+......-.+ ..++||||||.|.++.
T Consensus 91 ~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~----~~--~~~~v~~~l~~l~~~~~~~----~~~VLDlGcGtG~~a~ 160 (315)
T PLN02585 91 EVVREYFNTTGFERWRKIYGETDEVNKVQLDIR----LG--HAQTVEKVLLWLAEDGSLA----GVTVCDAGCGTGSLAI 160 (315)
T ss_pred HHHHHHhcccchhhHHHhcCCccccCceeeecc----cC--hHHHHHHHHHHHHhcCCCC----CCEEEEecCCCCHHHH
Confidence 456777777777788655443333322211111 00 1111 12233333321112 2499999999999887
Q ss_pred HHHH
Q psy15838 181 SLNH 184 (399)
Q Consensus 181 aln~ 184 (399)
.+..
T Consensus 161 ~la~ 164 (315)
T PLN02585 161 PLAL 164 (315)
T ss_pred HHHH
Confidence 5543
No 147
>KOG3420|consensus
Probab=49.31 E-value=43 Score=30.90 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEeccCCChhHHH
Q psy15838 145 AWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITS 181 (399)
Q Consensus 145 Aw~KL~EId~~f~l~~~~~~~~~vlDLceaPGgFsqa 181 (399)
|+.-++-|.+.|.=+.+ ..+.||||+-|=-+-+
T Consensus 33 AasM~~~Ih~TygdiEg----kkl~DLgcgcGmLs~a 65 (185)
T KOG3420|consen 33 AASMLYTIHNTYGDIEG----KKLKDLGCGCGMLSIA 65 (185)
T ss_pred HHHHHHHHHhhhccccC----cchhhhcCchhhhHHH
Confidence 67788999999986654 4889999999976633
No 148
>PRK11524 putative methyltransferase; Provisional
Probab=49.30 E-value=66 Score=31.59 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=40.8
Q ss_pred CcccEEEecCCCCCCC-----CCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhcC---Cee
Q psy15838 269 SHCFLVTADGSFDCQG-----NPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLF---TSV 340 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg-----~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~F---~~V 340 (399)
..+|||++|=-..... ....+...-......-+..+..+|++||.|++ +.... ....+...+...| ..+
T Consensus 26 ~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i--~~~~~-~~~~~~~~~~~~f~~~~~i 102 (284)
T PRK11524 26 ESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI--MNSTE-NMPFIDLYCRKLFTIKSRI 102 (284)
T ss_pred CcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE--EcCch-hhhHHHHHHhcCcceEEEE
Confidence 4799999995443211 11111112224455667788899999999998 33321 1222223344433 455
Q ss_pred eeecCC
Q psy15838 341 DLFKPA 346 (399)
Q Consensus 341 ~v~KP~ 346 (399)
...|+.
T Consensus 103 iW~k~~ 108 (284)
T PRK11524 103 VWSYDS 108 (284)
T ss_pred EEEeCC
Confidence 666754
No 149
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=48.44 E-value=19 Score=34.78 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=48.7
Q ss_pred cccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC--CCCHHHHHHHHHhcCCeeeeecC-C
Q psy15838 270 HCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF--ESDTICLMYLLACLFTSVDLFKP-A 346 (399)
Q Consensus 270 ~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~--e~~t~~Ll~lL~~~F~~V~v~KP-~ 346 (399)
++|+|+.|.....+-... +- ..--...+.+.|++||.+++-.-... ......+...|+..|..|..+-- .
T Consensus 150 ~yDvIi~D~~dp~~~~~~----l~---t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~v 222 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPN----LF---TREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYV 222 (246)
T ss_dssp -EEEEEEESSSTTSCGGG----GS---SHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred cccEEEEeCCCCCCCccc----cc---CHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEc
Confidence 899999999864332111 10 11122346679999999999873322 22344456679999997776532 2
Q ss_pred CCCCCCceEEEEEeec
Q psy15838 347 TSKEGNSEIYVICRDF 362 (399)
Q Consensus 347 aSR~~sSE~YlVc~gf 362 (399)
-|=++.-=.|++|.+-
T Consensus 223 P~~~~~~~~~~~~s~~ 238 (246)
T PF01564_consen 223 PSYGSGWWSFASASKD 238 (246)
T ss_dssp TTSCSSEEEEEEEESS
T ss_pred CeecccceeEEEEeCC
Confidence 2223332345555543
No 150
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=47.58 E-value=81 Score=30.16 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=31.3
Q ss_pred cccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCE
Q psy15838 234 NTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGN 313 (399)
Q Consensus 234 ~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~ 313 (399)
.+||-.+++++..++... ......||+-|+...... ...++..=-.++.+|+.
T Consensus 90 i~Gds~d~~~~~~v~~~~---------------~~~~~vlVilDs~H~~~h------------vl~eL~~y~plv~~G~Y 142 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELA---------------SPPHPVLVILDSSHTHEH------------VLAELEAYAPLVSPGSY 142 (206)
T ss_dssp EES-SSSTHHHHTSGSS-------------------SSEEEEESS----SS------------HHHHHHHHHHT--TT-E
T ss_pred EECCCCCHHHHHHHHHhh---------------ccCCceEEEECCCccHHH------------HHHHHHHhCccCCCCCE
Confidence 899999999998776511 124566999999855321 22334444568889999
Q ss_pred EEE
Q psy15838 314 LVI 316 (399)
Q Consensus 314 fVl 316 (399)
+|+
T Consensus 143 ~IV 145 (206)
T PF04989_consen 143 LIV 145 (206)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 151
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=44.98 E-value=25 Score=31.57 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=41.5
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCC---HHHHHHHHHh
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESD---TICLMYLLAC 335 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~---t~~Ll~lL~~ 335 (399)
+++|+|+-.-+---.|++..- -...-...++..|+.+|++||-+++=+|.|.+.. ...+...+..
T Consensus 45 ~~v~~~iFNLGYLPggDk~i~--T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDKSIT--TKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLAS 112 (140)
T ss_dssp --EEEEEEEESB-CTS-TTSB----HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHT
T ss_pred CCcCEEEEECCcCCCCCCCCC--cCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 478999877776666665443 2245577889999999999999999999997532 3334444444
No 152
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=42.54 E-value=25 Score=28.56 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=25.2
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEE
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVI 316 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVl 316 (399)
+++|||.-||...- +-....+..++..|++||.+|+
T Consensus 68 ~~~dli~iDg~H~~------------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 68 GPIDLIFIDGDHSY------------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --EEEEEEES---H------------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCEEEEEECCCCCH------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 46999999997652 3355667788999999998875
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=42.17 E-value=22 Score=32.49 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=15.1
Q ss_pred eEEEeccCCChhHHHHH
Q psy15838 167 TSIHLCEAPGAFITSLN 183 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln 183 (399)
+++|+|||+|.++.++.
T Consensus 16 ~iLDiGcG~G~~~~~l~ 32 (194)
T TIGR02081 16 RVLDLGCGDGELLALLR 32 (194)
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 89999999999988654
No 154
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.15 E-value=20 Score=35.94 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.6
Q ss_pred EEEeccCCChhHHHHHH
Q psy15838 168 SIHLCEAPGAFITSLNH 184 (399)
Q Consensus 168 vlDLceaPGgFsqaln~ 184 (399)
|+||+||-||++..+..
T Consensus 1 vidLF~G~GG~~~Gl~~ 17 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ 17 (315)
T ss_pred CEEEecCccHHHHHHHH
Confidence 58999999999987654
No 155
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=41.95 E-value=36 Score=32.63 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=17.0
Q ss_pred ceEEEeccCCChhHHHHHHh
Q psy15838 166 FTSIHLCEAPGAFITSLNHY 185 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~y 185 (399)
.+++|+|+|+|+++..+.+.
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~ 50 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKR 50 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHh
Confidence 38999999999999976553
No 156
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=39.51 E-value=36 Score=33.41 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHHhhh
Q psy15838 149 FHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLK 187 (399)
Q Consensus 149 L~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~yl~ 187 (399)
|.||..+.+-+.+ .++||+|+|||.-+=|++....
T Consensus 22 l~El~~r~p~f~P----~~vLD~GsGpGta~wAa~~~~~ 56 (274)
T PF09243_consen 22 LSELRKRLPDFRP----RSVLDFGSGPGTALWAAREVWP 56 (274)
T ss_pred HHHHHHhCcCCCC----ceEEEecCChHHHHHHHHHHhc
Confidence 6777777654444 3899999999987777766544
No 157
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=39.31 E-value=41 Score=30.02 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.6
Q ss_pred eEEEeccCCChhHHHHHH
Q psy15838 167 TSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~ 184 (399)
+++|+|+|+|.++..+..
T Consensus 16 ~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 16 TVLEIGPGKGALTEELLE 33 (169)
T ss_pred EEEEECCCccHHHHHHHh
Confidence 899999999999986544
No 158
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=36.74 E-value=1e+02 Score=29.01 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=21.6
Q ss_pred HHHHHhCCCCCCCCCCceEEEeccCCChhHHHHHH
Q psy15838 150 HEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 150 ~EId~~f~l~~~~~~~~~vlDLceaPGgFsqaln~ 184 (399)
..+.+.+.+-.. .++||||+|.|.|+.++..
T Consensus 90 ~~~~~~~d~~~~----~~vvDvGGG~G~~~~~l~~ 120 (241)
T PF00891_consen 90 DILLEAFDFSGF----KTVVDVGGGSGHFAIALAR 120 (241)
T ss_dssp HHHHHHSTTTTS----SEEEEET-TTSHHHHHHHH
T ss_pred hhhhccccccCc----cEEEeccCcchHHHHHHHH
Confidence 456666664332 3899999999999987644
No 159
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=36.61 E-value=77 Score=27.53 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHhhhcCccchhHHHhhhcccCchhhHHHHHHhhcchhhhHHHHHHHHHHHHhCCCCCCCCCCceEEEeccCCCh
Q psy15838 100 KLNDVKSNLNHVHLKTWHQHTNFVNRSSKVVQSVKRFIKPQLATQAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGA 177 (399)
Q Consensus 100 ~Ln~~K~~l~~~~~~~w~~ht~~~n~~~~i~~~vk~~~~~e~~trAw~KL~EId~~f~l~~~~~~~~~vlDLceaPGg 177 (399)
.+.++|++-..-=++.| +-.|||.+.|-..+ +=|+| |.|+=+.-..- .....|||||||-|=
T Consensus 10 ~Y~~LK~kYa~~lv~~W---~E~TdP~K~VfEDl---------aIAAy-Li~LW~~~~~~---~~~~~FVDlGCGNGL 71 (112)
T PF07757_consen 10 TYQRLKEKYARWLVDNW---PESTDPQKHVFEDL---------AIAAY-LIELWRDMYGE---QKFQGFVDLGCGNGL 71 (112)
T ss_pred HHHHHHHHHHHHHHHhC---cccCCchhhHHHHH---------HHHHH-HHHHHhcccCC---CCCCceEEccCCchH
Confidence 34445555443335677 55678988888764 34554 34444432211 234589999999984
No 160
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=36.44 E-value=32 Score=28.64 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=38.4
Q ss_pred CCCccccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccC
Q psy15838 230 FGPDNTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLH 309 (399)
Q Consensus 230 ~G~d~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr 309 (399)
+|.+..-|-.+.+..+.+++.+ ...++|+|+ +|.|.+. .+..++.+|+
T Consensus 33 ~Ga~~~~~~~~~~~~~~i~~~~---------------~~~~~d~vi-----d~~g~~~------------~~~~~~~~l~ 80 (130)
T PF00107_consen 33 LGADHVIDYSDDDFVEQIRELT---------------GGRGVDVVI-----DCVGSGD------------TLQEAIKLLR 80 (130)
T ss_dssp TTESEEEETTTSSHHHHHHHHT---------------TTSSEEEEE-----ESSSSHH------------HHHHHHHHEE
T ss_pred hccccccccccccccccccccc---------------ccccceEEE-----EecCcHH------------HHHHHHHHhc
Confidence 3555555555555777777632 135788876 7777432 2334778999
Q ss_pred CCCEEEEeEccC
Q psy15838 310 NGGNLVIKIFTI 321 (399)
Q Consensus 310 ~GG~fVlK~F~~ 321 (399)
+||.+|+=-..+
T Consensus 81 ~~G~~v~vg~~~ 92 (130)
T PF00107_consen 81 PGGRIVVVGVYG 92 (130)
T ss_dssp EEEEEEEESSTS
T ss_pred cCCEEEEEEccC
Confidence 999998866555
No 161
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=35.58 E-value=81 Score=30.48 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=20.6
Q ss_pred HHHhccCCCCEEEEeEcc-CCCCCHHHHHHHHHhc
Q psy15838 303 IALSLLHNGGNLVIKIFT-IFESDTICLMYLLACL 336 (399)
Q Consensus 303 ~Al~~Lr~GG~fVlK~F~-~~e~~t~~Ll~lL~~~ 336 (399)
=|.++|++||.+.+===. -|+ ....++..+..+
T Consensus 143 EA~RvLK~~G~L~IAEV~SRf~-~~~~F~~~~~~~ 176 (219)
T PF05148_consen 143 EANRVLKPGGILKIAEVKSRFE-NVKQFIKALKKL 176 (219)
T ss_dssp HHHHHEEEEEEEEEEEEGGG-S--HHHHHHHHHCT
T ss_pred HHHheeccCcEEEEEEecccCc-CHHHHHHHHHHC
Confidence 478899999987553322 333 456677776654
No 162
>PRK13699 putative methylase; Provisional
Probab=34.78 E-value=72 Score=30.48 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=42.5
Q ss_pred CCcccEEEec-----CCCCCCCCC-chhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHh-cC---
Q psy15838 268 ASHCFLVTAD-----GSFDCQGNP-GEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLAC-LF--- 337 (399)
Q Consensus 268 ~~~vDLV~AD-----Gs~d~sg~~-~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~-~F--- 337 (399)
...+|||+.| |.-+..|.. ..+ .........+.-+.++|++||.+++ |.+.. ....++..+.. -|
T Consensus 18 d~SVDLIiTDPPY~i~~~~~~~~~~~~~--~~~ew~~~~l~E~~RVLKpgg~l~i--f~~~~-~~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 18 DNAVDFILTDPPYLVGFRDRQGRTIAGD--KTDEWLQPACNEMYRVLKKDALMVS--FYGWN-RVDRFMAAWKNAGFSVV 92 (227)
T ss_pred ccccceEEeCCCcccccccCCCcccccc--cHHHHHHHHHHHHHHHcCCCCEEEE--Eeccc-cHHHHHHHHHHCCCEEe
Confidence 3579999999 322222211 011 1223444556667799999999986 44322 12334444443 23
Q ss_pred CeeeeecCCCC
Q psy15838 338 TSVDLFKPATS 348 (399)
Q Consensus 338 ~~V~v~KP~aS 348 (399)
+.+...|+...
T Consensus 93 ~~IiW~K~~~~ 103 (227)
T PRK13699 93 GHLVFTKNYTS 103 (227)
T ss_pred eEEEEECCCCC
Confidence 45777888654
No 163
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=34.25 E-value=54 Score=30.87 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=19.2
Q ss_pred HHHHhCCCCCCCCCCceEEEeccCCChhHHHH
Q psy15838 151 EIVHSYNIVPQQENSFTSIHLCEAPGAFITSL 182 (399)
Q Consensus 151 EId~~f~l~~~~~~~~~vlDLceaPGgFsqal 182 (399)
|+.+..++++++ ++||||||-|-=+-+|
T Consensus 21 ~v~~a~~~~~~g----~~LDlgcG~GRNalyL 48 (192)
T PF03848_consen 21 EVLEAVPLLKPG----KALDLGCGEGRNALYL 48 (192)
T ss_dssp HHHHHCTTS-SS----EEEEES-TTSHHHHHH
T ss_pred HHHHHHhhcCCC----cEEEcCCCCcHHHHHH
Confidence 455556677654 9999999999977743
No 164
>KOG3010|consensus
Probab=33.70 E-value=2.3e+02 Score=28.04 Aligned_cols=56 Identities=14% Similarity=-0.007 Sum_probs=29.3
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCC-EEEEeEccCCCCCHHHHHHHHHh
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGG-NLVIKIFTIFESDTICLMYLLAC 335 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG-~fVlK~F~~~e~~t~~Ll~lL~~ 335 (399)
..+||||+|==++..=..+ .....|-++||+.| .+.+=.|........++...+.+
T Consensus 98 e~SVDlI~~Aqa~HWFdle------------~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r 154 (261)
T KOG3010|consen 98 EESVDLITAAQAVHWFDLE------------RFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLR 154 (261)
T ss_pred CcceeeehhhhhHHhhchH------------HHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHH
Confidence 3568888864443322111 11234667888766 77777776322334444444333
No 165
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=32.42 E-value=2.1e+02 Score=25.71 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEeEccCCCCC-HHH-HHHHHH--hcCCeeeeecC
Q psy15838 294 GKLHYREVQIALSLLHNGGNLVIKIFTIFESD-TIC-LMYLLA--CLFTSVDLFKP 345 (399)
Q Consensus 294 ~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~-t~~-Ll~lL~--~~F~~V~v~KP 345 (399)
...+..-+..+.++|++||++++=+=...... ... +...+. .....+...|+
T Consensus 32 ~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 32 LEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheeccceeEec
Confidence 34566677888999999999998766654432 233 333444 23356777787
No 166
>KOG1596|consensus
Probab=32.22 E-value=58 Score=32.39 Aligned_cols=43 Identities=26% Similarity=0.124 Sum_probs=30.7
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
..-+|+|.||-+... |.. ...+-|-..|++||.||+-+-...-
T Consensus 224 VgmVDvIFaDvaqpd------q~R-------ivaLNA~~FLk~gGhfvisikanci 266 (317)
T KOG1596|consen 224 VGMVDVIFADVAQPD------QAR-------IVALNAQYFLKNGGHFVISIKANCI 266 (317)
T ss_pred eeeEEEEeccCCCch------hhh-------hhhhhhhhhhccCCeEEEEEecccc
Confidence 357999999998752 222 2234467799999999998876553
No 167
>KOG2940|consensus
Probab=31.85 E-value=40 Score=33.27 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=31.2
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
...+|||++-++...+.+- .+- +. -+-..|+|.|-||--||.+.+
T Consensus 135 ens~DLiisSlslHW~NdL-Pg~-----m~-----~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWTNDL-PGS-----MI-----QCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred ccchhhhhhhhhhhhhccC-chH-----HH-----HHHHhcCCCccchhHHhcccc
Confidence 3579999999998766321 111 11 133478999999999999965
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=31.81 E-value=33 Score=36.39 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=25.9
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCC
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIF 322 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~ 322 (399)
.+||+|+|.-.-....+ +++-. | +..+-+.|++||.+|=--++.+
T Consensus 257 ekvDIIVSElLGsfg~n-----El~pE---~-Lda~~rfLkp~Gi~IP~~~t~y 301 (448)
T PF05185_consen 257 EKVDIIVSELLGSFGDN-----ELSPE---C-LDAADRFLKPDGIMIPSSYTSY 301 (448)
T ss_dssp S-EEEEEE---BTTBTT-----TSHHH---H-HHHGGGGEEEEEEEESSEEEEE
T ss_pred CceeEEEEeccCCcccc-----ccCHH---H-HHHHHhhcCCCCEEeCcchhhE
Confidence 47999999876443322 23222 2 5667889999998875544443
No 169
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=29.62 E-value=1.8e+02 Score=27.79 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=40.8
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccC-------CCCCHHHHHHHHHhcCCee
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTI-------FESDTICLMYLLACLFTSV 340 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~-------~e~~t~~Ll~lL~~~F~~V 340 (399)
.++||||+.=.....-+. . .-....+......|+|||.+|+=.+.- .......++.+|...+.+|
T Consensus 104 ~~~FDLIV~SEVlYYL~~--~------~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~ 175 (201)
T PF05401_consen 104 EGRFDLIVLSEVLYYLDD--A------EDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEV 175 (201)
T ss_dssp SS-EEEEEEES-GGGSSS--H------HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEE
T ss_pred CCCeeEEEEehHhHcCCC--H------HHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhe
Confidence 467999885443332211 1 112233445667999999999976642 1223566888999999998
Q ss_pred eee
Q psy15838 341 DLF 343 (399)
Q Consensus 341 ~v~ 343 (399)
.-.
T Consensus 176 ~~~ 178 (201)
T PF05401_consen 176 ERV 178 (201)
T ss_dssp EEE
T ss_pred eEE
Confidence 754
No 170
>PHA03412 putative methyltransferase; Provisional
Probab=29.25 E-value=33 Score=33.60 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=23.5
Q ss_pred eEEEeccCCChhHHHHHHhhhccCCCCccceeccccCC
Q psy15838 167 TSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNP 204 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP 204 (399)
++||+|+|.|.++-++.+.+.... .....++.++|
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~---~~~V~aVEID~ 86 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAK---PREIVCVELNH 86 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCC---CcEEEEEECCH
Confidence 999999999999988776543211 12355566554
No 171
>KOG1541|consensus
Probab=29.06 E-value=1.1e+02 Score=30.01 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=47.7
Q ss_pred CCcccEEEecCCCCCC--CCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHH-HHHhcCC-eeeee
Q psy15838 268 ASHCFLVTADGSFDCQ--GNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMY-LLACLFT-SVDLF 343 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~s--g~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~-lL~~~F~-~V~v~ 343 (399)
.+.||=|++=+++-+- .++...+..-.-+.+-. .-..+|++|+.+|+-.|--.+....-|+. .+..=|. -+.|=
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~--tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd 187 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFG--TLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVD 187 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhh--hhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeee
Confidence 3567777666665332 22222222211122222 23457899999999999876533333443 4666665 55666
Q ss_pred cCCCCCCCCceEEEEE
Q psy15838 344 KPATSKEGNSEIYVIC 359 (399)
Q Consensus 344 KP~aSR~~sSE~YlVc 359 (399)
=|.+.|.. -.|+|-
T Consensus 188 ~Pes~k~k--K~yLVL 201 (270)
T KOG1541|consen 188 WPESTKNK--KYYLVL 201 (270)
T ss_pred cccccccc--eeEEEE
Confidence 67665543 356654
No 172
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=28.90 E-value=62 Score=31.31 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.9
Q ss_pred ceEEEeccCCChhHHHHHHhh
Q psy15838 166 FTSIHLCEAPGAFITSLNHYL 186 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~yl 186 (399)
..++++|.|+|.++.+|.++.
T Consensus 32 ~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 32 DTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp SEEEEESSTTSCCHHHHHHHS
T ss_pred CEEEEeCCCCccchhhHhccc
Confidence 499999999999999988765
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=28.42 E-value=77 Score=30.58 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=16.0
Q ss_pred eEEEeccCCChhHHHHHH
Q psy15838 167 TSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~ 184 (399)
+++|+|+|+|..+..+..
T Consensus 32 ~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 32 PVLEIGPGKGALTDELAK 49 (258)
T ss_pred eEEEEeCccCHHHHHHHH
Confidence 899999999999987655
No 174
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=27.86 E-value=42 Score=33.17 Aligned_cols=51 Identities=22% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhccCCCCEEEEeEccCCCCCHHHHHHHHHhc--CCeeeeecCCCC
Q psy15838 295 KLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACL--FTSVDLFKPATS 348 (399)
Q Consensus 295 ~L~~~el~~Al~~Lr~GG~fVlK~F~~~e~~t~~Ll~lL~~~--F~~V~v~KP~aS 348 (399)
.++..-+.-|...|++||.+++-+=.... ..+..++... |..|.++|-..-
T Consensus 215 ~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 215 EVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred HHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHHhcCCceEEEEEecCCC
Confidence 34555556688899999999998875543 4444443333 567777766443
No 175
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=27.34 E-value=2.4e+02 Score=26.28 Aligned_cols=65 Identities=6% Similarity=-0.108 Sum_probs=35.5
Q ss_pred cccCCCChHHHHHHHHhhhhhhccCCCCCCCCCCCCcccEEEecCCCCCCCCCchhHHHH--HHHHHHHHHHHHhccCCC
Q psy15838 234 NTGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILV--GKLHYREVQIALSLLHNG 311 (399)
Q Consensus 234 ~tGDI~~~~~i~~i~~~v~~~~~~~~~~~~~~~~~~~vDLV~ADGs~d~sg~~~~qe~~s--~~L~~~el~~Al~~Lr~G 311 (399)
.++|+++.+.++.+.+.+ .+++|.|+.-.+.... ...+..+. ..-....+..++..++++
T Consensus 28 ~~~Dl~~~~~v~~~~~~~----------------~~~iD~li~nAG~~~~--~~~~~~~~vN~~~~~~l~~~~~~~~~~~ 89 (241)
T PRK12428 28 IQADLGDPASIDAAVAAL----------------PGRIDALFNIAGVPGT--APVELVARVNFLGLRHLTEALLPRMAPG 89 (241)
T ss_pred hcccCCCHHHHHHHHHHh----------------cCCCeEEEECCCCCCC--CCHHHhhhhchHHHHHHHHHHHHhccCC
Confidence 588999987776665522 2468999888775422 22222221 111122223344455667
Q ss_pred CEEEE
Q psy15838 312 GNLVI 316 (399)
Q Consensus 312 G~fVl 316 (399)
|.+|.
T Consensus 90 g~Iv~ 94 (241)
T PRK12428 90 GAIVN 94 (241)
T ss_pred cEEEE
Confidence 87765
No 176
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=27.32 E-value=51 Score=35.25 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.0
Q ss_pred CceEEEeccCCChhHHHHHHhhh
Q psy15838 165 SFTSIHLCEAPGAFITSLNHYLK 187 (399)
Q Consensus 165 ~~~vlDLceaPGgFsqaln~yl~ 187 (399)
..+++|.|||.|+|+.++.+++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~ 54 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNE 54 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHH
Confidence 46999999999999998877764
No 177
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=26.63 E-value=50 Score=31.89 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=15.8
Q ss_pred ceEEEeccCCChhHHHHHH
Q psy15838 166 FTSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 166 ~~vlDLceaPGgFsqaln~ 184 (399)
++++||++|-||++..+..
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ 19 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQ 19 (335)
T ss_dssp EEEEEET-TTTHHHHHHHH
T ss_pred CcEEEEccCccHHHHHHHh
Confidence 5899999999999998765
No 178
>KOG1924|consensus
Probab=26.20 E-value=1.1e+02 Score=34.88 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHhhhcCccchhHH------HhhhcccCchhhHHHHHHhhcchhhhHHHHHHHHH
Q psy15838 92 ENFQALKEKLNDVKSNLNHVHLKTW------HQHTNFVNRSSKVVQSVKRFIKPQLATQAWCKFHE 151 (399)
Q Consensus 92 ~~l~~lk~~Ln~~K~~l~~~~~~~w------~~ht~~~n~~~~i~~~vk~~~~~e~~trAw~KL~E 151 (399)
++|.+|...|+.+|..+||.+ +.+ -..|..-...-.|++++-=..+.-|.-+++|||+|
T Consensus 365 ~Dl~el~~rledir~emDd~~-~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIE 429 (1102)
T KOG1924|consen 365 DDLEELSGRLEDIRAEMDDAN-EVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIE 429 (1102)
T ss_pred hhHHHHHhHHHhhhhhhccHH-HHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 488999999999999999887 222 24456566777788876433445566689999886
No 179
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=26.06 E-value=51 Score=32.35 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=41.7
Q ss_pred HHHHHHHhccCCCCEEEEeEccCC--C-CCHHHHHH-HHHhcC-CeeeeecCCCCCCCCceEEEEEeeccCC-ccccccc
Q psy15838 299 REVQIALSLLHNGGNLVIKIFTIF--E-SDTICLMY-LLACLF-TSVDLFKPATSKEGNSEIYVICRDFHSV-CSQVWIY 372 (399)
Q Consensus 299 ~el~~Al~~Lr~GG~fVlK~F~~~--e-~~t~~Ll~-lL~~~F-~~V~v~KP~aSR~~sSE~YlVc~gf~g~-~~~~~~~ 372 (399)
+-+..|+..|++||.+++=+-.++ . .....+.. ++..+. +.|.-+-+..-.+.+-...|+....... ...+.+|
T Consensus 164 ~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~~~~~~v~f 243 (311)
T PF02384_consen 164 AFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKPEKKKKVLF 243 (311)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSSSSCSEEEE
T ss_pred hhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeecccccccccce
Confidence 356678899999997655444432 2 22356664 455444 3444443334444556666666555543 3345555
Q ss_pred cccccc
Q psy15838 373 LNLPPV 378 (399)
Q Consensus 373 ~~~~~~ 378 (399)
-+....
T Consensus 244 i~~~~~ 249 (311)
T PF02384_consen 244 IDASND 249 (311)
T ss_dssp EE-TTT
T ss_pred Eecccc
Confidence 554443
No 180
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=25.92 E-value=1.9e+02 Score=25.67 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=28.3
Q ss_pred CCcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEeEccCCC
Q psy15838 268 ASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323 (399)
Q Consensus 268 ~~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK~F~~~e 323 (399)
.+.+|+|++-.+... .++.+ ..+.-+.++|+|||.|++=-|....
T Consensus 42 ~~~fD~v~~~~~l~~--~~d~~---------~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 42 DCEFDAVTMGYGLRN--VVDRL---------RAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred CCCeeEEEecchhhc--CCCHH---------HHHHHHHHHcCcCeEEEEEECCCCC
Confidence 346999998554321 11221 2334466799999999987777544
No 181
>PHA03411 putative methyltransferase; Provisional
Probab=25.21 E-value=56 Score=32.65 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.3
Q ss_pred eEEEeccCCChhHHHHHH
Q psy15838 167 TSIHLCEAPGAFITSLNH 184 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~ 184 (399)
+|||||||.|.++..+.+
T Consensus 67 rVLDLGcGsGilsl~la~ 84 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLH 84 (279)
T ss_pred eEEEcCCCCCHHHHHHHH
Confidence 899999999999876544
No 182
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=23.22 E-value=1.1e+02 Score=28.87 Aligned_cols=31 Identities=6% Similarity=-0.145 Sum_probs=23.0
Q ss_pred eEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCC
Q psy15838 167 TSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPH 205 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~ 205 (399)
++||+|||.|--+.+ +..+ .|+.+|+++.|.
T Consensus 37 rvLd~GCG~G~da~~----LA~~----G~~V~gvD~S~~ 67 (213)
T TIGR03840 37 RVFVPLCGKSLDLAW----LAEQ----GHRVLGVELSEI 67 (213)
T ss_pred eEEEeCCCchhHHHH----HHhC----CCeEEEEeCCHH
Confidence 999999999998884 4333 366777777654
No 183
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=22.63 E-value=72 Score=32.41 Aligned_cols=35 Identities=6% Similarity=0.313 Sum_probs=24.6
Q ss_pred CceEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCC
Q psy15838 165 SFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPH 205 (399)
Q Consensus 165 ~~~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~ 205 (399)
..++||||+|.|+-...+.... -.|..+|++++|.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~------~~~~~~atDId~~ 149 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHE------YGWRFVGSDIDPQ 149 (321)
T ss_pred CceEEEecCCccHHHHHHHhhC------CCCEEEEEeCCHH
Confidence 4699999999998776554321 1477888877653
No 184
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=21.90 E-value=7.4e+02 Score=25.11 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=25.6
Q ss_pred eEEEeccCCChhHHHHHHhhhccCCCCccceeccccCCC
Q psy15838 167 TSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPH 205 (399)
Q Consensus 167 ~vlDLceaPGgFsqaln~yl~~~~~~~~w~~~a~sLnP~ 205 (399)
+||..|+|||.=+..|.......+..+ +|+-++=+|+
T Consensus 63 ~VVYiGSApG~HI~~L~~lf~~lg~~i--kw~LiDp~~h 99 (300)
T PHA03108 63 TIVYIGSAPGTHIRYLRDHFYSLGVVI--KWMLIDGRKH 99 (300)
T ss_pred eEEEecCCCCccHHHHHHHHHhcCCCe--EEEEECCCcc
Confidence 999999999999998876554433333 4665554444
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=21.40 E-value=1.3e+02 Score=29.29 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=24.3
Q ss_pred CcccEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHhccCCCCEEEEe
Q psy15838 269 SHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIK 317 (399)
Q Consensus 269 ~~vDLV~ADGs~d~sg~~~~qe~~s~~L~~~el~~Al~~Lr~GG~fVlK 317 (399)
+++|+|.-|+.-. + ...-+..++.+|++||.+|+=
T Consensus 155 ~~fD~iFiDadK~-----~---------Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKD-----N---------YINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHH-----H---------hHHHHHHHHHhcCCCeEEEEc
Confidence 5799999998732 1 112223457899999998863
Done!