RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15838
         (399 letters)



>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
           [TaxId: 562]}
          Length = 180

 Score = 71.4 bits (174), Expect = 3e-15
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 45/219 (20%)

Query: 144 QAWCKFHEIVHSYNIVPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLN 203
           +AW K  EI  S  +    +   T + L  APG +   +   +      +  D     ++
Sbjct: 5   RAWFKLDEIQQSDKLF---KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACD--LLPMD 59

Query: 204 PHYEGNSFDEMISDDRLILGTHRKWYFGPDNTGNILVQNFVSHFKQHIGFLLIHDTSLAP 263
           P    +       D+ ++     +                                    
Sbjct: 60  PIVGVDFLQGDFRDELVMKALLERVGDSKVQ----------------------------- 90

Query: 264 HCTHASHCFLVTADGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFE 323
                    +V +D + +  G P         L    +++   +L  GG+ V+K+F    
Sbjct: 91  ---------VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ--G 139

Query: 324 SDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVICRDF 362
                 +  +  LFT V + KP +S+  + E+Y++    
Sbjct: 140 EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGR 178


>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
           (nucleoside-2'-O-)-methyltransferase domain of RNA
           polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
          Length = 257

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 299 REVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFKPATSKEGNSEIYVI 358
           R + +  + L N     +K+   + S  I  M  L        +  P  S+    E+Y +
Sbjct: 156 RVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPL-SRNSTHEMYWV 214

Query: 359 CR 360
             
Sbjct: 215 SN 216


>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
           5693]}
          Length = 298

 Score = 29.1 bits (64), Expect = 0.80
 Identities = 20/219 (9%), Positives = 53/219 (24%), Gaps = 12/219 (5%)

Query: 99  EKLNDVKSNLNHVHLKTWHQHTNFVNRSSKVVQSVKRFIKPQLATQAWCKFHEIVHSYNI 158
             +N+++ N++  HLK +       +   +  + ++  +   LA  A+       +  + 
Sbjct: 55  GSVNNLELNVDASHLKLYDAGDITASTLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSA 114

Query: 159 VPQQENSFTSIHLCEAPGAFITSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDD 218
                    ++         + +++ +L +  P       + T        S        
Sbjct: 115 PN-----GRAMLRAFPGDVGVINVDSHLDVRPPLQDGRVHSGTPFRQLLEESSFSGKRFV 169

Query: 219 RLILGTHRKWYFGPDNTGNILVQNFVSHFKQHIGFLLIHDT--SLAPHCTHASHCFLVTA 276
                  +          +           +  G +   +    L    T  S       
Sbjct: 170 EFACQGSQCGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAFGLTGKNTFFSFDVDSLK 229

Query: 277 DGSFDCQGNPGEQEILVGKLHYREVQIALSLLHNGGNLV 315
                    P         L  +E      L      ++
Sbjct: 230 SSDMPGVSCPA-----AVGLSAQEAFDMCFLAGKTPTVM 263


>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase,
           AknH {Streptomyces galilaeus [TaxId: 33899]}
          Length = 140

 Score = 27.8 bits (61), Expect = 1.4
 Identities = 7/94 (7%), Positives = 22/94 (23%)

Query: 285 NPGEQEILVGKLHYREVQIALSLLHNGGNLVIKIFTIFESDTICLMYLLACLFTSVDLFK 344
              E   L G   +      +    +    + ++     +D +    +L        +  
Sbjct: 34  GTLEFTSLRGPELFAINVAWVKKTFSEEARLEEVGIEERADWVRARLVLYGRHVGEMVGM 93

Query: 345 PATSKEGNSEIYVICRDFHSVCSQVWIYLNLPPV 378
             T +  + E   +             + +    
Sbjct: 94  APTGRLFSGEQIHLLHFVDGKIHHHRDWPDYQGT 127


>d2ceva_ c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId: 33931]}
          Length = 298

 Score = 26.0 bits (56), Expect = 7.8
 Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 9/141 (6%)

Query: 180 TSLNHYLKLHHPRMQWDWIANTLNPHYEGNSFDEMISDDRLILGTHR-----KWYFGPDN 234
           T+        H       +        +   +   I  + ++L   R     +  F  + 
Sbjct: 128 TAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREK 187

Query: 235 TGNILVQNFVSHFKQHIGFLLIHDTSLAPHCTHASHCFLVTADGSFDCQGNPGEQEILVG 294
              I   + V                            L   D S      PG    ++G
Sbjct: 188 GIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSD----APGVGTPVIG 243

Query: 295 KLHYREVQIALSLLHNGGNLV 315
            L YRE  +A+ +L     + 
Sbjct: 244 GLTYRESHLAMEMLAEAQIIT 264


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 26.2 bits (58), Expect = 8.2
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 46  QLYNASSSYKLSDGETWFSQTKWQNT--QLAPTLFSHFNI-KTI 86
           QL  +        G    ++ KW NT  Q+A  L   F   KTI
Sbjct: 141 QLNTSVEINCTGAGHCNIARAKWNNTLKQIASKLREQFGNNKTI 184


>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium
           tumefaciens, Dps [TaxId: 358]}
          Length = 162

 Score = 25.8 bits (56), Expect = 8.4
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 84  KTIPSIKLENFQALKEKLNDVKSNLNHVHLKTWHQHTN 121
           KT   +       +   LN+  +++  + L T   H N
Sbjct: 5   KTKNDLPSNAKSTVIGILNESLASVIDLALVTKQAHWN 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,509,125
Number of extensions: 69434
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 19
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)