BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15839
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 39.7 bits (91), Expect = 0.023, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSI--PLIAHILNTWHTLKSCG 152
AEL+A++ L K VN IV DS AL I+++ T P++ I+ +
Sbjct: 1063 AELMAILLALQDSKE--TVN--IVTDSQYALGVISSQPTQSESPIVQQIIEEL----TKK 1114
Query: 153 KKVAFLWCPSHTGISGNEIVDR-ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSD 211
++V W P+H GI GNE +D+ ++ + F+ A + HEK+ +W
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKIDKLVSKDIRRVLFLEGIDQA-------QEDHEKYHSNWKA 1167
Query: 212 LTN 214
L +
Sbjct: 1168 LAS 1170
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 38.9 bits (89), Expect = 0.048, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 18/124 (14%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSI--PLIAHILNTWHTLKSCG 152
AEL+A++ L K + VN IV DS L I+++ T P++ I+ +
Sbjct: 1065 AELMAVLIALQDSKEQ--VN--IVTDSQYVLGIISSQPTQSDSPIVQQIIEEL----TKK 1116
Query: 153 KKVAFLWCPSHTGISGNEIVDR-ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSD 211
++V W P+H GI GNE +D+ ++ + F+ A + HEK+ +W
Sbjct: 1117 ERVYLTWVPAHKGIGGNEKIDKLVSKDIRRVLFLEGIDQA-------QEDHEKYHSNWRA 1169
Query: 212 LTNN 215
L ++
Sbjct: 1170 LASD 1173
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 38.1 bits (87), Expect = 0.086, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 152
AEL A+ L +RP+VN IV DS AL I + + L+ I+ +K
Sbjct: 1064 AELHAIQLALQD--SRPEVN--IVTDSQYALGIIQAQPDRSGSELVNQIIE--QLIKK-- 1115
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 212
+KV W P+H GI GNE VD+ G V D + H W+ SD
Sbjct: 1116 EKVYLSWVPAHKGIGGNEQVDKLVSS--GIRKVLFLDGIDKAQEEHERYHSNWRAMASDF 1173
Query: 213 TNNKLKCVKPTIGPWNVSDCN 233
+ P + V+ C+
Sbjct: 1174 N------LPPVVAKEIVASCD 1188
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 37.0 bits (84), Expect = 0.18, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 20/124 (16%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDS---MSALTSIANKNTSIPLIAHILNTWHTLKSC 151
A+L A+ L+ + P+VN IV DS M LT+ ++ S PL+ I+ L
Sbjct: 1093 AKLTAIKMALED--SGPNVN--IVTDSQYAMGILTAQPTQSDS-PLVEQII----ALMIQ 1143
Query: 152 GKKVAFLWCPSHTGISGNEIVDR-ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWS 210
+++ W P+H GI GNE +D+ ++ + F+ A + HE++ +W
Sbjct: 1144 KQQIYLQWVPAHKGIGGNEEIDKLVSKGIRRVLFLEKIEEA-------QEKHERYHNNWK 1196
Query: 211 DLTN 214
+L +
Sbjct: 1197 NLAD 1200
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 37.0 bits (84), Expect = 0.19, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 20/124 (16%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDS---MSALTSIANKNTSIPLIAHILNTWHTLKSC 151
AEL+A+ L+ + P+VN IV DS M LT+ ++ S PLI I+ L
Sbjct: 1091 AELMAIKMALED--SGPNVN--IVTDSQYAMGILTAQPTQSDS-PLIEQII----ALMVQ 1141
Query: 152 GKKVAFLWCPSHTGISGNEIVDRATRQ-LDGAEFVNLSSPADLISVGKKYIHEKWQKSWS 210
++ W P+ GI GNE +D+ Q + F+ A + HE++ +W
Sbjct: 1142 KHQIYLQWVPADKGIGGNEEIDKLVSQGMRKILFLEKIEEA-------QEEHERYHNNWR 1194
Query: 211 DLTN 214
+L +
Sbjct: 1195 NLAD 1198
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 22/132 (16%)
Query: 56 PVVDLSLY---GSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPD 112
P +++Y G + + + V + G K L + AE +A+ L+ +++
Sbjct: 616 PTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTH-QVAERMAIQMALEDTRDK-Q 673
Query: 113 VNTLIVCDSMSALTSIAN-------KNTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTG 165
VN IV DS +I +N P+I +I + V F W P H G
Sbjct: 674 VN--IVTDSYYCWKNITEGLGLEGPQNPWWPIIQNIREK--------EIVYFAWVPGHKG 723
Query: 166 ISGNEIVDRATR 177
I GN++ D A +
Sbjct: 724 IYGNQLADEAAK 735
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 56 PVVDLSLY---GSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPD 112
P +++Y G + + + V + G K L + AE +A+ L+ +++
Sbjct: 617 PTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTH-QVAERMAIQMALEDTRDK-Q 674
Query: 113 VNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKK--VAFLWCPSHTGISGNE 170
VN IV DS +I + L W +++ +K V F W P H GI GN+
Sbjct: 675 VN--IVTDSYYCWKNITE---GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQ 729
Query: 171 IVDRATR 177
+ D A +
Sbjct: 730 LADEAAK 736
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 56 PVVDLSLY---GSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPD 112
P +++Y G + + + V + G K L + AE +A+ L+ +++
Sbjct: 617 PTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTH-QVAERMAIQMALEDTRDK-Q 674
Query: 113 VNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKK--VAFLWCPSHTGISGNE 170
VN IV DS +I + L W +++ +K V F W P H GI GN+
Sbjct: 675 VN--IVTDSYYCWKNITE---GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQ 729
Query: 171 IVDRATR 177
+ D A +
Sbjct: 730 LADEAAK 736
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 35.4 bits (80), Expect = 0.48, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 14/84 (16%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDS---MSALTSIANKNTSIPLIAHILNTWHTLKSC 151
AEL A+ L+ + P VN IV DS M LT+ ++ S PL+ I+ +
Sbjct: 1090 AELTAIKMALED--SGPKVN--IVTDSQYAMGILTAQPTQSDS-PLVEQII-----AQMV 1139
Query: 152 GKKVAFL-WCPSHTGISGNEIVDR 174
K+ +L W P+H GI GNE +D+
Sbjct: 1140 QKEAIYLQWVPAHKGIGGNEEIDK 1163
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 35.0 bits (79), Expect = 0.63, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 18/141 (12%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 152
AEL A+ L +R +VN IV DS AL I + + L+ I+ +K
Sbjct: 1062 AELQAIQLALQD--SRSEVN--IVTDSQYALGIIQAQPDRSEAELVNQIIE--QLIKK-- 1113
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 212
+KV W P+H GI GNE VD+ G V D + H W+ SD
Sbjct: 1114 EKVYLSWVPAHKGIGGNEQVDKLVSS--GIRKVLFLDGIDKAQEEHERYHNNWRAMASDF 1171
Query: 213 TNNKLKCVKPTIGPWNVSDCN 233
+ P + V+ C+
Sbjct: 1172 N------LPPIVAKEIVASCD 1186
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 35.0 bits (79), Expect = 0.66, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 152
AEL A F L + P VN I+ DS + IA + T P++A I+ +
Sbjct: 1086 AELEA--FALALTDSEPQVN--IIVDSQYVMGIIAAQPTETESPIVAKIIE-----EMIK 1136
Query: 153 KKVAFL-WCPSHTGISGNEIVDRATRQ 178
K+ ++ W P+H G+ GN+ VD Q
Sbjct: 1137 KEAVYVGWVPAHKGLGGNQEVDHLVSQ 1163
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 34.7 bits (78), Expect = 0.80, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 18/140 (12%)
Query: 96 ELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGK 153
EL A+ L ++ P+VN IV DS AL I + + L+ I+ +K +
Sbjct: 1066 ELQAIYLALQ--ESGPEVN--IVTDSQYALGIIQAQPDKSESELVNQIIE--ELIKK--E 1117
Query: 154 KVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLT 213
K W P+H GI GNE VD+ G V D V + H W+ SD
Sbjct: 1118 KFYLSWVPAHKGIGGNEQVDKLVSS--GIRKVLFLDGIDKAQVQHEKYHSNWRAMASDFN 1175
Query: 214 NNKLKCVKPTIGPWNVSDCN 233
+ P + V+ C+
Sbjct: 1176 ------LPPIVAKEIVASCD 1189
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 34.7 bits (78), Expect = 0.82, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1083 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1138
Query: 175 ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNNKLKCVKPTIGPWNVSDCN 233
Q G V D + H W+ SD + P + V+ C+
Sbjct: 1139 LVSQ--GIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFN------LPPVVAKEIVASCD 1189
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 34.7 bits (78), Expect = 0.82, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1079 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1134
Query: 175 ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNNKLKCVKPTIGPWNVSDCN 233
Q G V D + H W+ SD + P + V+ C+
Sbjct: 1135 LVSQ--GIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFN------LPPVVAKEIVASCD 1185
>sp|Q49622|NADA_MYCLE Quinolinate synthase A OS=Mycobacterium leprae (strain TN) GN=nadA
PE=3 SV=2
Length = 352
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 146 HTLKSCGKKVAFLW---CPSHTGISGNEIVDRATRQLDGAEFVN 186
H + G+K ++W C H GI+G+E+VD+A D FV+
Sbjct: 187 HVRRVTGRKNVYVWMGECHVHAGINGDELVDQARANPDAELFVH 230
>sp|B8ZR90|NADA_MYCLB Quinolinate synthase A OS=Mycobacterium leprae (strain Br4923)
GN=nadA PE=3 SV=1
Length = 352
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 146 HTLKSCGKKVAFLW---CPSHTGISGNEIVDRATRQLDGAEFVN 186
H + G+K ++W C H GI+G+E+VD+A D FV+
Sbjct: 187 HVRRVTGRKNVYVWMGECHVHAGINGDELVDQARANPDAELFVH 230
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.3 bits (77), Expect = 1.0, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 212
+KV W P+H GI GNE VD+ Q G V D + H W+ SD
Sbjct: 1116 EKVYLAWVPAHKGIGGNEQVDKLVSQ--GIRKVLFLDGIDKAQEEHEKYHNNWRAMASDF 1173
Query: 213 TNNKLKCVKPTIGPWNVSDCN 233
+ P + V+ C+
Sbjct: 1174 N------LPPVVAKEIVASCD 1188
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 117 IVCDSMSALTSIANKNTSI--PLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS + +A++ T P++ I+ L +K+ W P+H GI GNE +D+
Sbjct: 1091 IVTDSQYVVGILASRPTETDHPIVKEIIE----LMKGKEKIYLSWLPAHKGIGGNEQIDK 1146
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 33.9 bits (76), Expect = 1.4, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 47 GFPPWYSDFPVVDLSLYGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDS 106
G WY D GS+ + A Y + K I+ S AE+ AL+ L +
Sbjct: 593 GAETWYID---------GSRKQGKAARAAYWTNTGKWQIMEIEGSNQKAEVQALLLALKA 643
Query: 107 VKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWH-TLKSCGKKVAFL--WCPSH 163
++N I+ DS L +I N+ + + W L+ KK+A W P H
Sbjct: 644 --GSEEMN--IITDSQYIL-NILNQQPDL-----MEGLWQEVLEQMEKKIAIFIDWVPGH 693
Query: 164 TGISGNEIVDR 174
GI GNE VD+
Sbjct: 694 KGIPGNEEVDK 704
>sp|Q6P882|ZB8AL_XENTR Zinc finger and BTB domain-containing protein 8A.2 OS=Xenopus
tropicalis GN=zbtb8a.2 PE=2 SV=1
Length = 455
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 102 FCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKKVAFLWCP 161
FC +VK + D+ ++C + + H+ + + T+ GK + WC
Sbjct: 303 FCTHTVKRKADLKRHLLCHTGERPYPCQACGKRFTRLEHVRSHYRTIHEAGKPIC-RWCK 361
Query: 162 SHTGISGNEIVDRATRQL 179
H ++V TR+
Sbjct: 362 RHVTEDSGQVVQEGTRRF 379
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 152
AEL A++ L ++ DVN IV DS A+ I ++ + L++ I+ +K
Sbjct: 1074 AELQAILMALQ--ESGRDVN--IVTDSQYAMGIIHSQPDKSESELVSQIIE--ELIKK-- 1125
Query: 153 KKVAFLWCPSHTGISGNEIVDR 174
++V W P+H GI GNE VD+
Sbjct: 1126 ERVYLSWVPAHKGIGGNEQVDK 1147
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1082 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1137
Query: 175 ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNNKLKCVKPTIGPWNVSDCN 233
G V D + H W+ SD + P + V+ CN
Sbjct: 1138 LVSA--GIRKVLFLDGIDKAQEEHEKYHTNWRAMASDFN------LPPVVAKEIVASCN 1188
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VDR
Sbjct: 1083 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDR 1138
>sp|Q3KKS6|MIAA_CHLTA tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=miaA PE=3 SV=1
Length = 339
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 164 TGISGNEIVDRATRQLDGAEFVNLSSPADLISVGK-KYIHEKW-----QKSW 209
GI GN RA + EF++L SP DL + K K+I W Q++W
Sbjct: 256 AGIKGNSSASRAIGYREWIEFLDLGSPPDLFEITKQKFITNTWRYTKKQRTW 307
>sp|O84771|MIAA_CHLTR tRNA dimethylallyltransferase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=miaA PE=3 SV=2
Length = 314
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 164 TGISGNEIVDRATRQLDGAEFVNLSSPADLISVGK-KYIHEKW-----QKSW 209
GI GN RA + EF++L SP DL + K K+I W Q++W
Sbjct: 231 AGIKGNSSASRAIGYREWIEFLDLGSPPDLFEITKQKFITNTWRYTKKQRTW 282
>sp|B0BAM1|MIAA_CHLTB tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=miaA PE=3 SV=1
Length = 339
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 164 TGISGNEIVDRATRQLDGAEFVNLSSPADLISVGK-KYIHEKW-----QKSW 209
GI GN RA + EF++L SP DL + K K+I W Q++W
Sbjct: 256 AGIKGNSSASRAIGYREWIEFLDLGSPPDLFEITKQKFITNTWRYTKKQRTW 307
>sp|B0B8Z2|MIAA_CHLT2 tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=miaA PE=3 SV=1
Length = 339
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 164 TGISGNEIVDRATRQLDGAEFVNLSSPADLISVGK-KYIHEKW-----QKSW 209
GI GN RA + EF++L SP DL + K K+I W Q++W
Sbjct: 256 AGIKGNSSASRAIGYREWIEFLDLGSPPDLFEITKQKFITNTWRYTKKQRTW 307
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 95 AELLALVFCL-DSVKNRPDVNTLIVCDS---MSALTSIANKNTSIPLIAHILNTWHTLKS 150
AEL A+ L DS +N VN IV DS M+ LT+ ++ S PL+ I+ +K
Sbjct: 1086 AELTAVKMALEDSGEN---VN--IVTDSQYVMNILTACPQESNS-PLVEQIIQA--LMKK 1137
Query: 151 CGKKVAFLWCPSHTGISGNEIVDR 174
++V W P+H GI GN +D+
Sbjct: 1138 --RQVYLQWVPAHKGIGGNTEIDK 1159
>sp|Q3UZB0|ARMX5_MOUSE Armadillo repeat-containing X-linked protein 5 OS=Mus musculus
GN=Armcx5 PE=2 SV=1
Length = 606
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 85 ILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNT 144
+LN + ++L ++ CL KN+ + LI + MS+L ++ +KN S I HI+
Sbjct: 488 LLNKGSVKIKFQILRVLLCLS--KNQANTRELISAEVMSSLVALFHKNESKANILHIIEI 545
Query: 145 WHTLKSCGKKVAFLW 159
+ + KK A L+
Sbjct: 546 FENINFQFKKRAKLF 560
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1084 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1139
Query: 175 -ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNN 215
+ + F+N A + HEK+ +W + ++
Sbjct: 1140 LVSAGIRKVLFLNGIDKA-------QEEHEKYHSNWRAMASD 1174
>sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate EHO) GN=gag-pol PE=3 SV=3
Length = 1464
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKK 154
AEL A L + P VN ++ + + + T P++ I+ +K +K
Sbjct: 1085 AELEAFALALQD--SGPQVNIIVDSQYVMGIVAAQPTETESPIVREIIE--EMIKK--EK 1138
Query: 155 VAFLWCPSHTGISGNEIVDRATRQ 178
+ W P+H G+ GN+ VD Q
Sbjct: 1139 IYVGWVPAHKGLGGNQEVDHLVSQ 1162
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 32.7 bits (73), Expect = 3.1, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 22/135 (16%)
Query: 43 PYSQGFPPWYSDFPVVDLSLYGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVF 102
P G WY D G + + + A Y + K ++ S AE+ AL+
Sbjct: 590 PPISGAETWYID---------GGRKLGKAAKAAYWTDTGKWQVMELEGSNQKAEIQALLL 640
Query: 103 CLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWH-TLKSCGKKVAFL--W 159
L K P+ I+ DS + ++ + + I W L+ KK A W
Sbjct: 641 AL---KAGPE-EMNIITDSQYMINILSQQPDKMEGI------WQEVLEELEKKTAIFIDW 690
Query: 160 CPSHTGISGNEIVDR 174
P H GI GNE VD+
Sbjct: 691 VPGHKGIPGNEEVDK 705
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 32.7 bits (73), Expect = 3.4, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE
Sbjct: 1082 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNE---- 1133
Query: 175 ATRQLDGAEFVNLSSPADLISVGK-KYIHEKWQKSWSDLTNN 215
Q+DG + L + K + HEK+ +W + ++
Sbjct: 1134 ---QVDGLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASD 1172
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 22/131 (16%)
Query: 47 GFPPWYSDFPVVDLSLYGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDS 106
G WY D G + + + A Y + K +++ S AE+ AL+ L +
Sbjct: 594 GAETWYID---------GGRKLGKAAKAAYWTDTGKWRVMDLEGSNQKAEIQALLLALKA 644
Query: 107 VKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWH-TLKSCGKKVAFL--WCPSH 163
++N I+ DS + I + + I W L+ KK A W P H
Sbjct: 645 --GSEEMN--IITDSQYVINIILQQPDMMEGI------WQEVLEELEKKTAIFIDWVPGH 694
Query: 164 TGISGNEIVDR 174
GI GNE VD+
Sbjct: 695 KGIPGNEEVDK 705
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 32.3 bits (72), Expect = 3.8, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 212
+KV W P+H GI GNE VD+ G V D + H W+ SD
Sbjct: 1109 EKVYLSWVPAHKGIGGNEQVDKLVSS--GIRKVLFLDGIDKAQEDHEKYHCNWRAMASDF 1166
Query: 213 TNNKLKCVKPTIGPWNVSDCN 233
+ P + V+ CN
Sbjct: 1167 N------LPPVVAKEIVASCN 1181
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 32.3 bits (72), Expect = 4.1, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 212
+KV W P+H GI GNE VD+ G V D + H W+ SD
Sbjct: 1111 EKVYLSWVPAHKGIGGNEQVDKLVSS--GIRKVLFLDGIDKAQEEHEKYHNNWRAMASDF 1168
Query: 213 TNNKLKCVKPTIGPWNVSDCN 233
+ P + V++C+
Sbjct: 1169 N------LPPVVAKEIVANCD 1183
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 32.3 bits (72), Expect = 4.1, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1086 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1141
Query: 175 ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNNKLKCVKPTIGPWNVSDCN 233
G V D + H W+ SD + P + V+ C+
Sbjct: 1142 LVSA--GIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFN------LPPIVAKEIVASCD 1192
>sp|Q11LC8|FMT_MESSB Methionyl-tRNA formyltransferase OS=Mesorhizobium sp. (strain BNC1)
GN=fmt PE=3 SV=1
Length = 311
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 166 ISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWS---DLTNNKLKCVKP 222
++G ++ A L+ E PA ++ KK I E+ + WS + +N ++ + P
Sbjct: 173 LAGAGLMVAAIAALEQGELALTPQPATGVTYAKKIIKEETRVDWSRPAEEVHNHIRGLSP 232
Query: 223 TIGPWNVSDCNNRYEEVVLTR 243
G W ++ E V L R
Sbjct: 233 LPGAWCEMPAGDKAERVKLLR 253
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 32.3 bits (72), Expect = 4.4, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1088 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1143
Query: 175 ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNNKLKCVKPTIGPWNVSDCN 233
G V D + H W+ SD + P + V+ C+
Sbjct: 1144 LVSA--GIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFN------LPPIVAKEIVASCD 1194
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 32.3 bits (72), Expect = 4.4, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1081 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1136
Query: 175 ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNNKLKCVKPTIGPWNVSDCN 233
G V D + H W+ SD + P + V+ C+
Sbjct: 1137 LVSA--GIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFN------LPPVVAKEIVASCD 1187
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 32.3 bits (72), Expect = 4.6, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 212
+KV W P+H GI GNE VD+ G V D + H W+ SD
Sbjct: 1113 EKVYLSWVPAHKGIGGNEQVDKLVSS--GIRKVLFLDGIDKAQEDHEKYHSNWRAMASDF 1170
Query: 213 TNNKLKCVKPTIGPWNVSDCN 233
+ P + V+ C+
Sbjct: 1171 N------LPPVVAKEIVASCD 1185
>sp|Q76634|POL_HV2UC Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate UC1) GN=gag-pol PE=3 SV=3
Length = 1471
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 152
AEL A L + P VN I+ DS + +A + T PL+ I+ +
Sbjct: 1087 AELEAFALALQD--SGPQVN--IIVDSQYVMGIVAGQPTETESPLVNQIIE-----EMIK 1137
Query: 153 KKVAFL-WCPSHTGISGNEIVDRATRQ 178
K+ ++ W P+H G+ GN+ VD Q
Sbjct: 1138 KEAIYVGWVPAHRGLGGNQEVDHLVSQ 1164
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 117 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 174
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1082 IVTDSQYALGIIQAQPDRSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1137
Query: 175 ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNNKLKCVKPTIGPWNVSDCN 233
G V D + H W+ SD + P + V+ C+
Sbjct: 1138 LVSA--GIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFN------LPPVVAKEIVASCD 1188
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 32.0 bits (71), Expect = 4.9, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 95 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKK 154
AEL A+ L +V IV DS AL I + + + I+N +K
Sbjct: 1063 AELQAIQLALQD----SEVEVNIVTDSQYALGIIQGQPDTSE--SEIVNQIIEELIKKEK 1116
Query: 155 VAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTN 214
V W P+H GI GNE +D+ G V D + H W+ SD
Sbjct: 1117 VYLSWVPAHKGIGGNEQIDKLVSS--GIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFN- 1173
Query: 215 NKLKCVKPTIGPWNVSDCN 233
+ P + V++C+
Sbjct: 1174 -----LPPIVAKEIVANCD 1187
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 32.0 bits (71), Expect = 4.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 30/75 (40%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYI----------- 201
+KV W P+H GI GNE VD+ L+S G + I
Sbjct: 1116 EKVYLAWVPAHKGIGGNEQVDK------------------LVSAGIRKILFLDGIDKAQD 1157
Query: 202 -HEKWQKSWSDLTNN 215
HEK+ +W + ++
Sbjct: 1158 EHEKYHSNWRAMASD 1172
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 32.0 bits (71), Expect = 4.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 30/75 (40%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYI----------- 201
+KV W P+H GI GNE VD+ L+S G + I
Sbjct: 1128 EKVYLAWVPAHKGIGGNEQVDK------------------LVSAGIRKILFLDGIDKAQE 1169
Query: 202 -HEKWQKSWSDLTNN 215
HEK+ +W + ++
Sbjct: 1170 EHEKYHSNWRAMASD 1184
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 32.0 bits (71), Expect = 5.3, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 30/75 (40%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYI----------- 201
+KV W P+H GI GNE VD+ L+S G + I
Sbjct: 1128 EKVYLAWVPAHKGIGGNEQVDK------------------LVSAGIRKILFLDGIDKAQD 1169
Query: 202 -HEKWQKSWSDLTNN 215
HEK+ +W + ++
Sbjct: 1170 EHEKYHSNWRAMASD 1184
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 32.0 bits (71), Expect = 5.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 212
+KV W P+H GI GNE VD+ G V D + H W+ SD
Sbjct: 1116 EKVYLSWVPAHKGIGGNEQVDKLVSS--GVRKVLFLDGIDKAQEEHERYHNNWRAVASDF 1173
Query: 213 TNNKLKCVKPTIGPWNVSDCN 233
+ P + V+ C+
Sbjct: 1174 N------LPPIVAKEIVASCD 1188
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 32.0 bits (71), Expect = 5.7, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 153 KKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 212
+KV W P+H GI GNE VD+ G V D + H W+ SD
Sbjct: 1113 EKVYLSWVPAHKGIGGNEQVDKLVSS--GIRKVLFLDGIDKAQEEHEKYHSNWRAMASDF 1170
Query: 213 TNNKLKCVKPTIGPWNVSDCN 233
+ P + V+ C+
Sbjct: 1171 N------LPPVVAKEIVASCD 1185
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 32.0 bits (71), Expect = 6.1, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 153 KKVAFLWCPSHTGISGNEIVDR 174
+KV W P+H GI GNE VD+
Sbjct: 1128 EKVYLAWVPAHKGIGGNEQVDK 1149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,904,926
Number of Sequences: 539616
Number of extensions: 4116813
Number of successful extensions: 9830
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 9825
Number of HSP's gapped (non-prelim): 61
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)