Query psy15839
Match_columns 293
No_of_seqs 260 out of 1526
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:40:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.9 3.2E-24 1.1E-28 176.9 14.5 121 57-182 12-147 (150)
2 2qkb_A Ribonuclease H1, HS-RNA 99.9 3.1E-24 1.1E-28 177.6 14.2 126 57-183 7-152 (154)
3 2kq2_A Ribonuclease H-related 99.9 9.5E-25 3.3E-29 179.5 6.2 125 56-184 5-139 (147)
4 3h08_A RNH (ribonuclease H); R 99.9 1.2E-23 4.2E-28 172.4 12.4 122 57-181 4-143 (146)
5 1jl1_A Ribonuclease HI; RNAse 99.9 2.7E-23 9.3E-28 172.2 12.5 125 57-185 4-146 (155)
6 2e4l_A Ribonuclease HI, RNAse 99.9 4.1E-23 1.4E-27 171.7 13.0 123 56-182 5-145 (158)
7 3p1g_A Xenotropic murine leuke 99.9 3E-23 1E-27 173.6 11.9 125 57-185 23-159 (165)
8 1ril_A Ribonuclease H; hydrola 99.9 4E-23 1.4E-27 173.1 8.7 125 57-184 8-150 (166)
9 2lsn_A Reverse transcriptase; 99.9 9.4E-22 3.2E-26 164.4 12.7 123 57-180 7-161 (165)
10 3u3g_D Ribonuclease H, RNAse H 99.8 8.2E-21 2.8E-25 153.3 11.8 121 57-181 3-136 (140)
11 3hst_B Protein RV2228C/MT2287; 99.8 7.8E-21 2.7E-25 154.0 11.2 121 57-181 3-132 (141)
12 2ehg_A Ribonuclease HI; RNAse 99.8 9.6E-20 3.3E-24 149.5 11.4 119 58-181 2-133 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 2.6E-19 9E-24 176.2 15.6 115 57-180 436-555 (555)
14 2zd1_A Reverse transcriptase/r 99.8 1.9E-19 6.4E-24 177.3 11.4 114 57-179 439-557 (557)
15 1zbf_A Ribonuclease H-related 99.4 4.1E-14 1.4E-18 115.1 2.5 114 57-173 11-138 (142)
16 4htu_A Ribonuclease H, RNAse H 99.2 1E-11 3.5E-16 99.4 6.5 74 57-131 5-83 (134)
17 1rw3_A POL polyprotein; RNA an 81.1 0.44 1.5E-05 44.9 1.1 42 89-131 386-428 (455)
18 2fr5_A Cytidine deaminase; tet 58.7 23 0.00078 27.9 6.2 54 68-122 35-92 (146)
19 2nx8_A TRNA-specific adenosine 56.9 16 0.00055 29.8 5.2 52 68-119 35-90 (179)
20 1wkq_A Guanine deaminase; doma 52.4 21 0.00071 28.7 5.1 52 68-119 31-86 (164)
21 2a8n_A Cytidine and deoxycytid 51.8 19 0.00067 28.0 4.8 52 68-119 23-78 (144)
22 2b3j_A TRNA adenosine deaminas 51.1 32 0.0011 27.3 6.0 52 68-119 26-81 (159)
23 1wwr_A TRNA adenosine deaminas 51.0 23 0.00079 28.6 5.2 52 68-119 42-97 (171)
24 2zd1_B P51 RT; P51/P66, hetero 47.9 21 0.00071 33.1 5.1 67 57-124 324-399 (428)
25 1uwz_A Cytidine deaminase; CDD 45.2 58 0.002 25.1 6.5 52 70-122 25-80 (136)
26 3mpz_A Cytidine deaminase; ssg 43.7 61 0.0021 25.6 6.5 51 70-121 47-101 (150)
27 1z3a_A TRNA-specific adenosine 43.6 30 0.001 27.8 4.8 51 69-119 29-83 (168)
28 4aie_A Glucan 1,6-alpha-glucos 42.2 8.1 0.00028 36.5 1.3 98 48-170 3-111 (549)
29 2lnd_A De novo designed protei 40.7 91 0.0031 22.0 6.2 61 138-199 37-97 (112)
30 2d30_A Cytidine deaminase; pur 38.6 76 0.0026 24.7 6.3 52 70-122 34-89 (141)
31 1r5t_A Cytidine deaminase; zin 37.2 93 0.0032 24.1 6.6 55 68-122 31-89 (142)
32 1ea9_C Cyclomaltodextrinase; h 35.8 28 0.00096 33.5 4.0 74 96-175 170-255 (583)
33 3dh1_A TRNA-specific adenosine 35.1 54 0.0018 26.9 5.1 41 68-108 45-89 (189)
34 2l7x_A Envelope glycoprotein; 34.1 11 0.00039 25.8 0.6 30 263-292 31-66 (77)
35 2akl_A PHNA-like protein PA012 33.5 17 0.00057 28.2 1.5 21 260-280 25-49 (138)
36 2z3g_A Blasticidin-S deaminase 32.9 73 0.0025 24.3 5.3 52 69-121 27-80 (130)
37 2zic_A Dextran glucosidase; TI 32.2 13 0.00045 35.5 1.0 95 49-168 3-108 (543)
38 3dmo_A Cytidine deaminase; str 31.3 79 0.0027 24.5 5.2 53 69-121 32-89 (138)
39 1a6b_B Momulv, zinc finger pro 25.4 48 0.0016 20.0 2.3 24 259-282 7-30 (40)
40 1ht6_A AMY1, alpha-amylase iso 25.0 38 0.0013 30.8 2.7 66 97-167 20-97 (405)
41 3r2n_A Cytidine deaminase; str 24.9 1.4E+02 0.0049 23.0 5.7 51 70-121 32-86 (138)
42 2hxv_A Diaminohydroxyphosphori 23.9 1.5E+02 0.005 26.7 6.4 38 68-105 35-72 (360)
43 1u6p_A GAG polyprotein; MLV, A 22.4 50 0.0017 21.5 2.2 24 260-283 21-44 (56)
44 1wzl_A Alpha-amylase II; pullu 22.4 1E+02 0.0036 29.4 5.4 75 96-176 171-257 (585)
45 1j0h_A Neopullulanase; beta-al 22.2 1.1E+02 0.0037 29.4 5.4 75 95-175 173-259 (588)
46 1zja_A Trehalulose synthase; s 22.1 41 0.0014 32.1 2.4 95 48-167 3-108 (557)
47 4aef_A Neopullulanase (alpha-a 21.9 1.1E+02 0.0037 29.7 5.5 70 96-171 237-318 (645)
48 1lwj_A 4-alpha-glucanotransfer 21.9 68 0.0023 29.4 3.8 68 97-169 22-100 (441)
49 2wc7_A Alpha amylase, catalyti 21.2 43 0.0015 31.2 2.3 69 96-169 54-133 (488)
50 1gh9_A 8.3 kDa protein (gene M 21.0 24 0.00081 24.3 0.3 30 261-291 20-54 (71)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.92 E-value=3.2e-24 Score=176.86 Aligned_cols=121 Identities=24% Similarity=0.254 Sum_probs=89.9
Q ss_pred eEEEEEecCCC-CCC-eeEEEEEC-CeeEEeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhcCC-
Q psy15839 57 VVDLSLYGSKT-IQN-TSCAVYAG-GSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKN- 132 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~~v~~~-~~~~~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~~- 132 (293)
.+.||||||+. +++ .|+|++.. +....+++ ..+|++.||+.|++.||+.+ ..+|.|+|||++++++|+++.
T Consensus 12 ~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~w~~ 86 (150)
T 3qio_A 12 AETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQWIH 86 (150)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHHHHH
Confidence 68899999997 544 56676543 33333444 46789999999999999986 378999999999999999861
Q ss_pred -------C--Ch-h-HHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccCC
Q psy15839 133 -------T--SI-P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 182 (293)
Q Consensus 133 -------~--~~-~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~ 182 (293)
. .+ + ...++++.+..+..++..|.|.|||||+|++|||.||+||++|+..
T Consensus 87 ~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 87 NWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 1 12 2 2234444433333467899999999999999999999999999754
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.91 E-value=3.1e-24 Score=177.58 Aligned_cols=126 Identities=20% Similarity=0.210 Sum_probs=96.9
Q ss_pred eEEEEEecCCC-CCC----eeEEEEECC---eeEEeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHh
Q psy15839 57 VVDLSLYGSKT-IQN----TSCAVYAGG---SAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSI 128 (293)
Q Consensus 57 ~~~iytDGS~~-~~~----~G~~v~~~~---~~~~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l 128 (293)
.+.||||||+. +++ .|+|++..+ ......+...++++.||+.|++.||+.+.+.+..+|.|+|||+++++.|
T Consensus 7 ~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i 86 (154)
T 2qkb_A 7 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGI 86 (154)
T ss_dssp EEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHH
T ss_pred eEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhh
Confidence 67899999997 443 688877533 1234455557899999999999999999887778999999999999999
Q ss_pred hcC--------CC--Ch-h-HHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccCCc
Q psy15839 129 ANK--------NT--SI-P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAE 183 (293)
Q Consensus 129 ~~~--------~~--~~-~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~ 183 (293)
.++ +. .+ + ....+++.+..+.. +..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 87 ~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 87 TNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 974 21 12 2 22344444444443 45799999999999999999999999998653
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.90 E-value=9.5e-25 Score=179.47 Aligned_cols=125 Identities=13% Similarity=0.050 Sum_probs=94.4
Q ss_pred CeEEEEEecCCCCCCeeEEEE--ECCeeE--Ee-ec--CC--CCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHH
Q psy15839 56 PVVDLSLYGSKTIQNTSCAVY--AGGSAK--SY-IL--NN--INSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALT 126 (293)
Q Consensus 56 ~~~~iytDGS~~~~~~G~~v~--~~~~~~--~~-~~--~~--~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~ 126 (293)
..+.||||||+..+..|+|++ ..+... .. +. +. .++|+.||+.|++.||+.+.+.+. +|.|+|||+.+.+
T Consensus 5 ~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~ 83 (147)
T 2kq2_A 5 TEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAF 83 (147)
T ss_dssp SCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHH
T ss_pred CeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHH
Confidence 357899999999866888865 344322 22 22 22 368999999999999999877666 9999999999888
Q ss_pred HhhcCCC-ChhHHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccCCcc
Q psy15839 127 SIANKNT-SIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEF 184 (293)
Q Consensus 127 ~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~~ 184 (293)
.+.+.++ +.+....+.+++..+.. .|.|.|||||+|++|||.||+|||+|+..+.
T Consensus 84 w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 84 WATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp HTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 8887765 44433344444444432 8999999999999999999999999986543
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.90 E-value=1.2e-23 Score=172.37 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=87.4
Q ss_pred eEEEEEecCCC-CCC-eeEEEE--ECCeeEEe-ecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhc-
Q psy15839 57 VVDLSLYGSKT-IQN-TSCAVY--AGGSAKSY-ILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN- 130 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~~v~--~~~~~~~~-~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~- 130 (293)
.+.||||||+. +++ .|+|++ .++....+ +....+|++.||+.|++.||+.+.+ ..+|.|+|||++|++.|.+
T Consensus 4 ~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~ 81 (146)
T 3h08_A 4 TITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEG 81 (146)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSS
T ss_pred eEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHH
Confidence 57899999998 443 677765 34422222 2223578999999999999999976 5799999999999999988
Q ss_pred C--------CC--Ch-h-HHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccC
Q psy15839 131 K--------NT--SI-P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDG 181 (293)
Q Consensus 131 ~--------~~--~~-~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 181 (293)
+ +. .+ + ....+++.+..+... ..|.|.|||||+|++|||.||+|||+|+.
T Consensus 82 w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 82 WLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp HHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 2 11 11 1 123334434333332 46999999999999999999999999974
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.90 E-value=2.7e-23 Score=172.20 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=93.0
Q ss_pred eEEEEEecCCC-CCC-eeEEEEE--CCeeEEe--ecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhc
Q psy15839 57 VVDLSLYGSKT-IQN-TSCAVYA--GGSAKSY--ILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN 130 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~~v~~--~~~~~~~--~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~ 130 (293)
.+.||||||+. +++ .|+|++. .+....+ ++ ..+|++.||+.|++.||+.+.+. .+|.|+|||+++++.|.+
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHHH
Confidence 57899999998 444 6777653 3432222 23 35689999999999999999763 789999999999999997
Q ss_pred C--------C-C-Ch-h-HHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccCCccc
Q psy15839 131 K--------N-T-SI-P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEFV 185 (293)
Q Consensus 131 ~--------~-~-~~-~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~~~ 185 (293)
| + . ++ + ....+++.+..+.. ...|.|.|||||+|++|||.||+|||+|+..+..
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 3 2 1 12 2 12344455555443 4689999999999999999999999999866544
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.89 E-value=4.1e-23 Score=171.65 Aligned_cols=123 Identities=18% Similarity=0.241 Sum_probs=91.6
Q ss_pred CeEEEEEecCCC-CCC-eeEEEEE--CCeeEEe--ecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhh
Q psy15839 56 PVVDLSLYGSKT-IQN-TSCAVYA--GGSAKSY--ILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIA 129 (293)
Q Consensus 56 ~~~~iytDGS~~-~~~-~G~~v~~--~~~~~~~--~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~ 129 (293)
..+.||||||+. +++ .|+|++. .+....+ ++ ..+|++.||+.|++.||+.+.+. ..|.|+|||++|++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHH
Confidence 467899999998 444 6777653 4432222 23 35789999999999999998653 78999999999999999
Q ss_pred c--------CCC--Ch-h-HHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccCC
Q psy15839 130 N--------KNT--SI-P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 182 (293)
Q Consensus 130 ~--------~~~--~~-~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~ 182 (293)
+ .+. .+ + ....+++.+..+.. ...|.|.|||||+|++|||.||+|||+|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 8 331 12 2 12344444444443 4689999999999999999999999999865
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.89 E-value=3e-23 Score=173.57 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=90.2
Q ss_pred eEEEEEecCCC-CCC-eeEEE--EECCeeE-EeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhcC
Q psy15839 57 VVDLSLYGSKT-IQN-TSCAV--YAGGSAK-SYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK 131 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~~v--~~~~~~~-~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~ 131 (293)
.+.||||||+. +++ .|+|+ +.++... ..+....++|+.||+.|++.||+.+. ...|.|+|||++++++|-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~---~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE---GKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHTB---TSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHcc---CceEEEEEchHHHHhhhhcc
Confidence 37899999998 444 56664 3333322 22456678999999999999999992 57899999999999999211
Q ss_pred CCChhH-HHHHH-HHHHHHhhCCceEEEEEeCCCCC-----ChhhHHHHHHHhhccCCccc
Q psy15839 132 NTSIPL-IAHIL-NTWHTLKSCGKKVAFLWCPSHTG-----ISGNEIVDRATRQLDGAEFV 185 (293)
Q Consensus 132 ~~~~~~-~~~i~-~~~~~l~~~~~~v~~~WVpgH~g-----i~gNe~AD~lAk~a~~~~~~ 185 (293)
....++ ..+++ +++..+ ..+..|.|.|||||+| ++|||.||+|||+|+..+..
T Consensus 100 ~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCC
Confidence 111121 22322 233333 3578999999999999 99999999999999865433
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.88 E-value=4e-23 Score=173.14 Aligned_cols=125 Identities=20% Similarity=0.118 Sum_probs=91.6
Q ss_pred eEEEEEecCCC-CCC-eeEEEEE--CCeeEEee-cCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhc-
Q psy15839 57 VVDLSLYGSKT-IQN-TSCAVYA--GGSAKSYI-LNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN- 130 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~~v~~--~~~~~~~~-~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~- 130 (293)
.+.||||||+. +++ .|+|++. .+....+. ....+|++.||+.|++.||+.+... .+|.|+|||+++++.|.+
T Consensus 8 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~ 85 (166)
T 1ril_A 8 RVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEG 85 (166)
T ss_dssp CCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSS
T ss_pred cEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhh
Confidence 56799999998 444 6778664 33222221 1135789999999999999998764 589999999999999998
Q ss_pred C--------C-C-Ch-h-HHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccCCcc
Q psy15839 131 K--------N-T-SI-P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEF 184 (293)
Q Consensus 131 ~--------~-~-~~-~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~~ 184 (293)
| + . ++ + ....+++.+..+.. ...|.|.|||||+|++||+.||+|||+|+....
T Consensus 86 w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 86 WLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 2 2 2 22 2 12344444444444 358999999999999999999999999986543
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.87 E-value=9.4e-22 Score=164.39 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=88.5
Q ss_pred eEEEEEecCCC-CCC------eeEEEEE--CC----eeEEeecC-CCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcH
Q psy15839 57 VVDLSLYGSKT-IQN------TSCAVYA--GG----SAKSYILN-NINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSM 122 (293)
Q Consensus 57 ~~~iytDGS~~-~~~------~G~~v~~--~~----~~~~~~~~-~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~ 122 (293)
.+.|||||||. |++ .|+||+. .+ ....+... ...+++.||+.|+..||+.+.+.+ .+|.|+|||+
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~ 85 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSF 85 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCH
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChH
Confidence 36799999998 544 6788763 22 12233332 456788999999999999887643 5799999999
Q ss_pred HHHHHhhcC--------CC--Ch-h-HHHHHHHHHHHHhhCCceEEEEEeCCCCCC------hhhHHHHHHHhhcc
Q psy15839 123 SALTSIANK--------NT--SI-P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGI------SGNEIVDRATRQLD 180 (293)
Q Consensus 123 ~ai~~l~~~--------~~--~~-~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi------~gNe~AD~lAk~a~ 180 (293)
+|+++|..| +. .+ + ...++++.+..+......|.|.|||||+|+ +|||.||+||++|+
T Consensus 86 Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA 161 (165)
T 2lsn_A 86 YVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS 161 (165)
T ss_dssp HHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence 999999863 21 12 2 233444444444445568999999999994 68999999999986
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.84 E-value=8.2e-21 Score=153.33 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=89.8
Q ss_pred eEEEEEecCCC-CC-CeeEEEEE-C-C-ee-EEe-ecCCCCchhHHHHHHHHHHHHHhhcCCCc----cEEEEeCcHHHH
Q psy15839 57 VVDLSLYGSKT-IQ-NTSCAVYA-G-G-SA-KSY-ILNNINSIFTAELLALVFCLDSVKNRPDV----NTLIVCDSMSAL 125 (293)
Q Consensus 57 ~~~iytDGS~~-~~-~~G~~v~~-~-~-~~-~~~-~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~----~i~I~tDS~~ai 125 (293)
.+.||||||+. ++ ..|+|++. . + .. ..+ +....+|++.||+.|++.||+.+.+.+.. +|.|+|||++++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi 82 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIV 82 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHH
Confidence 57899999998 43 36777653 2 2 11 122 22234689999999999999999887666 999999999999
Q ss_pred HHhhcCCC-ChhHHHHHHHHHHHH-hhCCceEEEEEeCCCCCChhhHHHHHHHhhccC
Q psy15839 126 TSIANKNT-SIPLIAHILNTWHTL-KSCGKKVAFLWCPSHTGISGNEIVDRATRQLDG 181 (293)
Q Consensus 126 ~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 181 (293)
+.+++++. .++-...++..+..+ ......|.|.||| .++||.||+|||+|..
T Consensus 83 ~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 83 RQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAID 136 (140)
T ss_dssp HHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHH
T ss_pred HHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHH
Confidence 99999875 443222334444444 4556789999999 4899999999999864
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.84 E-value=7.8e-21 Score=153.99 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=93.0
Q ss_pred eEEEEEecCCC-CC-CeeEEEE--ECC--e-eEEe-ecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHh
Q psy15839 57 VVDLSLYGSKT-IQ-NTSCAVY--AGG--S-AKSY-ILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSI 128 (293)
Q Consensus 57 ~~~iytDGS~~-~~-~~G~~v~--~~~--~-~~~~-~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l 128 (293)
.+.||||||+. ++ ..|+|++ ..+ . ...+ +....++++.||+.|++.||+.+.+.+..+|.|+|||+++++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 47899999988 33 3677754 332 1 1122 22236789999999999999999987788999999999999999
Q ss_pred hcCCC-ChhHHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccC
Q psy15839 129 ANKNT-SIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDG 181 (293)
Q Consensus 129 ~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 181 (293)
++.++ .++....+++.+..+...+..|.|.|||+ ++|+.||+|||+|..
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 132 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMD 132 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHH
Confidence 99765 44434445555566666778999999994 899999999999964
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.81 E-value=9.6e-20 Score=149.46 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=87.8
Q ss_pred EEEEEecCCC--C-CCeeE-EEE--ECCee-EEee--cC---CCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHH
Q psy15839 58 VDLSLYGSKT--I-QNTSC-AVY--AGGSA-KSYI--LN---NINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSAL 125 (293)
Q Consensus 58 ~~iytDGS~~--~-~~~G~-~v~--~~~~~-~~~~--~~---~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai 125 (293)
+.||||||+. + +..|+ |++ ..+.. ..++ .+ ..++++.||+.|++.||+.+.+.+..+|.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 5799999987 3 44675 754 32322 2222 22 36889999999999999999987788999999999999
Q ss_pred HHhhcCCC-ChhHHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccC
Q psy15839 126 TSIANKNT-SIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDG 181 (293)
Q Consensus 126 ~~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 181 (293)
+.+++++. +++....+++.+..+.... .|.|.|||+ ++|+.||+||++|..
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~ 133 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYE 133 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHH
Confidence 99999875 3333333444444433333 499999998 599999999999974
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.81 E-value=2.6e-19 Score=176.18 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=87.7
Q ss_pred eEEEEEecCCC-CCC-eeEEEEEC-CeeEEeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhcCCC
Q psy15839 57 VVDLSLYGSKT-IQN-TSCAVYAG-GSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT 133 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~~v~~~-~~~~~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~~~ 133 (293)
.+.||||||+. +++ .|+|++.. +....... ..+||+.||+.|++.||+. ...++.|+|||++|+++|+++..
T Consensus 436 ~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~~~ 510 (555)
T 1mu2_A 436 AETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPT 510 (555)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCCS
T ss_pred ceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcccc
Confidence 47899999998 444 56676532 22223333 3678999999999999998 45799999999999999999764
Q ss_pred -Ch-hHHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhcc
Q psy15839 134 -SI-PLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLD 180 (293)
Q Consensus 134 -~~-~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 180 (293)
++ ++...+.+. + ..+..|.|.|||||+|++|||.||+||++|+
T Consensus 511 ~~~~~l~~~~~~~---~-~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 511 ESESKIVNQIIEE---M-IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp EESCHHHHHHHHH---H-HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHH---h-ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 33 344443332 2 2367899999999999999999999999884
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.79 E-value=1.9e-19 Score=177.32 Aligned_cols=114 Identities=26% Similarity=0.341 Sum_probs=85.8
Q ss_pred eEEEEEecCCC-CCC-eeEEEEE-CCeeEEeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhcCCC
Q psy15839 57 VVDLSLYGSKT-IQN-TSCAVYA-GGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT 133 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~~v~~-~~~~~~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~~~ 133 (293)
.+.||||||+. +++ .|+|++. .+....++. ..+||+.||+.|++.||+.+ ..++.|+|||++|++.|+++..
T Consensus 439 ~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~~ 513 (557)
T 2zd1_A 439 AETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQPD 513 (557)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCCS
T ss_pred CEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCCc
Confidence 47899999987 544 5666553 333333443 46789999999999999998 4789999999999999999865
Q ss_pred C-h-hHHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhc
Q psy15839 134 S-I-PLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQL 179 (293)
Q Consensus 134 ~-~-~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a 179 (293)
. + ++..++.+ .+.. ...|.|.|||||+|++|||.||+||++|
T Consensus 514 ~~~~~l~~~~~~---~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 514 KSESELVNQIIE---QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp EESSHHHHHHHH---HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred cCCHHHHHHHHH---HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 3 3 35444433 3333 4689999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.41 E-value=4.1e-14 Score=115.06 Aligned_cols=114 Identities=19% Similarity=0.072 Sum_probs=78.5
Q ss_pred eEEEEEecCCC-CCC-eeEEEEEC--CeeEEeec-CCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhcC
Q psy15839 57 VVDLSLYGSKT-IQN-TSCAVYAG--GSAKSYIL-NNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK 131 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~~v~~~--~~~~~~~~-~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~ 131 (293)
.+.||||||+. +++ .|+|++.. +.....+. -..+||+.||+.|++.||+.+.+.+. .|.|+|||++|++.+.+.
T Consensus 11 ~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~ 89 (142)
T 1zbf_A 11 WESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDK 89 (142)
T ss_dssp SSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHT
T ss_pred eEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcC
Confidence 56799999988 544 67786643 22222211 12568999999999999999998766 899999999999999987
Q ss_pred CC-C--h-h-HHHHHHHHH----HHHhhCCceEEEEEeCCCCCChhhHHHH
Q psy15839 132 NT-S--I-P-LIAHILNTW----HTLKSCGKKVAFLWCPSHTGISGNEIVD 173 (293)
Q Consensus 132 ~~-~--~-~-~~~~i~~~~----~~l~~~~~~v~~~WVpgH~gi~gNe~AD 173 (293)
+. . + + ...++++.+ .-+.. ..++...|.-|++.-||.-||
T Consensus 90 ~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 90 KAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp CCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTC
T ss_pred CccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCccc
Confidence 62 1 1 1 233344433 33333 334445566688888998887
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.23 E-value=1e-11 Score=99.44 Aligned_cols=74 Identities=20% Similarity=0.113 Sum_probs=54.9
Q ss_pred eEEEEEecCCC-CCC-eeE-EEEECC-eeE-EeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCcHHHHHHhhcC
Q psy15839 57 VVDLSLYGSKT-IQN-TSC-AVYAGG-SAK-SYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK 131 (293)
Q Consensus 57 ~~~iytDGS~~-~~~-~G~-~v~~~~-~~~-~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~ 131 (293)
...||||||++ |++ .|+ ||+..+ ... ..+.-..+||+.||+.|++.||+.+.+.+.. +.|+|||++|++.|.++
T Consensus 5 ~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 5 WESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp SSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHT
T ss_pred ceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcC
Confidence 45699999998 655 666 454332 222 1221236789999999999999999876543 89999999999999975
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=81.07 E-value=0.44 Score=44.92 Aligned_cols=42 Identities=5% Similarity=-0.137 Sum_probs=32.1
Q ss_pred CCchhHHHHHHHHHHHHHhhcC-CCccEEEEeCcHHHHHHhhcC
Q psy15839 89 INSIFTAELLALVFCLDSVKNR-PDVNTLIVCDSMSALTSIANK 131 (293)
Q Consensus 89 ~~~~~~AEl~Ai~~AL~~~~~~-~~~~i~I~tDS~~ai~~l~~~ 131 (293)
.-+++..|++||..|++..... ....+.|+||+. ++..+.+.
T Consensus 386 ~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 386 GWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp SSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence 3456789999999999988654 457899999996 55555543
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=58.66 E-value=23 Score=27.93 Aligned_cols=54 Identities=17% Similarity=-0.052 Sum_probs=33.9
Q ss_pred CCCeeEEEEECCeeEEeecCCCC----chhHHHHHHHHHHHHHhhcCCCccEEEEeCcH
Q psy15839 68 IQNTSCAVYAGGSAKSYILNNIN----SIFTAELLALVFCLDSVKNRPDVNTLIVCDSM 122 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~~~----~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~ 122 (293)
+..||++++..+..+..+..-+. -...||..||..|... -......+.|++|..
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 34688888754433333432221 1246999999999976 333457888998853
No 19
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=56.91 E-value=16 Score=29.81 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=32.1
Q ss_pred CCCeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEe
Q psy15839 68 IQNTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVC 119 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t 119 (293)
+..+|+.++.++.....+.... .-...||+.||..|.+..........++|+
T Consensus 35 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 3457887776554443332211 113479999999998876544455677777
No 20
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=52.37 E-value=21 Score=28.67 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=32.6
Q ss_pred CCCeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEe
Q psy15839 68 IQNTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVC 119 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t 119 (293)
+..+|+.++.++.....+.... .-.-.||+.||..|.+.+........++|+
T Consensus 31 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 31 GGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 4458888776554443332211 113469999999998876444456677777
No 21
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=51.80 E-value=19 Score=27.99 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=31.2
Q ss_pred CCCeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEe
Q psy15839 68 IQNTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVC 119 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t 119 (293)
+..+|+.++.++.....+.... .-...||..||..|.+..........++|+
T Consensus 23 ~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 23 EVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 3458888777554433332221 113469999999998865443445566665
No 22
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=51.09 E-value=32 Score=27.30 Aligned_cols=52 Identities=8% Similarity=-0.088 Sum_probs=32.4
Q ss_pred CCCeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEe
Q psy15839 68 IQNTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVC 119 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t 119 (293)
+..+|+.++.++.....+.... .-...||..||..|.+..........++|+
T Consensus 26 ~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 3457888777554433332211 122479999999998876544556777776
No 23
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=51.05 E-value=23 Score=28.63 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=31.7
Q ss_pred CCCeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEe
Q psy15839 68 IQNTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVC 119 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t 119 (293)
+..+|+.++.++.....+.... .-...||..||..|.+..........++|+
T Consensus 42 ~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 42 EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 3457877776544333332211 112469999999998876544456777776
No 24
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=47.89 E-value=21 Score=33.12 Aligned_cols=67 Identities=7% Similarity=-0.073 Sum_probs=38.9
Q ss_pred eEEEEEecCCCCCCeeEEEEECC-e---eEEeecCCCCchhHHHHHH-HHHHHHHhhcC----CCccEEEEeCcHHH
Q psy15839 57 VVDLSLYGSKTIQNTSCAVYAGG-S---AKSYILNNINSIFTAELLA-LVFCLDSVKNR----PDVNTLIVCDSMSA 124 (293)
Q Consensus 57 ~~~iytDGS~~~~~~G~~v~~~~-~---~~~~~~~~~~~~~~AEl~A-i~~AL~~~~~~----~~~~i~I~tDS~~a 124 (293)
.+.++||+|.. +..|+.+..++ . +..+........+.-|++| |+.||+..... ....+.++||.+..
T Consensus 324 ~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~ 399 (428)
T 2zd1_B 324 DLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWE 399 (428)
T ss_dssp CCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHH
T ss_pred CEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHH
Confidence 46799999852 22233333332 1 2233422233445677777 99999876432 34567889999854
No 25
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=45.17 E-value=58 Score=25.09 Aligned_cols=52 Identities=13% Similarity=-0.036 Sum_probs=32.6
Q ss_pred CeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEeCcH
Q psy15839 70 NTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVCDSM 122 (293)
Q Consensus 70 ~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~ 122 (293)
.+|++++..+..+..+..-+ .-...||..||..|... -......+.|++|..
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 58888876443322332211 12247999999999986 334567888888753
No 26
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=43.69 E-value=61 Score=25.62 Aligned_cols=51 Identities=14% Similarity=-0.109 Sum_probs=31.7
Q ss_pred CeeEEEEECCeeEEeecCCCC----chhHHHHHHHHHHHHHhhcCCCccEEEEeCc
Q psy15839 70 NTSCAVYAGGSAKSYILNNIN----SIFTAELLALVFCLDSVKNRPDVNTLIVCDS 121 (293)
Q Consensus 70 ~~G~~v~~~~~~~~~~~~~~~----~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS 121 (293)
.||+++...+..+..|..-+. .-.-||-.||..|+..- ......|.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 588888766544444432221 12369999999998853 2345567777664
No 27
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=43.57 E-value=30 Score=27.77 Aligned_cols=51 Identities=12% Similarity=-0.004 Sum_probs=30.6
Q ss_pred CCeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEe
Q psy15839 69 QNTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVC 119 (293)
Q Consensus 69 ~~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t 119 (293)
..+|+.++.++.....+.... .-...||..||..|.+..........++|+
T Consensus 29 ~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 29 VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred CcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 347887776554443332211 112479999999998876444445566665
No 28
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=42.19 E-value=8.1 Score=36.53 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=62.6
Q ss_pred CCCCCCCCCeEEEEEecCCCCCCeeEEEEECCeeEEeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEe--CcHHHH
Q psy15839 48 FPPWYSDFPVVDLSLYGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVC--DSMSAL 125 (293)
Q Consensus 48 ~~~W~~~~~~~~iytDGS~~~~~~G~~v~~~~~~~~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t--DS~~ai 125 (293)
-+.|++.--.+.||+|+-...++-|. +-+.+|..-|.++++.+..-|.|.- .|-+
T Consensus 3 ~~~Ww~~~viYei~~~~F~d~~~dg~---------------------Gdl~Gi~~kLdYLk~LGvt~I~L~Pi~~~~~-- 59 (549)
T 4aie_A 3 SASWWKNAVVYQVYPKSFQDSNGDGI---------------------GDLQGIISRLDYLEKLGIDAIWLSPVYQSPG-- 59 (549)
T ss_dssp -CCGGGSCCEEEECGGGTCCSSSSSS---------------------CCHHHHHTTHHHHHHHTCSEEEECCCEECCC--
T ss_pred CchhhccCeEEEEEcchhcCCCCCCC---------------------cCHHHHHHhhHHHHHCCCCEEEeCCCcCCCC--
Confidence 36788877788899987544222121 1256788888899888777666421 1100
Q ss_pred HHhhcCCC-C-----h---hHHHHHHHHHHHHhhCCceEEEEEeCCCCCChhhH
Q psy15839 126 TSIANKNT-S-----I---PLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNE 170 (293)
Q Consensus 126 ~~l~~~~~-~-----~---~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe 170 (293)
-..+.. . . ....++.+++++++++|.+|-+-+|+.|++....-
T Consensus 60 --~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHts~~~~w 111 (549)
T 4aie_A 60 --VDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHTSDQHKW 111 (549)
T ss_dssp --TTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred --CCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECccCCcCCcch
Confidence 001111 1 1 13567888889999999999999999999865443
No 29
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=40.65 E-value=91 Score=21.99 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhCCceEEEEEeCCCCCChhhHHHHHHHhhccCCcccCCCChHHHHHHHHH
Q psy15839 138 IAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKK 199 (293)
Q Consensus 138 ~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~~~~~~~~~~~k~~~k~ 199 (293)
..+|.+++..++..|..+ +.+|-|-+...-||.-.++-|++..-.......+..+-..+++
T Consensus 37 sqdirdiiksmkdngkpl-vvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvre 97 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPL-VVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVRE 97 (112)
T ss_dssp HHHHHHHHHHHTTCCSCE-EEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeE-EEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHH
Confidence 456777788888777765 4578998888899998888888876555544555555555443
No 30
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=38.59 E-value=76 Score=24.69 Aligned_cols=52 Identities=19% Similarity=0.040 Sum_probs=33.1
Q ss_pred CeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEeCcH
Q psy15839 70 NTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVCDSM 122 (293)
Q Consensus 70 ~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~ 122 (293)
.||+++...+..+..+..-+ ....-||..||..|...- ......|.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 58888876554443342211 122469999999998752 23457788988863
No 31
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=37.21 E-value=93 Score=24.11 Aligned_cols=55 Identities=16% Similarity=0.038 Sum_probs=33.6
Q ss_pred CCCeeEEEEECCeeEEeecCCC----CchhHHHHHHHHHHHHHhhcCCCccEEEEeCcH
Q psy15839 68 IQNTSCAVYAGGSAKSYILNNI----NSIFTAELLALVFCLDSVKNRPDVNTLIVCDSM 122 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~~----~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~ 122 (293)
+-.+|+++...+..+..|..-+ ....-||..||..|...-.......+.|++|..
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 89 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCC
Confidence 3458888775443333332211 122469999999998753321267889998763
No 32
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=35.79 E-value=28 Score=33.54 Aligned_cols=74 Identities=14% Similarity=0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhcCCCccEEEE--eCcHHHHHHhhcC-CC------Ch---hHHHHHHHHHHHHhhCCceEEEEEeCCC
Q psy15839 96 ELLALVFCLDSVKNRPDVNTLIV--CDSMSALTSIANK-NT------SI---PLIAHILNTWHTLKSCGKKVAFLWCPSH 163 (293)
Q Consensus 96 El~Ai~~AL~~~~~~~~~~i~I~--tDS~~ai~~l~~~-~~------~~---~~~~~i~~~~~~l~~~~~~v~~~WVpgH 163 (293)
-+.+|..-|.++.+.+...|.+. .++. .++ .. .. ....++.++++.++++|..|-+-||+.|
T Consensus 170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~------~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 243 (583)
T 1ea9_C 170 DLQGVIDHLDHLSKLGVNAVYFTPLFKAT------TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNH 243 (583)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCSSCS------SSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSB
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCccCC------CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcccc
Confidence 46788888999998887777654 1221 122 11 01 1356778888999999999999999999
Q ss_pred CCChhhHHHHHH
Q psy15839 164 TGISGNEIVDRA 175 (293)
Q Consensus 164 ~gi~gNe~AD~l 175 (293)
++....-.-|.+
T Consensus 244 ~~~~~~~f~~~~ 255 (583)
T 1ea9_C 244 SGRTFPPFVDVL 255 (583)
T ss_dssp CCTTTHHHHHHH
T ss_pred CCCccHHHHHHH
Confidence 987554333333
No 33
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=35.11 E-value=54 Score=26.87 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=25.4
Q ss_pred CCCeeEEEEECCeeEEeecCC----CCchhHHHHHHHHHHHHHhh
Q psy15839 68 IQNTSCAVYAGGSAKSYILNN----INSIFTAELLALVFCLDSVK 108 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~----~~~~~~AEl~Ai~~AL~~~~ 108 (293)
+..+|+.++.++.....+... ..-.-.||+.||..|.+.+.
T Consensus 45 ~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~ 89 (189)
T 3dh1_A 45 EVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCR 89 (189)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHh
Confidence 345787777665444444321 22234799999999987643
No 34
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=34.11 E-value=11 Score=25.79 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=22.0
Q ss_pred CCCcccCCCccc------cccCCCCchhhhhHhhhh
Q psy15839 263 PSCQSSQLSSQS------SEDKSKSPEQRSEVVLVL 292 (293)
Q Consensus 263 p~C~~Cg~~~~~------l~~Cp~~~~~R~~~~~~~ 292 (293)
..|++|+.+..+ .-.||+..+.=.|+.+.|
T Consensus 31 NiCPYC~nRls~eGl~RHV~~CPKR~erleEielyl 66 (77)
T 2l7x_A 31 NICPYCASRLTSDGLARHVTQCPKRKEKVEETELYL 66 (77)
T ss_dssp TCCTTTCCCCCTTTHHHHHTTCSHHHHHHHHHTTTT
T ss_pred ccChhhhccCCccchhhhcccCccHHHHHHHHHHHh
Confidence 469999977655 778998877766666543
No 35
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=33.55 E-value=17 Score=28.21 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=15.6
Q ss_pred CCCCCCcccCCCcc----ccccCCC
Q psy15839 260 SDPPSCQSSQLSSQ----SSEDKSK 280 (293)
Q Consensus 260 ~~~p~C~~Cg~~~~----~l~~Cp~ 280 (293)
..-|.||.|+.+.+ .++-||-
T Consensus 25 ~~lP~CP~C~seytYeDg~l~vCPe 49 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGALLVCPE 49 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSSEEETT
T ss_pred ccCCCCCCCCCcceEecCCeEECCc
Confidence 34699999997542 2999985
No 36
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=32.88 E-value=73 Score=24.29 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=31.7
Q ss_pred CCeeEEEEECCeeEEeecC--CCCchhHHHHHHHHHHHHHhhcCCCccEEEEeCc
Q psy15839 69 QNTSCAVYAGGSAKSYILN--NINSIFTAELLALVFCLDSVKNRPDVNTLIVCDS 121 (293)
Q Consensus 69 ~~~G~~v~~~~~~~~~~~~--~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS 121 (293)
-.||+++...+..+..+.. .......||..||..|... -......+.|++|.
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 3588887754433222322 1222347999999999985 22345677888875
No 37
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=32.17 E-value=13 Score=35.49 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=60.5
Q ss_pred CCCCCCCCeEEEEEecCCCCCCeeEEEEECCeeEEeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEe--CcHHHHH
Q psy15839 49 PPWYSDFPVVDLSLYGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVC--DSMSALT 126 (293)
Q Consensus 49 ~~W~~~~~~~~iytDGS~~~~~~G~~v~~~~~~~~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t--DS~~ai~ 126 (293)
|.|++..-.+.||+|.-+..++-|. +-+.+|..-|+++.+.+..-|.|.- .|-.
T Consensus 3 ~~W~~~~viYqi~~~~F~~~~~dg~---------------------Gdl~gi~~~Ldyl~~LGv~~I~l~Pi~~~~~--- 58 (543)
T 2zic_A 3 KHWWHKATVYQIYPKSFMDTNGDGI---------------------GDLKGITSKLDYLQKLGVMAIWLSPVYDSPM--- 58 (543)
T ss_dssp CCGGGGCCEEEECGGGTCCSSSSSS---------------------CCHHHHHHTHHHHHHHTCSEEEECCCEECCC---
T ss_pred ccchhhCeEEEEEcHHhcCCCCCCc---------------------cCHHHHHHHHHHHHHcCCCEEEECCcccCCC---
Confidence 6788888888999887543222111 2256777778888877766665421 1100
Q ss_pred HhhcCCC-C-----h---hHHHHHHHHHHHHhhCCceEEEEEeCCCCCChh
Q psy15839 127 SIANKNT-S-----I---PLIAHILNTWHTLKSCGKKVAFLWCPSHTGISG 168 (293)
Q Consensus 127 ~l~~~~~-~-----~---~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~g 168 (293)
-..+.. . . ....++.+++..++++|.+|-+-+|+.|++...
T Consensus 59 -~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~s~~~ 108 (543)
T 2zic_A 59 -DDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEH 108 (543)
T ss_dssp -TTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTS
T ss_pred -CCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecCcccccc
Confidence 001111 1 1 135677888888999999999999999998654
No 38
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=31.26 E-value=79 Score=24.55 Aligned_cols=53 Identities=17% Similarity=-0.017 Sum_probs=33.7
Q ss_pred CCeeEEEEECCeeEEeecCCCCc----hhHHHHHHHHHHHHHhhc-CCCccEEEEeCc
Q psy15839 69 QNTSCAVYAGGSAKSYILNNINS----IFTAELLALVFCLDSVKN-RPDVNTLIVCDS 121 (293)
Q Consensus 69 ~~~G~~v~~~~~~~~~~~~~~~~----~~~AEl~Ai~~AL~~~~~-~~~~~i~I~tDS 121 (293)
=.||+++...+..+..|..-+.. -.-||-.||..|+..-.. .....|.|.+|.
T Consensus 32 F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 32 FKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGET 89 (138)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEESC
T ss_pred CCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcCC
Confidence 35899888766555444332222 236999999999875321 135678888886
No 39
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=25.41 E-value=48 Score=20.03 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.1
Q ss_pred CCCCCCCcccCCCccccccCCCCc
Q psy15839 259 RSDPPSCQSSQLSSQSSEDKSKSP 282 (293)
Q Consensus 259 ~~~~p~C~~Cg~~~~~l~~Cp~~~ 282 (293)
..+...|..||..-|-..+||+-.
T Consensus 7 ~~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 7 QLDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SCCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCCCeeeECCCCCcchhhCcCCc
Confidence 345678999999888899999754
No 40
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=24.96 E-value=38 Score=30.84 Aligned_cols=66 Identities=11% Similarity=-0.033 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCCccEEEEe--CcHHHHHHhhcCC------CCh-h---HHHHHHHHHHHHhhCCceEEEEEeCCCC
Q psy15839 97 LLALVFCLDSVKNRPDVNTLIVC--DSMSALTSIANKN------TSI-P---LIAHILNTWHTLKSCGKKVAFLWCPSHT 164 (293)
Q Consensus 97 l~Ai~~AL~~~~~~~~~~i~I~t--DS~~ai~~l~~~~------~~~-~---~~~~i~~~~~~l~~~~~~v~~~WVpgH~ 164 (293)
+.+|..-|+++.+.+...|.|.- ++.+ ..+. .-. + ...++.++++.++++|..|-+-+|+.|+
T Consensus 20 ~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~-----~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~ 94 (405)
T 1ht6_A 20 YNMMMGKVDDIAAAGVTHVWLPPPSHSVS-----NEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHR 94 (405)
T ss_dssp HHHHHTTHHHHHHTTCCEEEECCCSCBSS-----TTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCC-----CCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcc
Confidence 67788888888888777766531 1110 0111 111 2 3567788888999999999999999999
Q ss_pred CCh
Q psy15839 165 GIS 167 (293)
Q Consensus 165 gi~ 167 (293)
+..
T Consensus 95 ~~~ 97 (405)
T 1ht6_A 95 CAD 97 (405)
T ss_dssp CCS
T ss_pred cCC
Confidence 864
No 41
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=24.85 E-value=1.4e+02 Score=23.02 Aligned_cols=51 Identities=14% Similarity=-0.048 Sum_probs=30.8
Q ss_pred CeeEEEEECCeeEEeecCCCC----chhHHHHHHHHHHHHHhhcCCCccEEEEeCc
Q psy15839 70 NTSCAVYAGGSAKSYILNNIN----SIFTAELLALVFCLDSVKNRPDVNTLIVCDS 121 (293)
Q Consensus 70 ~~G~~v~~~~~~~~~~~~~~~----~~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS 121 (293)
.||+++...+..+..+..-+. .-.-||..||..|...- ......|.|.+|.
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~~ 86 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDGN 86 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 588888765544434422211 12369999999998753 2234566777663
No 42
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=23.93 E-value=1.5e+02 Score=26.68 Aligned_cols=38 Identities=13% Similarity=-0.061 Sum_probs=25.1
Q ss_pred CCCeeEEEEECCeeEEeecCCCCchhHHHHHHHHHHHH
Q psy15839 68 IQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLD 105 (293)
Q Consensus 68 ~~~~G~~v~~~~~~~~~~~~~~~~~~~AEl~Ai~~AL~ 105 (293)
+..+|+.++.++.....+.......-.||..||..|.+
T Consensus 35 ~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~ 72 (360)
T 2hxv_A 35 NPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARK 72 (360)
T ss_dssp SCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHHHh
Confidence 55689888876654444433322345799999999854
No 43
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=22.42 E-value=50 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=19.4
Q ss_pred CCCCCCcccCCCccccccCCCCch
Q psy15839 260 SDPPSCQSSQLSSQSSEDKSKSPE 283 (293)
Q Consensus 260 ~~~p~C~~Cg~~~~~l~~Cp~~~~ 283 (293)
.+...|..||..-|=-.+||+...
T Consensus 21 ~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp CCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCcceeCCCCCcccccCcCCcc
Confidence 345789999998888999998754
No 44
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=22.40 E-value=1e+02 Score=29.43 Aligned_cols=75 Identities=11% Similarity=-0.034 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcCCCccEEEE--eCcHHHHHHhhcC-CC-C-----h---hHHHHHHHHHHHHhhCCceEEEEEeCCC
Q psy15839 96 ELLALVFCLDSVKNRPDVNTLIV--CDSMSALTSIANK-NT-S-----I---PLIAHILNTWHTLKSCGKKVAFLWCPSH 163 (293)
Q Consensus 96 El~Ai~~AL~~~~~~~~~~i~I~--tDS~~ai~~l~~~-~~-~-----~---~~~~~i~~~~~~l~~~~~~v~~~WVpgH 163 (293)
-+.+|..-|.++.+.+...|.+. .++. .++ .. . . ....++.++++.++++|..|-+-||+.|
T Consensus 171 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~------~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH 244 (585)
T 1wzl_A 171 DLKGVIDRLPYLEELGVTALYFTPIFASP------SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNH 244 (585)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECS------SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSB
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCC------CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 46778888999988877766643 1121 122 11 1 1 1356778888999999999999999999
Q ss_pred CCChhhHHHHHHH
Q psy15839 164 TGISGNEIVDRAT 176 (293)
Q Consensus 164 ~gi~gNe~AD~lA 176 (293)
++....-.-|.++
T Consensus 245 ~~~~~~~f~~~~~ 257 (585)
T 1wzl_A 245 AGDQFFAFRDVLQ 257 (585)
T ss_dssp CCTTSHHHHHHHH
T ss_pred CCCccHHHHHHHh
Confidence 9975543333333
No 45
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=22.20 E-value=1.1e+02 Score=29.38 Aligned_cols=75 Identities=13% Similarity=0.015 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhcCCCccEEEE--eCcHHHHHHhhcC-CC-C-----h---hHHHHHHHHHHHHhhCCceEEEEEeCC
Q psy15839 95 AELLALVFCLDSVKNRPDVNTLIV--CDSMSALTSIANK-NT-S-----I---PLIAHILNTWHTLKSCGKKVAFLWCPS 162 (293)
Q Consensus 95 AEl~Ai~~AL~~~~~~~~~~i~I~--tDS~~ai~~l~~~-~~-~-----~---~~~~~i~~~~~~l~~~~~~v~~~WVpg 162 (293)
+-+.+|..-|.++.+.+...|.+. .++. .++ .. . . ....++.++++.++++|..|-+-||+.
T Consensus 173 G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~------~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 246 (588)
T 1j0h_A 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSP------SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFN 246 (588)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECS------SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcccCC------CCCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 347788888999998887777654 1121 122 11 1 1 135677888899999999999999999
Q ss_pred CCCChhhHHHHHH
Q psy15839 163 HTGISGNEIVDRA 175 (293)
Q Consensus 163 H~gi~gNe~AD~l 175 (293)
|++.....-.|.+
T Consensus 247 H~~~~~~~f~~~~ 259 (588)
T 1j0h_A 247 HCGYEFAPFQDVW 259 (588)
T ss_dssp BCCTTCHHHHHHH
T ss_pred cCcccchhHHHHH
Confidence 9997665444443
No 46
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=22.14 E-value=41 Score=32.10 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=60.1
Q ss_pred CCCCCCCCCeEEEEEecCCCCCCeeEEEEECCeeEEeecCCCCchhHHHHHHHHHHHHHhhcCCCccEEEEe--CcHHHH
Q psy15839 48 FPPWYSDFPVVDLSLYGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVC--DSMSAL 125 (293)
Q Consensus 48 ~~~W~~~~~~~~iytDGS~~~~~~G~~v~~~~~~~~~~~~~~~~~~~AEl~Ai~~AL~~~~~~~~~~i~I~t--DS~~ai 125 (293)
.+.|++..-.+.||+|.-+..++-|. +-+.+|..-|.++.+.+..-|.|.- +|-.
T Consensus 3 ~~~w~~~~viYqi~~~~F~~~~~dg~---------------------Gdl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~-- 59 (557)
T 1zja_A 3 GAPWWKSAVFYQVYPRSFKDTNGDGI---------------------GDFKGLTEKLDYLKGLGIDAIWINPHYASPN-- 59 (557)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSS---------------------CCHHHHHHTHHHHHHHTCCEEEECCCEECCC--
T ss_pred cchhhhcCcEEEEEchHhcCCCCCCc---------------------cCHHHHHHHHHHHHHcCCCEEEECCCccCCC--
Confidence 45787777778888877443222111 1256777788888887776665421 1100
Q ss_pred HHhhcCCC-C-----h---hHHHHHHHHHHHHhhCCceEEEEEeCCCCCCh
Q psy15839 126 TSIANKNT-S-----I---PLIAHILNTWHTLKSCGKKVAFLWCPSHTGIS 167 (293)
Q Consensus 126 ~~l~~~~~-~-----~---~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~ 167 (293)
-..+.. . . ....++.++++.++++|..|-+-+|+.|++..
T Consensus 60 --~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NHts~~ 108 (557)
T 1zja_A 60 --TDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQ 108 (557)
T ss_dssp --TTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred --CCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 001111 1 0 13567788888899999999999999999854
No 47
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=21.91 E-value=1.1e+02 Score=29.68 Aligned_cols=70 Identities=14% Similarity=0.009 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEe--CcHHHHHHhhcC-CC-C-----h---hHHHHHHHHHHHHhhCCceEEEEEeCCC
Q psy15839 96 ELLALVFCLDSVKNRPDVNTLIVC--DSMSALTSIANK-NT-S-----I---PLIAHILNTWHTLKSCGKKVAFLWCPSH 163 (293)
Q Consensus 96 El~Ai~~AL~~~~~~~~~~i~I~t--DS~~ai~~l~~~-~~-~-----~---~~~~~i~~~~~~l~~~~~~v~~~WVpgH 163 (293)
=+.||..-|.++.+.+..-|.|.- .| -..+ .. . . ....++.+++++++++|..|-+-||+.|
T Consensus 237 dl~Gi~~kLdYLk~LGvt~I~L~Pif~s------~~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH 310 (645)
T 4aef_A 237 DLIGIKEKIDHLVNLGINAIYLTPIFSS------LTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFHH 310 (645)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEEE------SSTTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCCCC------CCCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEecccc
Confidence 378899999999988877766521 11 1122 11 0 1 1356778888899999999999999999
Q ss_pred CCChhhHH
Q psy15839 164 TGISGNEI 171 (293)
Q Consensus 164 ~gi~gNe~ 171 (293)
++....-.
T Consensus 311 ts~~h~wf 318 (645)
T 4aef_A 311 TSFFHPYF 318 (645)
T ss_dssp CCTTSHHH
T ss_pred cccCCchh
Confidence 98654433
No 48
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=21.90 E-value=68 Score=29.37 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCCccEEEEe--CcHHHHHHhhcCCC-C-----h---hHHHHHHHHHHHHhhCCceEEEEEeCCCCC
Q psy15839 97 LLALVFCLDSVKNRPDVNTLIVC--DSMSALTSIANKNT-S-----I---PLIAHILNTWHTLKSCGKKVAFLWCPSHTG 165 (293)
Q Consensus 97 l~Ai~~AL~~~~~~~~~~i~I~t--DS~~ai~~l~~~~~-~-----~---~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g 165 (293)
+.+|..-|+++.+.+..-|.|.- .|.+ ..+.. . . ....++.++++.++++|..|-+-+|+.|++
T Consensus 22 ~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-----~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~ 96 (441)
T 1lwj_A 22 FRGLKNAVSYLKELGIDFVWLMPVFSSIS-----FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTG 96 (441)
T ss_dssp HHHHHHTHHHHHHTTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTBCC
T ss_pred HHHHHHhhHHHHHcCCCEEEeCCCcCCCC-----CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCccc
Confidence 66777788899888777666421 1110 01111 1 1 135677888889999999999999999999
Q ss_pred Chhh
Q psy15839 166 ISGN 169 (293)
Q Consensus 166 i~gN 169 (293)
....
T Consensus 97 ~~~~ 100 (441)
T 1lwj_A 97 FLHT 100 (441)
T ss_dssp TTCH
T ss_pred CchH
Confidence 7654
No 49
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=21.23 E-value=43 Score=31.22 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhcCCCccEEEE--eCcHHHHHHhhcCCC-C-----h---hHHHHHHHHHHHHhhCCceEEEEEeCCCC
Q psy15839 96 ELLALVFCLDSVKNRPDVNTLIV--CDSMSALTSIANKNT-S-----I---PLIAHILNTWHTLKSCGKKVAFLWCPSHT 164 (293)
Q Consensus 96 El~Ai~~AL~~~~~~~~~~i~I~--tDS~~ai~~l~~~~~-~-----~---~~~~~i~~~~~~l~~~~~~v~~~WVpgH~ 164 (293)
-+.+|..-|.++.+.+..-|.|. .+|.+ ..... . . ....++.+++++++++|.+|-+-+|+.|+
T Consensus 54 dl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~ 128 (488)
T 2wc7_A 54 DLWGIMEDLDYIQNLGINAIYFTPIFQSAS-----NHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHS 128 (488)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEESCCEEECT-----TCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCCCCCC-----CCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcC
Confidence 36788889999988877766642 11110 11111 0 1 24577888889999999999999999999
Q ss_pred CChhh
Q psy15839 165 GISGN 169 (293)
Q Consensus 165 gi~gN 169 (293)
+...-
T Consensus 129 s~~~~ 133 (488)
T 2wc7_A 129 SRGFF 133 (488)
T ss_dssp CSSSH
T ss_pred CCcCH
Confidence 86543
No 50
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=21.05 E-value=24 Score=24.33 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=21.3
Q ss_pred CCCCCcccCCCccc-----cccCCCCchhhhhHhhh
Q psy15839 261 DPPSCQSSQLSSQS-----SEDKSKSPEQRSEVVLV 291 (293)
Q Consensus 261 ~~p~C~~Cg~~~~~-----l~~Cp~~~~~R~~~~~~ 291 (293)
.+-.|+ ||...++ +..+...+++|.-+..+
T Consensus 20 kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~l 54 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKL 54 (71)
T ss_dssp SEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHH
T ss_pred cEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHH
Confidence 456897 9987654 66688888888755543
Done!