RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15839
         (293 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 33.3 bits (75), Expect = 0.010
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 143 NTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQ 178
           N         + +   W P+H GI GN+ VD    Q
Sbjct: 89  NQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQ 124


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 31.8 bits (71), Expect = 0.038
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 75  VYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN---- 130
            +              +    EL A +  L ++K   +V+  +  DS     +       
Sbjct: 26  RFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVD--LYTDSHYLKKAFTEGWLE 83

Query: 131 --------KNTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQ 178
                        P+    L     L     +V F +   HTG   NE VDR  R+
Sbjct: 84  GWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARR 139


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 31.9 bits (71), Expect = 0.046
 Identities = 7/34 (20%), Positives = 10/34 (29%)

Query: 145 WHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQ 178
                    ++ + W   H G   NE  D   R 
Sbjct: 104 RLDAALGQHQIKWEWVKGHAGHPENERADELARA 137


>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain
           [TaxId: 10090]}
          Length = 106

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 6/89 (6%), Positives = 22/89 (24%)

Query: 192 DLISVGKKYIHEKWQKSWSDLTNNKLKCVKPTIGPWNVSDCNNRYEEVVLTRVRIGHTRL 251
           +  +  KK     W   +  + N ++   K      +    ++     +   +       
Sbjct: 10  EWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDY 69

Query: 252 THSYLFTRSDPPSCQSSQLSSQSSEDKSK 280
                  +            ++  E+ + 
Sbjct: 70  KKKKHVFKLRLSDGNEYLFQAKDDEEMNT 98


>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 418

 Score = 26.7 bits (57), Expect = 4.5
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 4/35 (11%)

Query: 23 KIRFNCIREVSAVLKNTKVVPYSQGFPPWYSDFPV 57
           I +N   E   +     VV   QGFP    DFP 
Sbjct: 9  GIDYNPWVEFVKLASEHDVVNLGQGFP----DFPP 39


>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 122

 Score = 25.2 bits (54), Expect = 6.7
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 192 DLISVGKKYIHEKWQKSWSDLTNNKLKCVK 221
           +  S  KK  +  W K +      ++   K
Sbjct: 19  EWDSTTKKASNRSWDKVYMAAKAGRISFYK 48


>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 196

 Score = 25.1 bits (54), Expect = 9.8
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 216 KLKCVKPTIGPWNVSDCNNRYEEVVLTRVRI----GHTRLTHSYLFTRSDPPSCQSSQLS 271
           K+ C+ P    W +   +  +   +  R+R         + ++    RSD   C+S    
Sbjct: 34  KMGCLVPIQVKWKLDKRH--FNSNLSLRIRFVKYDKKENVEYAIRNPRSDVMKCRSHTER 91

Query: 272 SQ 273
            Q
Sbjct: 92  EQ 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,049,949
Number of extensions: 45411
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 11
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)