BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15840
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QL2|B Chain B, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of
           The Heterodimer E47NEUROD1 BOUND TO DNA
 pdb|2QL2|D Chain D, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of
           The Heterodimer E47NEUROD1 BOUND TO DNA
          Length = 60

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 110 MSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTSA 156
           M GLN A D LR+V+PC     KLSK ETL++A+ YI +L ++L S 
Sbjct: 14  MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSG 60


>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
 pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
          Length = 97

 Score = 32.3 bits (72), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 112 GLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTS 155
            +N+ + +L+E++P I    K+SK E LQ    YI  L+  L S
Sbjct: 39  NMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82


>pdb|2LFH|A Chain A, Solution Nmr Structure Of The Helix-Loop-Helix Domain Of
           Human Id3 Protein, Northeast Structural Genomics
           Consortium Target Hr3111a
 pdb|2LFH|B Chain B, Solution Nmr Structure Of The Helix-Loop-Helix Domain Of
           Human Id3 Protein, Northeast Structural Genomics
           Consortium Target Hr3111a
          Length = 68

 Score = 29.6 bits (65), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 110 MSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLR 150
           +  +N  + RLRE++P +    +LS+ E LQ    YI  L+
Sbjct: 26  LDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQ 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,794,394
Number of Sequences: 62578
Number of extensions: 122803
Number of successful extensions: 186
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 5
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)