Query psy15840
Match_columns 161
No_of_seqs 166 out of 704
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 22:42:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4029|consensus 99.7 2.3E-18 4.9E-23 142.3 6.4 64 94-157 105-169 (228)
2 KOG3898|consensus 99.7 3E-18 6.5E-23 144.9 5.0 64 94-157 68-131 (254)
3 KOG3960|consensus 99.6 3.3E-16 7.2E-21 132.8 7.5 62 95-157 115-176 (284)
4 PF00010 HLH: Helix-loop-helix 99.6 1.4E-14 3.1E-19 95.1 7.0 53 98-150 1-55 (55)
5 KOG4395|consensus 99.5 1.2E-14 2.6E-19 123.4 6.8 67 93-159 169-235 (285)
6 cd00083 HLH Helix-loop-helix d 99.5 2.3E-13 5.1E-18 89.4 7.8 57 97-153 3-59 (60)
7 smart00353 HLH helix loop heli 99.4 1.5E-12 3.2E-17 84.3 7.1 52 103-154 1-52 (53)
8 KOG4447|consensus 99.4 5.2E-13 1.1E-17 106.4 4.7 61 95-156 75-135 (173)
9 KOG0561|consensus 99.2 5.6E-11 1.2E-15 103.5 6.5 57 94-151 56-112 (373)
10 KOG3910|consensus 99.0 5.5E-10 1.2E-14 102.5 7.3 64 94-157 522-586 (632)
11 KOG1319|consensus 98.5 4.9E-07 1.1E-11 74.8 7.1 60 94-153 58-121 (229)
12 KOG1318|consensus 98.4 4.5E-06 9.8E-11 75.5 11.5 65 92-156 227-292 (411)
13 KOG2483|consensus 97.8 4.8E-05 1E-09 64.3 6.5 59 96-154 57-115 (232)
14 KOG3561|consensus 97.1 0.00096 2.1E-08 64.9 5.7 57 96-152 18-75 (803)
15 KOG4304|consensus 96.9 0.001 2.2E-08 56.7 4.1 56 97-152 31-91 (250)
16 KOG4447|consensus 96.9 0.00072 1.6E-08 54.5 2.6 54 99-153 22-76 (173)
17 KOG2588|consensus 96.5 0.0061 1.3E-07 60.2 6.4 57 97-155 275-331 (953)
18 KOG3558|consensus 92.9 0.15 3.3E-06 49.3 4.7 62 92-154 40-102 (768)
19 PLN03217 transcription factor 92.8 0.22 4.9E-06 36.7 4.5 46 109-154 18-66 (93)
20 KOG3560|consensus 90.5 0.23 5E-06 47.3 3.0 44 112-155 39-86 (712)
21 KOG3559|consensus 70.7 4.3 9.4E-05 37.9 3.2 44 107-150 10-54 (598)
22 PF05687 DUF822: Plant protein 52.7 19 0.00042 28.9 3.5 27 98-124 11-37 (150)
23 KOG4395|consensus 42.2 8.1 0.00017 33.8 -0.1 49 94-153 78-132 (285)
24 PLN02705 beta-amylase 35.5 2.5E+02 0.0053 27.7 8.6 28 98-125 84-111 (681)
25 PF08651 DASH_Duo1: DASH compl 30.6 2E+02 0.0042 20.4 5.5 22 104-125 4-25 (78)
26 PF04839 PSRP-3_Ycf65: Plastid 25.4 30 0.00066 22.9 0.5 38 114-151 10-47 (49)
27 PF13815 Dzip-like_N: Iguana/D 23.7 97 0.0021 23.1 3.1 21 136-156 61-81 (118)
28 PRK02724 hypothetical protein; 23.4 82 0.0018 23.9 2.6 38 114-151 44-81 (104)
29 cd06257 DnaJ DnaJ domain or J- 23.0 72 0.0016 19.5 2.0 17 106-122 39-55 (55)
30 smart00271 DnaJ DnaJ molecular 21.8 78 0.0017 19.7 2.0 15 108-122 43-57 (60)
31 KOG1748|consensus 21.8 41 0.00088 26.5 0.7 23 129-151 106-128 (131)
32 PF10392 COG5: Golgi transport 21.2 1.6E+02 0.0034 22.3 3.8 19 107-125 78-96 (132)
33 CHL00163 ycf65 putative riboso 20.1 1.1E+02 0.0023 23.1 2.6 39 114-152 39-77 (99)
No 1
>KOG4029|consensus
Probab=99.74 E-value=2.3e-18 Score=142.29 Aligned_cols=64 Identities=42% Similarity=0.614 Sum_probs=60.0
Q ss_pred HHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy15840 94 VMKKRRLAANARERRRMSGLNEAFDRLREVIPCIGI-EHKLSKFETLQMAQTYIHSLRDLLTSAN 157 (161)
Q Consensus 94 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~-~~kLSKietLr~Ai~YI~~L~~~L~~~~ 157 (161)
....+|.++|+|||.||+.||.||..||.+||..+. ++|||||+|||+||.||.+|+++|+.++
T Consensus 105 ~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 105 QTSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred chhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 345788899999999999999999999999999888 9999999999999999999999999876
No 2
>KOG3898|consensus
Probab=99.72 E-value=3e-18 Score=144.89 Aligned_cols=64 Identities=53% Similarity=0.678 Sum_probs=60.1
Q ss_pred HHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy15840 94 VMKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTSAN 157 (161)
Q Consensus 94 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~~~ 157 (161)
.++.||+++|+|||+|||+||+||+.||.+||++..+.||||||||++|-+||..|++++..+.
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~ 131 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGI 131 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCC
Confidence 5678999999999999999999999999999998999999999999999999999999887653
No 3
>KOG3960|consensus
Probab=99.64 E-value=3.3e-16 Score=132.77 Aligned_cols=62 Identities=39% Similarity=0.552 Sum_probs=54.5
Q ss_pred HHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy15840 95 MKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTSAN 157 (161)
Q Consensus 95 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~~~ 157 (161)
...||.+|..|||+|+++||+||+.|+++- ...++++|.||||||.||.||..|+.||++.+
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT-~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~ 176 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRT-SSNPNQRLPKVEILRSAIRYIERLQALLQEQD 176 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357999999999999999999999996553 23457999999999999999999999998764
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.55 E-value=1.4e-14 Score=95.12 Aligned_cols=53 Identities=49% Similarity=0.726 Sum_probs=49.2
Q ss_pred HhhHhhHHHHHhHHHHHHHHHHHhhcCCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy15840 98 RRLAANARERRRMSGLNEAFDRLREVIPCI--GIEHKLSKFETLQMAQTYIHSLR 150 (161)
Q Consensus 98 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~--~~~~kLSKietLr~Ai~YI~~L~ 150 (161)
||..+|.+||.|+..||.+|+.|+..||.. ....|++|++||..||+||.+|+
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 578899999999999999999999999984 36789999999999999999996
No 5
>KOG4395|consensus
Probab=99.54 E-value=1.2e-14 Score=123.39 Aligned_cols=67 Identities=64% Similarity=0.815 Sum_probs=62.4
Q ss_pred hHHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15840 93 QVMKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTSANSG 159 (161)
Q Consensus 93 ~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~~~~~ 159 (161)
.+.+.||+++|+|||+||..||.|||.||.++|....++||||.|||++|..||..|..+|+....|
T Consensus 169 ~v~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~~ 235 (285)
T KOG4395|consen 169 SVNSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMSG 235 (285)
T ss_pred hHHHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCcccc
Confidence 4677899999999999999999999999999999999999999999999999999999999776543
No 6
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.47 E-value=2.3e-13 Score=89.44 Aligned_cols=57 Identities=51% Similarity=0.723 Sum_probs=53.0
Q ss_pred HHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15840 97 KRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLL 153 (161)
Q Consensus 97 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L 153 (161)
.+|..+|.+||.|+..||.+|+.|+..||....+.|++|+.||..|++||..|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467789999999999999999999999998777899999999999999999999865
No 7
>smart00353 HLH helix loop helix domain.
Probab=99.39 E-value=1.5e-12 Score=84.25 Aligned_cols=52 Identities=52% Similarity=0.749 Sum_probs=48.1
Q ss_pred hHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 103 NARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 103 N~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
|.+||.|+..||.+|+.|+..||....+.+++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999976667999999999999999999998765
No 8
>KOG4447|consensus
Probab=99.37 E-value=5.2e-13 Score=106.41 Aligned_cols=61 Identities=48% Similarity=0.724 Sum_probs=57.4
Q ss_pred HHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy15840 95 MKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTSA 156 (161)
Q Consensus 95 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~~ 156 (161)
.+.+|.-||.|||+|.+.||+||..||..+|+.|. -|||||.||++|..||.+|.++|..+
T Consensus 75 ~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPs-dklSkiqtLklA~ryidfl~~vl~s~ 135 (173)
T KOG4447|consen 75 LQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPS-DKLSKIQTLKLAARYIDFLYQVLQSD 135 (173)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCc-cccccccchhhcccCCchhhhccccc
Confidence 46799999999999999999999999999999876 59999999999999999999999876
No 9
>KOG0561|consensus
Probab=99.16 E-value=5.6e-11 Score=103.55 Aligned_cols=57 Identities=42% Similarity=0.593 Sum_probs=52.3
Q ss_pred HHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15840 94 VMKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRD 151 (161)
Q Consensus 94 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~ 151 (161)
.++-||..||..||+||+.||.+|..||.+||. ..+.||||..||+...+||..|..
T Consensus 56 erRmRReIANsNERRRMQSINAGFqsLr~LlPr-~eGEKLSKAAILQQTa~yI~~Le~ 112 (373)
T KOG0561|consen 56 ERRMRREIANSNERRRMQSINAGFQSLRALLPR-KEGEKLSKAAILQQTADYIHQLEG 112 (373)
T ss_pred HHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCc-ccchhhHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999997 456899999999999999999864
No 10
>KOG3910|consensus
Probab=99.03 E-value=5.5e-10 Score=102.47 Aligned_cols=64 Identities=38% Similarity=0.445 Sum_probs=58.0
Q ss_pred HHHHHhhHhhHHHHHhHHHHHHHHHHH-hhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy15840 94 VMKKRRLAANARERRRMSGLNEAFDRL-REVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTSAN 157 (161)
Q Consensus 94 ~~~~rR~~aN~RER~R~~~lN~AF~~L-R~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~~~ 157 (161)
..+.||.+.|+|||.|+++||+||.+| |-|--++..+|.-+|+-||.+|+..|..|++.+.+.+
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 357899999999999999999999999 6666677789999999999999999999999998754
No 11
>KOG1319|consensus
Probab=98.46 E-value=4.9e-07 Score=74.77 Aligned_cols=60 Identities=30% Similarity=0.424 Sum_probs=51.8
Q ss_pred HHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15840 94 VMKKRRLAANARERRRMSGLNEAFDRLREVIPCIG----IEHKLSKFETLQMAQTYIHSLRDLL 153 (161)
Q Consensus 94 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~----~~~kLSKietLr~Ai~YI~~L~~~L 153 (161)
..-+||.++..-||+|+..||.+|+.|+.+||... .+.||||.-||..||+||.+|..-.
T Consensus 58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k 121 (229)
T KOG1319|consen 58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEK 121 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999543 3459999999999999999997643
No 12
>KOG1318|consensus
Probab=98.37 E-value=4.5e-06 Score=75.45 Aligned_cols=65 Identities=28% Similarity=0.366 Sum_probs=56.7
Q ss_pred chHHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy15840 92 PQVMKKRRLAANARERRRMSGLNEAFDRLREVIPCI-GIEHKLSKFETLQMAQTYIHSLRDLLTSA 156 (161)
Q Consensus 92 p~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~-~~~~kLSKietLr~Ai~YI~~L~~~L~~~ 156 (161)
-.+.++||..||+=||+|+.+||+.+..|...||.. ..+-++.|--||..+++||..|++.++..
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999999999954 35668889999999999999999988743
No 13
>KOG2483|consensus
Probab=97.82 E-value=4.8e-05 Score=64.33 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=51.4
Q ss_pred HHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 96 KKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 96 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
...|..+|+-||+|...|-+.|+.||..||.....++-+-+.+|+.|..||..|+....
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 34788999999999999999999999999987665555589999999999999987654
No 14
>KOG3561|consensus
Probab=97.06 E-value=0.00096 Score=64.92 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=50.8
Q ss_pred HHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15840 96 KKRRLAANARERRRMSGLNEAFDRLREVIPCI-GIEHKLSKFETLQMAQTYIHSLRDL 152 (161)
Q Consensus 96 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~-~~~~kLSKietLr~Ai~YI~~L~~~ 152 (161)
+..|.++|.-||+|+.++|.-+++|-..||.. .-.+|+-|..|||+||..|..+..+
T Consensus 18 r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 18 RKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 44588899999999999999999999999953 3468999999999999999988875
No 15
>KOG4304|consensus
Probab=96.92 E-value=0.001 Score=56.70 Aligned_cols=56 Identities=23% Similarity=0.397 Sum_probs=46.4
Q ss_pred HHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCC-CC----CCCCHHHHHHHHHHHHHHHHHH
Q psy15840 97 KRRLAANARERRRMSGLNEAFDRLREVIPCIG-IE----HKLSKFETLQMAQTYIHSLRDL 152 (161)
Q Consensus 97 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~-~~----~kLSKietLr~Ai~YI~~L~~~ 152 (161)
.|+...=.=||+|+..||..++.||.+||..- .+ .||-|.+||.++++|...|+..
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~ 91 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS 91 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 34555567899999999999999999999432 22 6999999999999999999864
No 16
>KOG4447|consensus
Probab=96.87 E-value=0.00072 Score=54.50 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=45.8
Q ss_pred hhHhhHH-HHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15840 99 RLAANAR-ERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLL 153 (161)
Q Consensus 99 R~~aN~R-ER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L 153 (161)
+.-+|.| ||.|.+.+|++|.-|+..+|..+. .+.+|+.||+.+..||..|.++=
T Consensus 22 ~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa-~gk~~~ktlr~~~~~~~~~dE~q 76 (173)
T KOG4447|consen 22 EECDRQRKERGRKRRLSDASTLLGKLEPGSPA-DGKRGKKTLRIGTDSIQSLDELQ 76 (173)
T ss_pred hhhhhhHHHHhHHhhhhhhhhhccccCCCCCC-cccccccccccCCCchhhHHHHH
Confidence 3334455 999999999999999999998665 58899999999999999998854
No 17
>KOG2588|consensus
Probab=96.47 E-value=0.0061 Score=60.16 Aligned_cols=57 Identities=32% Similarity=0.450 Sum_probs=51.5
Q ss_pred HHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy15840 97 KRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTS 155 (161)
Q Consensus 97 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~ 155 (161)
.+|.+||.=|++=+-.||+-...||+.||.. .-|+.|-++||.||+||.+|+...+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~--~aKl~kSavLr~ai~~i~dl~~~nq~ 331 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGT--EAKLNKSAVLRKAIDYIEDLQGYNQK 331 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCcc--HhhhhhhhhHHHHHHHHHHhhccccc
Confidence 6899999999999999999999999999964 45999999999999999999876544
No 18
>KOG3558|consensus
Probab=92.87 E-value=0.15 Score=49.33 Aligned_cols=62 Identities=26% Similarity=0.440 Sum_probs=47.2
Q ss_pred chHHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 92 PQVMKKRRLAANARERRRMSGLNEAFDRLREVIPCIG-IEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 92 p~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~-~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
|..+..|+.+-...=|.|+.+=|.-|.+|..+||.+. ....|-|+.|+|+||.|.+ |.+++.
T Consensus 40 ~~~~~~rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk~a~ 102 (768)
T KOG3558|consen 40 PRLQELRKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRKFAG 102 (768)
T ss_pred hhHHHHHhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHHHhh
Confidence 4455556666556667888999999999999999433 3569999999999999975 344444
No 19
>PLN03217 transcription factor ATBS1; Provisional
Probab=92.83 E-value=0.22 Score=36.69 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhhcCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 109 RMSGLNEAFDRLREVIPCIG---IEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 109 R~~~lN~AF~~LR~~lP~~~---~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
--.+||+-...|+..||... ...|.|-..+|+.+++||..|..-++
T Consensus 18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvD 66 (93)
T PLN03217 18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVD 66 (93)
T ss_pred CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999643 34588889999999999999876554
No 20
>KOG3560|consensus
Probab=90.48 E-value=0.23 Score=47.28 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCCCC-CCCCCHHHHHHHHHHHHH---HHHHHHhh
Q psy15840 112 GLNEAFDRLREVIPCIGI-EHKLSKFETLQMAQTYIH---SLRDLLTS 155 (161)
Q Consensus 112 ~lN~AF~~LR~~lP~~~~-~~kLSKietLr~Ai~YI~---~L~~~L~~ 155 (161)
.||.-+|.|..+||+.+. -.||.|+.+||+++.|+. +.+-.|.+
T Consensus 39 RLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~ 86 (712)
T KOG3560|consen 39 RLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQ 86 (712)
T ss_pred HhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 379999999999997542 349999999999999975 44555544
No 21
>KOG3559|consensus
Probab=70.74 E-value=4.3 Score=37.87 Aligned_cols=44 Identities=23% Similarity=0.393 Sum_probs=35.1
Q ss_pred HHhHHHHHHHHHHHhhcCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy15840 107 RRRMSGLNEAFDRLREVIPCIG-IEHKLSKFETLQMAQTYIHSLR 150 (161)
Q Consensus 107 R~R~~~lN~AF~~LR~~lP~~~-~~~kLSKietLr~Ai~YI~~L~ 150 (161)
|.|+++=|--|..|.+.||-.. -...|.|..++|+|..||+.-.
T Consensus 10 ~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred HHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 4566677899999999999543 2345999999999999998644
No 22
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=52.74 E-value=19 Score=28.87 Aligned_cols=27 Identities=33% Similarity=0.323 Sum_probs=21.7
Q ss_pred HhhHhhHHHHHhHHHHHHHHHHHhhcC
Q psy15840 98 RRLAANARERRRMSGLNEAFDRLREVI 124 (161)
Q Consensus 98 rR~~aN~RER~R~~~lN~AF~~LR~~l 124 (161)
.|.+...|||+|..---.-|..||.+=
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~G 37 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHG 37 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556799999988889999999864
No 23
>KOG4395|consensus
Probab=42.24 E-value=8.1 Score=33.77 Aligned_cols=49 Identities=37% Similarity=0.528 Sum_probs=35.7
Q ss_pred HHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15840 94 VMKKRRLAANARERRRMSGLNEAFDRLREVIP------CIGIEHKLSKFETLQMAQTYIHSLRDLL 153 (161)
Q Consensus 94 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP------~~~~~~kLSKietLr~Ai~YI~~L~~~L 153 (161)
....+|..+|. ++++| |.+|| .-+...+|.|+-+++.+..||..++.-.
T Consensus 78 ~~~~l~~~~n~-----a~e~~------~h~v~A~~~e~a~p~~~~l~~~~~~~~~k~~~~~~~~~~ 132 (285)
T KOG4395|consen 78 LSKYLRKTANA-----AREIN------RHCVPAIKGEDAAPTNEKLTKITTLRLAKKYITMLTDSI 132 (285)
T ss_pred hHHhhhhhhhH-----HHHHh------hhccccccccccCchhhhhhcccccccccCCCcCCcccc
Confidence 34556677774 44444 78888 3346779999999999999999887433
No 24
>PLN02705 beta-amylase
Probab=35.49 E-value=2.5e+02 Score=27.72 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=22.0
Q ss_pred HhhHhhHHHHHhHHHHHHHHHHHhhcCC
Q psy15840 98 RRLAANARERRRMSGLNEAFDRLREVIP 125 (161)
Q Consensus 98 rR~~aN~RER~R~~~lN~AF~~LR~~lP 125 (161)
.|.+...|||+|+.---.-|..||.+=-
T Consensus 84 e~e~~~~rer~rrai~~ki~aglr~~g~ 111 (681)
T PLN02705 84 EKERTKLRERHRRAITSRMLAGLRQYGN 111 (681)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444567999999999999999998643
No 25
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=30.65 E-value=2e+02 Score=20.37 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=18.0
Q ss_pred HHHHHhHHHHHHHHHHHhhcCC
Q psy15840 104 ARERRRMSGLNEAFDRLREVIP 125 (161)
Q Consensus 104 ~RER~R~~~lN~AF~~LR~~lP 125 (161)
.+|..-+++||.+|+.+-..|=
T Consensus 4 ~kEL~~Lr~IN~~ie~~~~~L~ 25 (78)
T PF08651_consen 4 EKELEQLRKINPVIEGLIETLR 25 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999998866553
No 26
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=25.35 E-value=30 Score=22.90 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15840 114 NEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRD 151 (161)
Q Consensus 114 N~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~ 151 (161)
++|.+.||..|-.-+-=..-.+|.+|..|.+-|++=|+
T Consensus 10 ~DAWe~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~Wqe 47 (49)
T PF04839_consen 10 EDAWEQLKNELESKPWISEKERIELLNQATEIINYWQE 47 (49)
T ss_dssp S-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 36777777766433322355688999999998887664
No 27
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.71 E-value=97 Score=23.06 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy15840 136 FETLQMAQTYIHSLRDLLTSA 156 (161)
Q Consensus 136 ietLr~Ai~YI~~L~~~L~~~ 156 (161)
+.+++++|+|+.+.++.|...
T Consensus 61 frLaQl~ieYLl~~q~~L~~~ 81 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQEYLSSQ 81 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999988654
No 28
>PRK02724 hypothetical protein; Provisional
Probab=23.40 E-value=82 Score=23.91 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15840 114 NEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRD 151 (161)
Q Consensus 114 N~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~ 151 (161)
++|-+.||..|-.-+-=.+-.+|.+|..|.+-|++=|+
T Consensus 44 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe 81 (104)
T PRK02724 44 NDAWEQLKTELESKHWITENERVEVLNKATEVINYWQE 81 (104)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 37888888887654433455689999999999998887
No 29
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=23.03 E-value=72 Score=19.46 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHhh
Q psy15840 106 ERRRMSGLNEAFDRLRE 122 (161)
Q Consensus 106 ER~R~~~lN~AF~~LR~ 122 (161)
-..++..||.||+.|.+
T Consensus 39 ~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 39 AEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44579999999999863
No 30
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=21.85 E-value=78 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHhh
Q psy15840 108 RRMSGLNEAFDRLRE 122 (161)
Q Consensus 108 ~R~~~lN~AF~~LR~ 122 (161)
.++..||.||+.|.+
T Consensus 43 ~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 43 EKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHHHHHHHHHcC
Confidence 478999999999976
No 31
>KOG1748|consensus
Probab=21.79 E-value=41 Score=26.48 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q psy15840 129 IEHKLSKFETLQMAQTYIHSLRD 151 (161)
Q Consensus 129 ~~~kLSKietLr~Ai~YI~~L~~ 151 (161)
++++.-||.|.+.|++||..+.+
T Consensus 106 pd~dAdki~t~~da~~yI~~~~d 128 (131)
T KOG1748|consen 106 PDEDADKIKTVRDAADYIADKPD 128 (131)
T ss_pred CcchhhhhCCHHHHHHHHHhccc
Confidence 57888999999999999987643
No 32
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.20 E-value=1.6e+02 Score=22.30 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=15.8
Q ss_pred HHhHHHHHHHHHHHhhcCC
Q psy15840 107 RRRMSGLNEAFDRLREVIP 125 (161)
Q Consensus 107 R~R~~~lN~AF~~LR~~lP 125 (161)
+..+..||.+|++||..|-
T Consensus 78 ~~~v~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 78 RSSVESLQSSYERLRSEVI 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578999999999988774
No 33
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=20.07 E-value=1.1e+02 Score=23.13 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15840 114 NEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDL 152 (161)
Q Consensus 114 N~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~ 152 (161)
++|-+.||..|-.-+-=.+-.+|.+|..|.+-|++=|+-
T Consensus 39 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~Wqe~ 77 (99)
T CHL00163 39 TDAWELLKLELESKPWISEDERIEILNKTTEIINYWQEN 77 (99)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 377888888775544334556889999999999888873
Done!