Query psy15840
Match_columns 161
No_of_seqs 166 out of 704
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:43:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 5.8E-25 2E-29 148.8 8.1 59 98-156 2-60 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 1.7E-23 5.8E-28 144.8 7.8 61 94-155 8-68 (68)
3 2lfh_A DNA-binding protein inh 99.8 3.6E-22 1.2E-26 138.4 2.5 50 102-151 18-67 (68)
4 4aya_A DNA-binding protein inh 99.8 6.9E-21 2.3E-25 140.0 6.8 60 98-157 25-84 (97)
5 3u5v_A Protein MAX, transcript 99.7 2.7E-18 9.3E-23 120.9 4.9 63 96-158 3-66 (76)
6 1hlo_A Protein (transcription 99.6 6E-16 2E-20 108.8 7.6 60 95-155 9-68 (80)
7 1nkp_A C-MYC, MYC proto-oncoge 99.6 1.8E-15 6.1E-20 108.8 7.7 59 96-154 4-62 (88)
8 1nkp_B MAX protein, MYC proto- 99.6 2.2E-15 7.7E-20 106.3 7.5 56 98-154 2-57 (83)
9 1nlw_A MAD protein, MAX dimeri 99.5 1.4E-14 4.7E-19 102.6 7.3 56 99-154 2-57 (80)
10 1am9_A Srebp-1A, protein (ster 99.4 6.5E-13 2.2E-17 94.0 7.9 58 96-155 4-61 (82)
11 1an4_A Protein (upstream stimu 99.4 1.1E-13 3.7E-18 93.5 1.7 55 98-152 5-62 (65)
12 4h10_B Circadian locomoter out 99.3 1.3E-11 4.5E-16 85.9 8.6 57 96-154 6-62 (71)
13 1a0a_A BHLH, protein (phosphat 99.3 6.4E-13 2.2E-17 90.2 1.2 56 98-153 2-61 (63)
14 4h10_A ARYL hydrocarbon recept 99.2 1.1E-11 3.6E-16 86.6 5.3 57 95-151 6-63 (73)
15 4ati_A MITF, microphthalmia-as 99.2 2.8E-11 9.7E-16 91.0 7.2 60 96-155 25-85 (118)
16 4f3l_A Mclock, circadian locom 98.7 2.7E-08 9.2E-13 84.5 6.5 58 95-154 9-66 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.4 1.9E-07 6.5E-12 80.3 4.7 57 95-151 10-67 (387)
18 4ath_A MITF, microphthalmia-as 97.7 6E-05 2E-09 53.7 6.0 43 111-153 5-48 (83)
19 3muj_A Transcription factor CO 92.3 0.24 8.2E-06 38.1 5.5 40 111-150 94-134 (138)
20 3mlp_A Transcription factor CO 65.4 2 7E-05 37.8 1.2 40 111-150 320-360 (402)
21 1pd7_B MAD1; PAH2, SIN3, eukar 35.7 25 0.00087 19.6 2.1 20 132-151 1-20 (26)
22 1iur_A KIAA0730 protein; DNAJ 25.9 53 0.0018 22.3 3.0 19 108-126 58-76 (88)
23 1faf_A Large T antigen; J doma 23.4 47 0.0016 21.9 2.3 17 108-124 50-66 (79)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.91 E-value=5.8e-25 Score=148.75 Aligned_cols=59 Identities=56% Similarity=0.908 Sum_probs=56.2
Q ss_pred HhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy15840 98 RRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTSA 156 (161)
Q Consensus 98 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~~ 156 (161)
||.+||+|||+||++||+||+.||.+||+.+.++|||||+||+.||+||.+|+++|+++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~g 60 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSG 60 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999999999999999999999999999999753
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.89 E-value=1.7e-23 Score=144.82 Aligned_cols=61 Identities=41% Similarity=0.569 Sum_probs=56.4
Q ss_pred HHHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy15840 94 VMKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTS 155 (161)
Q Consensus 94 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~ 155 (161)
....+|.+||+|||+||+.||+||+.||.+||..+ ++|||||+||+.||+||.+|+++|++
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 35678999999999999999999999999999755 79999999999999999999999864
No 3
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=3.6e-22 Score=138.36 Aligned_cols=50 Identities=30% Similarity=0.454 Sum_probs=48.2
Q ss_pred hhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15840 102 ANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRD 151 (161)
Q Consensus 102 aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~ 151 (161)
||+|||+||+.||+||+.||.+||+.+.++||||||||++||+||.+|+.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999999999999999999999999985
No 4
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.83 E-value=6.9e-21 Score=139.98 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=51.7
Q ss_pred HhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy15840 98 RRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTSAN 157 (161)
Q Consensus 98 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~~~ 157 (161)
|+..+..+||.||+.||+||+.||.+||+.+.++|||||||||+||+||.+|+++|++.+
T Consensus 25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 25 RSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333445677999999999999999999999999999999999999999999999999875
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.72 E-value=2.7e-18 Score=120.89 Aligned_cols=63 Identities=29% Similarity=0.339 Sum_probs=52.2
Q ss_pred HHHhhHhhHHHHHhHHHHHHHHHHHhhcCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccC
Q psy15840 96 KKRRLAANARERRRMSGLNEAFDRLREVIP-CIGIEHKLSKFETLQMAQTYIHSLRDLLTSANS 158 (161)
Q Consensus 96 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP-~~~~~~kLSKietLr~Ai~YI~~L~~~L~~~~~ 158 (161)
..||.++|++||+|+..||++|+.||.+|| ..+.++++||++||+.||+||..|++.|.+.+.
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 358999999999999999999999999999 456666779999999999999999999987654
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.63 E-value=6e-16 Score=108.79 Aligned_cols=60 Identities=28% Similarity=0.456 Sum_probs=54.4
Q ss_pred HHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy15840 95 MKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTS 155 (161)
Q Consensus 95 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~ 155 (161)
...+|..||.+||+|+..||.+|+.||.+||..+ +.|+||++||+.||+||.+|+..++.
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~ 68 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999755 46899999999999999999987764
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=1.8e-15 Score=108.76 Aligned_cols=59 Identities=31% Similarity=0.372 Sum_probs=54.7
Q ss_pred HHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 96 KKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 96 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
..+|..||+.||+|+..||++|+.||.+||..+.+.|+||+.||+.||+||.+|+....
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999988878999999999999999999997643
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.59 E-value=2.2e-15 Score=106.28 Aligned_cols=56 Identities=30% Similarity=0.497 Sum_probs=51.4
Q ss_pred HhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 98 RRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 98 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
+|..||.+||+|+..||.+|+.||.+||..+ +.|+||++||+.||+||.+|+...+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~ 57 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNH 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999755 5789999999999999999997554
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=1.4e-14 Score=102.59 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=52.6
Q ss_pred hhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 99 RLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 99 R~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
|..||+.||+|+..||.+|+.||..||..+.+.|+||+.||+.|++||..|++-..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999998888999999999999999999987654
No 10
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.41 E-value=6.5e-13 Score=93.99 Aligned_cols=58 Identities=31% Similarity=0.372 Sum_probs=53.1
Q ss_pred HHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy15840 96 KKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLTS 155 (161)
Q Consensus 96 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~~ 155 (161)
..+|..||..||+|+..||++|..|+..||.. +.|++|+.||..||+||.+|+..++.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999963 57999999999999999999987654
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=1.1e-13 Score=93.54 Aligned_cols=55 Identities=36% Similarity=0.432 Sum_probs=49.4
Q ss_pred HhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q psy15840 98 RRLAANARERRRMSGLNEAFDRLREVIPCIGIE---HKLSKFETLQMAQTYIHSLRDL 152 (161)
Q Consensus 98 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~---~kLSKietLr~Ai~YI~~L~~~ 152 (161)
+|..||..||+|+..||.+|..|+.+||..... .|++|+.||..||+||.+|+.-
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999976543 4899999999999999999863
No 12
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=85.87 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=52.0
Q ss_pred HHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 96 KKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 96 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
+.+|..+|..||+|...||..|..|+..||. .+.|+.|..||+.||+||..|+..+.
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 5688899999999999999999999999994 35799999999999999999998764
No 13
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.27 E-value=6.4e-13 Score=90.18 Aligned_cols=56 Identities=27% Similarity=0.291 Sum_probs=49.5
Q ss_pred HhhHhhHHHHHhHHHHHHHHHHHhhcCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15840 98 RRLAANARERRRMSGLNEAFDRLREVIPCIG----IEHKLSKFETLQMAQTYIHSLRDLL 153 (161)
Q Consensus 98 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~----~~~kLSKietLr~Ai~YI~~L~~~L 153 (161)
+|..|+.-||.|+..||.+|+.|+.+||... .+.++||..||.+||+||.+|++.+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999999999432 2579999999999999999998744
No 14
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=86.56 Aligned_cols=57 Identities=32% Similarity=0.496 Sum_probs=51.1
Q ss_pred HHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCC-CCCCCCCHHHHHHHHHHHHHHHHH
Q psy15840 95 MKKRRLAANARERRRMSGLNEAFDRLREVIPCI-GIEHKLSKFETLQMAQTYIHSLRD 151 (161)
Q Consensus 95 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~-~~~~kLSKietLr~Ai~YI~~L~~ 151 (161)
.+.+|..++..||+|+..||.+|+.|+..||.. ....|+.|+.||++||+||..|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 456889999999999999999999999999953 345799999999999999999874
No 15
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.20 E-value=2.8e-11 Score=90.95 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=47.5
Q ss_pred HHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy15840 96 KKRRLAANARERRRMSGLNEAFDRLREVIPCIG-IEHKLSKFETLQMAQTYIHSLRDLLTS 155 (161)
Q Consensus 96 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~-~~~kLSKietLr~Ai~YI~~L~~~L~~ 155 (161)
+.+|..||.-||+|+..||+.|..|+..||... .+.|++|..||..||+||.+|+...+.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~ 85 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR 85 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999654 367999999999999999999876543
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.67 E-value=2.7e-08 Score=84.49 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=44.1
Q ss_pred HHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15840 95 MKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLLT 154 (161)
Q Consensus 95 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~~~~kLSKietLr~Ai~YI~~L~~~L~ 154 (161)
.+.+|..+|..||+|+..||..|..|+..|| ....||.|+.||++||.||..|+.+-.
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 3457888999999999999999999999999 345799999999999999999987643
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.40 E-value=1.9e-07 Score=80.31 Aligned_cols=57 Identities=32% Similarity=0.496 Sum_probs=49.9
Q ss_pred HHHHhhHhhHHHHHhHHHHHHHHHHHhhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy15840 95 MKKRRLAANARERRRMSGLNEAFDRLREVIPCIG-IEHKLSKFETLQMAQTYIHSLRD 151 (161)
Q Consensus 95 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~~-~~~kLSKietLr~Ai~YI~~L~~ 151 (161)
.+.+|..+|.-||+|+..||..|..|+.+||... ...||.|..||++||.||..|+.
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3567889999999999999999999999999532 45799999999999999998873
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.74 E-value=6e-05 Score=53.73 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15840 111 SGLNEAFDRLREVIPCI-GIEHKLSKFETLQMAQTYIHSLRDLL 153 (161)
Q Consensus 111 ~~lN~AF~~LR~~lP~~-~~~~kLSKietLr~Ai~YI~~L~~~L 153 (161)
-.||+.+..|...||.. .++.|.+|-.||+.|++||.+|++-.
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~ 48 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQ 48 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHH
Confidence 46999999999999953 45779999999999999999997643
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=92.33 E-value=0.24 Score=38.07 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy15840 111 SGLNEAFDRLREVIPCIG-IEHKLSKFETLQMAQTYIHSLR 150 (161)
Q Consensus 111 ~~lN~AF~~LR~~lP~~~-~~~kLSKietLr~Ai~YI~~L~ 150 (161)
-.|+=+|++|.+.+|-.+ ...+|.|--+|+.|.++...|-
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 468899999999999544 4579999999999999988774
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=65.39 E-value=2 Score=37.77 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy15840 111 SGLNEAFDRLREVIPCIG-IEHKLSKFETLQMAQTYIHSLR 150 (161)
Q Consensus 111 ~~lN~AF~~LR~~lP~~~-~~~kLSKietLr~Ai~YI~~L~ 150 (161)
-.|+=+|++|.+.||-.| ...+|.|--+|+.|.+++..|-
T Consensus 320 PtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ealy 360 (402)
T 3mlp_A 320 PTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALY 360 (402)
T ss_dssp CTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHHT
T ss_pred CccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHhc
Confidence 457789999999999544 4579999999999999998773
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=35.75 E-value=25 Score=19.56 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy15840 132 KLSKFETLQMAQTYIHSLRD 151 (161)
Q Consensus 132 kLSKietLr~Ai~YI~~L~~ 151 (161)
+|.+|++|-.|.+|+.....
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 46689999999999987765
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=25.92 E-value=53 Score=22.32 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHhhcCCC
Q psy15840 108 RRMSGLNEAFDRLREVIPC 126 (161)
Q Consensus 108 ~R~~~lN~AF~~LR~~lP~ 126 (161)
.+.+.||+||+.|.+..+-
T Consensus 58 ~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 58 EVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4799999999999988763
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=23.39 E-value=47 Score=21.88 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHhhcC
Q psy15840 108 RRMSGLNEAFDRLREVI 124 (161)
Q Consensus 108 ~R~~~lN~AF~~LR~~l 124 (161)
.+++.||+||+.|...+
T Consensus 50 ~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 50 ALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 36899999999998744
Done!