RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15840
         (161 letters)



>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 58.0 bits (140), Expect = 1e-12
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 95  MKKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLL 153
           M  +R   N  ER+R + L  +F  LR+ IP +    K  K   L+ A  YI S++   
Sbjct: 3   MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 56.3 bits (136), Expect = 3e-12
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 96  KKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEH---KLSKFETLQMAQTYIHSLR 150
           +KRR   N  ERRR   +N    +L ++IP   +E      SK   L  A  YI  LR
Sbjct: 3   EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60


>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 68

 Score = 56.0 bits (135), Expect = 5e-12
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 96  KKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLL 153
             RR AA  RERRR+S +NEAF+ L+        +  L K E L+ A  YI  L+ LL
Sbjct: 10  ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQR-LPKVEILRNAIRYIEGLQALL 66


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 79

 Score = 53.0 bits (127), Expect = 1e-10
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 99  RLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLL 153
           R   N  E+ R + L  + ++L+ ++P      + +    L  A+ +I  L D  
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSD 56


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 51.4 bits (123), Expect = 2e-10
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 98  RRLAANARERRRMSGLNEAFDRLREVIP----CIGIEHKLSKFETLQMAQTYIHSLRDLL 153
           +R +    E+ R + L  A   L  +IP       +    SK  T++ A  YI  L+   
Sbjct: 2   KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61

Query: 154 TS 155
           ++
Sbjct: 62  ST 63


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 83

 Score = 49.9 bits (119), Expect = 1e-09
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 98  RRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRDLL 153
           +R   NA ER+R   + ++F  LR+ +P +  E K S+ + L  A  YI  +R   
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKN 56


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 45.3 bits (107), Expect = 7e-08
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 96  KKRRLAANARERRRMSGLNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLRD 151
            ++R A NA E+R  S +N+    L++++   G E KL+K   L+ A  YI  L+ 
Sbjct: 4   GEKRTAHNAIEKRYRSSINDKIIELKDLVV--GTEAKLNKSAVLRKAIDYIRFLQH 57


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 29.7 bits (67), Expect = 0.032
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 113 LNEAFDRLREVIPCIGIEHKLSKFETLQMAQTYIHSLR 150
           +N+    L++++   G + K+ K   L+ A  YI  L+
Sbjct: 4   INDKIIELKDLVM--GTDAKMHKSGVLRKAIDYIKYLQ 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 592,749
Number of extensions: 26920
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 12
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.6 bits)