RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15843
(517 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 337 bits (866), Expect = e-111
Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 21/267 (7%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTL 272
+ A G + + + +AV + I + + FL + + + L
Sbjct: 146 KAAFGMETSMLLGAQKPLSQAVKLMLEGITASRNTL---AKFLPGKRKQLREVRESIRFL 202
Query: 273 HSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEV 332
+ R+ LK + L +++A E DE + +
Sbjct: 203 RQVGRDWVQRRREALKRGE-------------EVPADILTQILKAEEG-AQDDEGLLDNF 248
Query: 333 DTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLE 392
TF GH+T++ + +T++ L EI ++ E+ + + L ++YL
Sbjct: 249 VTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEV-IGS-KRYLDFEDLGRLQYLS 306
Query: 393 ACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPD 452
+KE+LRLYP R L E+ + +P +T ++ Y + R F P ++PD
Sbjct: 307 QVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPD 366
Query: 453 RFLSENVAGRNPYAYIPFSAGPRNCIG 479
RF + + Y PFS G R+CIG
Sbjct: 367 RFGPGAP--KPRFTYFPFSLGHRSCIG 391
Score = 120 bits (304), Expect = 7e-30
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 32 LILRPQDGIRPILNNSRTIHKSSDYCYIEP-----WLGNGLLTSA-GHIWHQRRKILTPA 85
++ P + ++ L +++ S Y ++ G GL++ WH++R+++ A
Sbjct: 38 IVTSP-ESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHKQRRVIDLA 96
Query: 86 FHFRILEDFVEVFQEQSEVLVRRL-GEVGVGESINVFPYVTLCTLDI 131
F L +E F E++E LV L + +++ +T +DI
Sbjct: 97 FSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDI 143
Score = 54.9 bits (133), Expect = 3e-08
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGIR 41
+E KV++A +L+R V + L + L+P D +
Sbjct: 396 QMEVKVVMAKLLQRLEFRLVPGQR-FGLQEQATLKPLDPVL 435
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 321 bits (826), Expect = e-105
Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 28/267 (10%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTL 272
+ ++ V + Q ++PD F++S LYK +++ + L
Sbjct: 201 TLFLRIPLDES-----AIVVKIQGYFDAWQAL----LIKPDIFFKISWLYKKYEKSVKDL 251
Query: 273 HSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEV 332
+I E++ + + E +++ F LI A +R +L+ EN+ + +
Sbjct: 252 KDAIEVLIAEKRRRIS-----------TEEKLEECMDFATELILAEKRGDLTRENVNQCI 300
Query: 333 DTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLE 392
+ DT S ++ + L L+ + ++ + +EI T + + +K +E
Sbjct: 301 LEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEI-QTVIG--ERDIKIDDIQKLKVME 357
Query: 393 ACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPD 452
I E++R P V + RK ED + Y + + T +I+ + +HR E FP+P + +
Sbjct: 358 NFIYESMRYQPVVDLVMRKALEDDVIDGYPVKKGTNIILNIGRMHR-LEFFPKPNEFTLE 416
Query: 453 RFLSENVAGRNPYAYIPFSAGPRNCIG 479
F + PF GPR C G
Sbjct: 417 NFAKN----VPYRYFQPFGFGPRGCAG 439
Score = 109 bits (274), Expect = 8e-26
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 4/98 (4%)
Query: 38 DGIRPILNNSRTIHKSSD---YCYIEPWLGNGLLTSAGHIWHQRRKILTPAFHFRILEDF 94
+ I+ ++ + I + + +W R A L
Sbjct: 101 SSMFHIMKHNHYSSRFGSKLGLQCIGMHEKGIIFNNNPELWKTTRPFFMKALSGPGLVRM 160
Query: 95 VEVFQEQSEVLVRRLGE-VGVGESINVFPYVTLCTLDI 131
V V E + + RL E ++V + LD
Sbjct: 161 VTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDT 198
Score = 52.0 bits (125), Expect = 3e-07
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 1 MLEEKVILANILRRFRVEAVDRR--EDLTLLGELILRPQDGIRPI 43
M+ K IL +LRRF V+ + + E + + +L L P + +
Sbjct: 444 MVMMKAILVTLLRRFHVKTLQGQCVESIQKIHDLSLHPDETKNML 488
Score = 35.8 bits (83), Expect = 0.030
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 165 TIALLLTLGYFVVRRIKQSRLVKLINRIPGPTSLPVLGNSIECNVDNEE 213
T+ +LL G F++ + + IPGP +G I
Sbjct: 25 TMPVLLLTGLFLLVWNY-----EGTSSIPGPGYCMGIGPLISHGRFLWM 68
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 277 bits (710), Expect = 5e-88
Identities = 59/273 (21%), Positives = 109/273 (39%), Gaps = 30/273 (10%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTL 272
+ + + A+ + + +R L + L L
Sbjct: 168 RCLLRGQYMDERAE--RLCVALATVFRGMYRRMVVPLGPLYRLPL--PANRRFNDALADL 223
Query: 273 HSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASER--HNLSDENIRE 330
H ++I ER+A + K L L+EA + + ++ I +
Sbjct: 224 HLLVDEIIAERRASGQ-----------------KPDDLLTALLEAKDDNGDPIGEQEIHD 266
Query: 331 EVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKAL--HKPFTTRSLNSM 388
+V + G +T ++ I W L L + E +++ +E+ +A+ +P + +
Sbjct: 267 QVVAILTPGSETIASTIMWLLQALADHPEHADRIRDEV-----EAVTGGRPVAFEDVRKL 321
Query: 389 KYLEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPEL 448
++ I EA+RL P+V + R+ + L Y +P ++I Y + RDP+ +
Sbjct: 322 RHTGNVIVEAMRLRPAVWVLTRRAVAESELGGYRIPAGADIIYSPYAIQRDPKSYDDNLE 381
Query: 449 YDPDRFLSENVAGRNPYAYIPFSAGPRNCIGES 481
+DPDR+L E A YA PFSAG R C +
Sbjct: 382 FDPDRWLPERAANVPKYAMKPFSAGKRKCPSDH 414
Score = 108 bits (273), Expect = 1e-25
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 38 DGIRPILNNSRTIHKSSDYCYIEPWLGN-GLLTSAGHIWHQRRKILTPAFHFRILEDFVE 96
+ + N + +E LG G+ T+ G + ++R+ + PAF + +
Sbjct: 74 ELTGALALNPDYHIAGPLWESLEGLLGKEGVATANGPLHRRQRRTIQPAFRLDAIPAYGP 133
Query: 97 VFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDI 131
+ +E++ L R G++++ + +
Sbjct: 134 IMEEEAHALTERWQP---GKTVDATSESFRVAVRV 165
Score = 50.0 bits (120), Expect = 1e-06
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGI 40
M + +I A + ++R E V + + LRP D +
Sbjct: 417 MAQLTLITAALATKYRFEQVAGSN-DAVRVGITLRPHDLL 455
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 276 bits (709), Expect = 8e-88
Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 33/274 (12%)
Query: 213 ETAMGRKINAQ-DDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNT 271
+ N+ D ++ ++ + + + Q +
Sbjct: 155 LCGFNYRFNSFYRDQPHPFITSMVRALDEAMNK---LQRANPDDPAYDENKRQFQEDIKV 211
Query: 272 LHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHN---LSDENI 328
++ K+I +RKA + + L ++ + L DENI
Sbjct: 212 MNDLVDKIIADRKASGEQSDD-----------------LLTHMLNGKDPETGEPLDDENI 254
Query: 329 REEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKAL-HKPFTTRSLNS 387
R ++ TF+ GH+TTS + + L L N + K EE + L + + +
Sbjct: 255 RYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAA----RVLVDPVPSYKQVKQ 310
Query: 388 MKYLEACIKEALRLYPSVPFIARKLSEDVPLPD-YVLPRDTEVIIVVYNLHRDPEVFP-R 445
+KY+ + EALRL+P+ P + ED L Y L + E+++++ LHRD ++
Sbjct: 311 LKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDD 370
Query: 446 PELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIG 479
E + P+RF EN + +A+ PF G R CIG
Sbjct: 371 VEEFRPERF--ENPSAIPQHAFKPFGNGQRACIG 402
Score = 113 bits (286), Expect = 2e-27
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 38 DGIRPILNNSR-TIHKSSDYCYIEPWLGNGLLTSA--GHIWHQRRKILTPAFHFRILEDF 94
I+ + SR + S ++ + G+GL TS W + IL P+F + ++ +
Sbjct: 56 RLIKEACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGY 115
Query: 95 VEVFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDI 131
+ + + LV++ + E I V +T TLD
Sbjct: 116 HAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDT 152
Score = 46.1 bits (110), Expect = 2e-05
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDG 39
+ E ++L +L+ F E E L + L L+P+
Sbjct: 407 LHEATLVLGMMLKHFDFEDHTNYE-LDIKETLTLKPEGF 444
Score = 28.0 bits (63), Expect = 8.2
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 189 INRIPGPTSLPVLGNSIECNVDN 211
I +P P + L N N D
Sbjct: 2 IKEMPQPKTFGELKNLPLLNTDK 24
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 268 bits (688), Expect = 8e-85
Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 27/270 (10%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTL 272
G++I +Q + E V +Y + L P +L ++ R +
Sbjct: 160 HCLHGKEIRSQLN---EKVAQLYAD--LDGGFSHAAWLLPGWLP--LPSFRRRDRAHREI 212
Query: 273 HSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASER--HNLSDENIRE 330
YK I +R+ ++ +D L L++A+ + L+D+ +
Sbjct: 213 KDIFYKAIQKRRQS-----------QEKIDD------ILQTLLDATYKDGRPLTDDEVAG 255
Query: 331 EVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKY 390
+ + G T+S W L ++ +Q K Y E T P T L +
Sbjct: 256 MLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLE-QKTVCGENLPPLTYDQLKDLNL 314
Query: 391 LEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYD 450
L+ CIKE LRL P + + R + Y +P +V + R + + ++
Sbjct: 315 LDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFN 374
Query: 451 PDRFLSENVAGRNPYAYIPFSAGPRNCIGE 480
PDR+L +N A +AY+PF AG CIGE
Sbjct: 375 PDRYLQDNPASGEKFAYVPFGAGRHRCIGE 404
Score = 94.3 bits (235), Expect = 7e-21
Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 38 DGIRPILNNS-RTIHKSSDYCY-IEPWLGNGLLTSA-GHIWHQRRKILTPAFHFRILEDF 94
D + N+ ++ Y P G G+ ++ +++K+L + +
Sbjct: 64 DAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQH 123
Query: 95 VEVFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDI 131
V + +++++ GE NVF ++ +
Sbjct: 124 VSIIEKETKEYFESWGE---SGEKNVFEALSELIILT 157
Score = 45.4 bits (108), Expect = 3e-05
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGI 40
++ K I + +LR + + +D +I P++ +
Sbjct: 408 YVQIKTIWSTMLRLYEFDLIDGYFPTVNYTTMIHTPENPV 447
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 268 bits (687), Expect = 9e-85
Identities = 54/272 (19%), Positives = 100/272 (36%), Gaps = 31/272 (11%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTL 272
+ G + + D+ + + + ++ S + P L L
Sbjct: 154 QCLFGEDLRKRLDA-RRFAQLLAKMESSLIPAA---VFLPILLKLPLPQSARCHEARTEL 209
Query: 273 HSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASER--HNLSDENIRE 330
++I RK + + L L+ A R +S +
Sbjct: 210 QKILSEIIIARKEEEVNKD-------------SSTSDLLSGLLSAVYRDGTPMSLHEVCG 256
Query: 331 EVDTFMFEGHDTTSAAICWTLLLLGSNQEIQN--KVYEEILVTSFKALHKPFTTRSLNSM 388
+ MF G T+S W++L L +++ + +EI + + ++ M
Sbjct: 257 MIVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIE----EFPAQLNYNNVMDEM 312
Query: 389 KYLEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPEL 448
+ E C +E++R P + + RK+ DV + YV+P+ + H D E FP P
Sbjct: 313 PFAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKGDIIACSPLLSHHDEEAFPEPRR 372
Query: 449 YDPDRFLSENVAGRNPYAYIPFSAGPRNCIGE 480
+DP+R + A+I F AG CIG+
Sbjct: 373 WDPERDE------KVEGAFIGFGAGVHKCIGQ 398
Score = 100 bits (251), Expect = 6e-23
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 3/96 (3%)
Query: 38 DGIRPILNNS-RTIHKSSDYCYIEPWLGNGLLTSA-GHIWHQRRKILTPAFHFRILEDFV 95
+ Y ++ P G G+ +A ++ L ++FV
Sbjct: 57 HEHSRFFLPRNEVLSPREVYSFMVPVFGEGVAYAAPYPRMREQLNFLAEELTIAKFQNFV 116
Query: 96 EVFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDI 131
Q + + + GE IN+ + ++
Sbjct: 117 PAIQHEVRKFMAANWDKDEGE-INLLEDCSTMIINT 151
Score = 43.0 bits (102), Expect = 2e-04
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGIRPI 43
+L+ K ILA R + + + +++ P +
Sbjct: 402 LLQVKTILATAFRSYDFQLLRDEVPDPDYHTMVVGPTASQCRV 444
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 253 bits (649), Expect = 8e-79
Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 27/270 (10%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRL--SSLYKNHQRCLN 270
E G ++ ++ A+ + S K + P L + + +++ H +
Sbjct: 189 EKRFGLLQKETEEEALTFITAIKTMMSTFGKMM----VTPVELHKRLNTKVWQAHTLAWD 244
Query: 271 TLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIRE 330
T+ I+ R + D L + ++ +LS + +
Sbjct: 245 TIFKSVKPCIDNRLQRYSQQ------------------PGADFLCDIYQQDHLSKKELYA 286
Query: 331 EVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKY 390
V +TT+ ++ W L L N + Q ++ +E+ S ++ L +M Y
Sbjct: 287 AVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQ--SVLPDNQTPRAEDLRNMPY 344
Query: 391 LEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYD 450
L+AC+KE++RL PSVPF R L + L +Y LP+ T + + L + F +
Sbjct: 345 LKACLKESMRLTPSVPFTTRTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFR 404
Query: 451 PDRFLSENVAGRNPYAYIPFSAGPRNCIGE 480
P+R+L + NP+A++PF G R CIG
Sbjct: 405 PERWLQKEKK-INPFAHLPFGIGKRMCIGR 433
Score = 62.3 bits (152), Expect = 2e-10
Identities = 12/107 (11%), Positives = 28/107 (26%), Gaps = 9/107 (8%)
Query: 33 ILRPQDGIRPILNN-----SRTIHKSSDYCYIEPWLGNGLLTSAGHIWHQRRKILTPAF- 86
+ P + + R K GL+ G W + R
Sbjct: 77 LGSPSL-LEALYRTESAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQRVRSAFQKKLM 135
Query: 87 HFRILEDFVEVFQEQSEVLVRRLGEVGV--GESINVFPYVTLCTLDI 131
+ + E + R+ E+ G +++ + + +
Sbjct: 136 KPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFES 182
Score = 41.5 bits (98), Expect = 5e-04
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGIR 41
L+ + L I++++ + A D E + +L IL P +
Sbjct: 437 ELQLHLALCWIIQKYDIVATD-NEPVEMLHLGILVPSRELP 476
Score = 31.9 bits (73), Expect = 0.59
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 182 QSRLVKLINRIPGPTSLPVLGN 203
+ + +PGPT+ P+LG+
Sbjct: 16 TDGETRNVTDLPGPTNWPLLGS 37
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 248 bits (635), Expect = 1e-76
Identities = 62/269 (23%), Positives = 112/269 (41%), Gaps = 18/269 (6%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRL--SSLYKNHQRCLN 270
G + ++ + + + + + P LFRL + +K+H +
Sbjct: 172 NVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWD 231
Query: 271 TLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIRE 330
+ S + +L+ + + +L +S E+I+
Sbjct: 232 VIFSKADIYTQNFYWELRQKG-------------SVHHDYRGILYRLLGDSKMSFEDIKA 278
Query: 331 EVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKY 390
V + G DTTS + W L + N ++Q+ + E+L + + + L +
Sbjct: 279 NVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVL--AARHQAQGDMATMLQLVPL 336
Query: 391 LEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYD 450
L+A IKE LRL+P + R L D+ L DY++P T V + +Y L R+P F PE +D
Sbjct: 337 LKASIKETLRLHPISVTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFD 396
Query: 451 PDRFLSENVAGRNPYAYIPFSAGPRNCIG 479
P R+LS++ + + F G R C+G
Sbjct: 397 PTRWLSKDKNI-TYFRNLGFGWGVRQCLG 424
Score = 58.5 bits (142), Expect = 2e-09
Identities = 25/176 (14%), Positives = 56/176 (31%), Gaps = 24/176 (13%)
Query: 33 ILRPQDGIRPILNNSRTIHKSSDYCYIEPWLG--------NGLLTSAGHIWHQRRKILTP 84
++ P+D + + ++ + + I PW+ G+L W + R L
Sbjct: 61 VIDPED-VALLF---KSEGPNPERFLIPPWVAYHQYYQRPIGVLLKKSAAWKKDRVALNQ 116
Query: 85 -AFHFRILEDFVEVFQEQSEVLVRRLGEV-----GVGESINVFPYVTLCTLDI--KLQWE 136
++F+ + S V L S ++ + + + +
Sbjct: 117 EVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIFG 176
Query: 137 EK-SMLRATVTQNMSKLSMSIQSVIREFRTIALLLTLGYFVVRRIKQSRLVKLINR 191
E+ ML V + I ++ + F T +L L + R + +
Sbjct: 177 ERQGMLEEVVNPEAQRF---IDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAA 229
Score = 41.2 bits (97), Expect = 8e-04
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGIR 41
LE + L N+L FRVE + D+ LIL P+ I
Sbjct: 429 ELEMTIFLINMLENFRVE-IQHLSDVGTTFNLILMPEKPIS 468
Score = 33.1 bits (76), Expect = 0.25
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 183 SRLVKLINRIPGPTSLPVLGN 203
+R + N IP P L
Sbjct: 2 TRSPRPFNEIPSPGDNGWLNL 22
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 245 bits (628), Expect = 6e-76
Identities = 58/273 (21%), Positives = 99/273 (36%), Gaps = 28/273 (10%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTL 272
+G+K Q D + K +E+ L + ++ N L
Sbjct: 150 ACLIGKKFRDQLDG--RFAKLYHELERGTD------PLAYVDPYLPIESFRRRDEARNGL 201
Query: 273 HSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASE---RHNLSDENIR 329
+ ++N R A+ K LD+LI S + I
Sbjct: 202 VALVADIMNGRIAN--------------PPTDKSDRDMLDVLIAVKAETGTPRFSADEIT 247
Query: 330 EEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMK 389
+ MF GH T+S WTL+ L +++ V +E + + + +L +
Sbjct: 248 GMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDE--LDELYGDGRSVSFHALRQIP 305
Query: 390 YLEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELY 449
LE +KE LRL+P + + R + + + + V +R PE FP P +
Sbjct: 306 QLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDF 365
Query: 450 DPDRFLS-ENVAGRNPYAYIPFSAGPRNCIGES 481
P R+ N + +IPF AG C+G +
Sbjct: 366 VPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAA 398
Score = 91.6 bits (228), Expect = 6e-20
Identities = 10/95 (10%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 38 DGIRPILNNS-RTIHKSSDYCYIEPWLGNGLLTSAGHIWHQRRKILTPAFHFRILEDFVE 96
+ ++ Y ++ P G G++ ++ + A ++
Sbjct: 57 HANEFFFRAGDDDLDQAKAYPFMTPIFGEGVVFD-ASPERRKEMLHNAALRGEQMKGHAA 115
Query: 97 VFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDI 131
++Q ++ GE I++ + T+
Sbjct: 116 TIEDQVRRMIADWGE---AGEIDLLDFFAELTIYT 147
Score = 41.9 bits (99), Expect = 3e-04
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRRE-DLTLLGELILRPQDGIR 41
+++ K I + +LR + E E +++++
Sbjct: 401 IMQIKAIFSVLLREYEFEMAQPPESYRNDHSKMVVQLAQPAA 442
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 223 bits (571), Expect = 1e-67
Identities = 93/445 (20%), Positives = 158/445 (35%), Gaps = 117/445 (26%)
Query: 38 DGIRPILNNSRTIHKSSDYCYIEPWLG-NGLLTSAGHIWHQRRKILTPAFHFRILEDFVE 96
R + + +++ LG N L T G I RRKIL AF R L+ ++
Sbjct: 63 LANRFLFTKEQETFQATWPLSTRILLGPNALATQMGEIHRSRRKILYQAFLPRTLDSYLP 122
Query: 97 VFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDIKLQWEEKSMLRATVTQNMSKLSMSI 156
+ + + G+ + +P + T D+ + L M
Sbjct: 123 KMDGIVQGYLEQWGK---ANEVIWYPQLRRMTFDV-----------------AATLFMGE 162
Query: 157 Q-SVIREFRTIALLLTLGYFVVRRIKQSRLVKLINRIPGPTSLPVLGNSIECNVDNEETA 215
+ S + G F + I +P T
Sbjct: 163 KVSQNPQLFPWFETYIQGLFSLP----------IP-LPN-------------------TL 192
Query: 216 MGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTLHSF 275
G+ A+ + E+ II+ RQ + + D L L
Sbjct: 193 FGKSQRARA-------LLLAELEKIIKARQQQPPSEEDALGIL----------------- 228
Query: 276 SYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTF 335
L AR + + + ++K D ++
Sbjct: 229 -----------LAARDDNNQPLSL--PELK------DQIL------------------LL 251
Query: 336 MFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACI 395
+F GH+T ++A+ LLLG + +I+ +V +E L + T +L M YL+ +
Sbjct: 252 LFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKL---QLSQELTAETLKKMPYLDQVL 308
Query: 396 KEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFL 455
+E LRL P V R+L +D + P+ V + H DP+++P PE +DP+RF
Sbjct: 309 QEVLRLIPPVGGGFRELIQDCQFQGFHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFT 368
Query: 456 SENVAGRN-PYAYIPFSAGPRNCIG 479
+ A N P+A++PF G R C+G
Sbjct: 369 PDGSATHNPPFAHVPFGGGLRECLG 393
Score = 43.0 bits (102), Expect = 2e-04
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDG----IRPIL 44
LE K+ ++++F + ++L L+ RP+D + ++
Sbjct: 398 RLEMKLFATRLIQQFDWTLLP-GQNLELVVTPSPRPKDNLRVKLHSLM 444
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 218 bits (559), Expect = 2e-65
Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 22/273 (8%)
Query: 214 TAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTLH 273
T+ G I++ ++ +V+ K L+ DFL + L
Sbjct: 165 TSFGVNIDSLNNPQDPFVEN------------TKKLLRFDFLDPFFLSITVFPFLIPILE 212
Query: 274 SFSYKVINERKADLKARRNIEETMEDSAED-VKKRPAFLDLLIEA------SERHNLSDE 326
+ V + R++++ E ED K R FL L+I++ LSD
Sbjct: 213 VLNICVFPREVTN-FLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDL 271
Query: 327 NIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLN 386
+ + F+F G++TTS+ + + + L ++ ++Q K+ EEI + P T ++
Sbjct: 272 ELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEID--AVLPNKAPPTYDTVL 329
Query: 387 SMKYLEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRP 446
M+YL+ + E LRL+P + R +DV + +P+ V+I Y LHRDP+ + P
Sbjct: 330 QMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEP 389
Query: 447 ELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIG 479
E + P+RF +N +PY Y PF +GPRNCIG
Sbjct: 390 EKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIG 422
Score = 33.7 bits (78), Expect = 0.15
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDR-REDLTLLGELILRPQDGI 40
++ K+ L +L+ F + + L L +L+P+ +
Sbjct: 427 LMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPV 467
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 210 bits (535), Expect = 3e-62
Identities = 47/278 (16%), Positives = 89/278 (32%), Gaps = 39/278 (14%)
Query: 216 MGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTLHSF 275
+GR + ++ + + S L P L + LH+F
Sbjct: 176 LGRAYFNSNPEETKLGTSAPTLISSWVLFN----LAPTLDLGLPWFLQEP-----LLHTF 226
Query: 276 SYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTF 335
+ K + ++ +A + DE + +
Sbjct: 227 RLPAFLIKSTYNKLYD-------------YFQSVATPVMEQAEKLGVPKDEAVHNILFAV 273
Query: 336 MFEGHDTTSAAICWTLLLLG-SNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEAC 394
F TL +G + + + ++ EEI T ++ M ++
Sbjct: 274 CFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSV 333
Query: 395 IKEALRLYPSVPFIARKLSEDVPLPD----YVLPRDTEVIIVVYNLHRDPEVFPRPELYD 450
+ E+LR+ P VP K + + + + + + +DP+VF RPE Y
Sbjct: 334 VYESLRIEPPVPPQYGKAKSNFTIESHDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYV 393
Query: 451 PDRFLSENVAGRNPYAYIPFSAGP---------RNCIG 479
PDRF+ + Y+ +S GP + C G
Sbjct: 394 PDRFVGDG---EALLKYVWWSNGPETESPTVENKQCAG 428
Score = 37.5 bits (87), Expect = 0.010
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRRED-LTLLGELILRPQDGI 40
+L ++ + + RR+ ++ E L L + I
Sbjct: 433 VLITRLFVIELFRRYDSFEIELGESPLGAAVTLTFLKRASI 473
Score = 31.4 bits (71), Expect = 0.72
Identities = 5/59 (8%), Positives = 10/59 (16%), Gaps = 11/59 (18%)
Query: 73 HIWHQRRKILTPAFHFRILEDFVEVFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDI 131
+ + P F E F + E ++
Sbjct: 128 FMLKNSSNRVIPQFETTYTELFEGLEAELAK-----------NGKAAFNDVGEQAAFRF 175
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 208 bits (531), Expect = 2e-61
Identities = 76/458 (16%), Positives = 147/458 (32%), Gaps = 87/458 (18%)
Query: 61 PWLGNGL--LTSAGHIWHQRRKILTPAFHFRIL----------EDFVEVFQEQSEVL--- 105
PWLG L A + ++ F + + V E L
Sbjct: 28 PWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFH 87
Query: 106 --VRRLGEVGVGESINVFPYVTLCTLDIKLQWEEKSMLRATVTQNMSKLSMSIQSVIREF 163
L E + + +EK+ ++ T+ +L +++
Sbjct: 88 AYAIFLMERIFDVQLPHYS-----------PSDEKARMKLTLLH--RELQALTEAMYTNL 134
Query: 164 RTIALLLTLGYFVVRRIKQSRLVKLINRIPGPTSLPVLGNSIECNVDNEETAMGRKINAQ 223
+ LL + L+ L T G + +
Sbjct: 135 HAV--LLGDATEAGSGWHEMGLLDFSYSF----LLRAGYL----------TLYGIEALPR 178
Query: 224 DDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTLHSFSYKVINER 283
+ + + + L P L + + ++ S +K+++
Sbjct: 179 THESQAQDRVHSAD--VFHTFRQLDRLLPKLARGS--LSVGDKDHMCSVKSRLWKLLSPA 234
Query: 284 KADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDTT 343
+ ARR R +L+ + E +S+E + ++
Sbjct: 235 R---LARR-------------AHRSKWLESYLLHLEEMGVSEEMQARALVLQLWATQGNM 278
Query: 344 SAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHK-----PFTTRSLNSMKYLEACIKEA 398
A W LL L N E V E+ ++A + L+S L++ + E+
Sbjct: 279 GPAAFWLLLFLLKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSES 338
Query: 399 LRLYPSVPFIARKLSEDVPLPD-----YVLPRDTEVIIV-VYNLHRDPEVFPRPELYDPD 452
LRL PFI R++ D+ +P + L R +++ + RDPE++ PE++ +
Sbjct: 339 LRLTA-APFITREVVVDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYN 397
Query: 453 RFLSEN---------VAGRNPYAYIPFSAGPRNCIGES 481
RFL+ + R +P+ AG +C+G S
Sbjct: 398 RFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRS 435
Score = 37.9 bits (88), Expect = 0.008
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 1 MLEEKVILANILRRFRVEAVDRRE-----DLTLLGELILRPQDGIR 41
+ K + +L +E ++ DL+ G +++P+ +
Sbjct: 438 VNSIKQFVFLVLVHLDLELINADVEIPEFDLSRYGFGLMQPEHDVP 483
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 198 bits (505), Expect = 1e-58
Identities = 50/181 (27%), Positives = 73/181 (40%), Gaps = 24/181 (13%)
Query: 301 AEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEI 360
+D + LI +L E E T + GH+T ++A+ W+ LLL +
Sbjct: 184 RKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDW 243
Query: 361 QNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPFIARKLSEDVPLPD 420
Q +V E + A +EALRLYP + R+L + L +
Sbjct: 244 QKRVAESE--------------------EAALAAFQEALRLYPPAWILTRRLERPLLLGE 283
Query: 421 YVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGE 480
LP T +++ Y R FP E + P+RFL E G Y PF G R C+G
Sbjct: 284 DRLPPGTTLVLSPYVTQRLH--FPDGEAFRPERFLEER--GTPSGRYFPFGLGQRLCLGR 339
Query: 481 S 481
Sbjct: 340 D 340
Score = 94.6 bits (236), Expect = 3e-21
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 38 DGIRPILNNSRTIHKSSDYCYIEPWLGNGLLTSAGHIWHQRRKILTPAFHFRILEDFVEV 97
+G+ L T + Y + G GLLT G W + RK L F + + + E
Sbjct: 50 EGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREA 109
Query: 98 FQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDI 131
+E++ GE ++ + +L +
Sbjct: 110 MEEEARAFFGEWR----GEERDLDHEMLALSLRL 139
Score = 46.8 bits (112), Expect = 9e-06
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGIR 41
+LE ++L RRFR++ + +L ++ LRP+ G+
Sbjct: 343 LLEGPIVLRAFFRRFRLDPLPFPR---VLAQVTLRPEGGLP 380
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 191 bits (487), Expect = 4e-55
Identities = 40/283 (14%), Positives = 94/283 (33%), Gaps = 48/283 (16%)
Query: 213 ETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTL 272
G + ++++ + + L P L + + +
Sbjct: 196 RAFYG-----TNPADTKLKADAPGLITKWVLFN----LHPLLSIGLPRVIEEP-----LI 241
Query: 273 HSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEV 332
H+FS + + + E +SA + ++ +++ +S E E
Sbjct: 242 HTFSLPPALVKSD----YQRLYEFFLESAGE----------ILVEADKLGISRE---EAT 284
Query: 333 DTFMFEGHDTTSAAICWTLLLL-----GSNQEIQNKVYEEILVTSFKALHKPFTTRSLNS 387
+F T + + + ++ N++ EEI + K+ T ++
Sbjct: 285 HNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEI-RSVIKSNGGELTMGAIEK 343
Query: 388 MKYLEACIKEALRLYPSVPFIARKLSEDVPLPD----YVLPRDTEVIIVVYNLHRDPEVF 443
M+ ++ + E LR P V + +D+ + + + + RDP++F
Sbjct: 344 MELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIF 403
Query: 444 PRPELYDPDRFLSENVAGRNPYAYIPF-------SAGPRNCIG 479
R + + P+RF+ E + + G + C G
Sbjct: 404 DRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAG 446
Score = 53.0 bits (127), Expect = 1e-07
Identities = 13/98 (13%), Positives = 22/98 (22%), Gaps = 8/98 (8%)
Query: 42 PILNNSRTIHKSS----DYCYIEPWLGN---GLLTSAGHIWHQRRKILTPAFHFRILEDF 94
P+L + + K Y G H++ K L
Sbjct: 96 PVLFDVDKVEKKDLLTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRI 155
Query: 95 VEVFQEQSEVLVRRL-GEVGVGESINVFPYVTLCTLDI 131
FQ L L E+ + + +
Sbjct: 156 FPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNF 193
Score = 32.2 bits (73), Expect = 0.41
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 1 MLEEKVILANILRRFRVEAVDR 22
+L ++ + I RR+ ++
Sbjct: 451 VLVARLFVIEIFRRYDSFDIEV 472
Score = 28.3 bits (63), Expect = 6.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 189 INRIPGPTSLPVLGNSIEC 207
I IPG LP++G +
Sbjct: 27 IRNIPGNYGLPIVGPIKDR 45
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 190 bits (484), Expect = 1e-54
Identities = 51/291 (17%), Positives = 94/291 (32%), Gaps = 51/291 (17%)
Query: 214 TAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLS-SLYKNHQRCLNTL 272
T GR + +D + + + + P + L +++ L
Sbjct: 169 TIFGRDLTRRDTQKAHILNNLDNFKQFD-------KVFPALVAGLPIHMFRTAHNAREKL 221
Query: 273 HSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHN-LSDENIREE 331
+++ + + L + ++ + D +
Sbjct: 222 AESLRHENLQKRESISE--------------------LISLRMFLNDTLSTFDDLEKAKT 261
Query: 332 VDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEI--------LVTSFKALHKPFTTR 383
++ T A W+L + N E EE+ S + +
Sbjct: 262 HLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQA 321
Query: 384 SLNSMKYLEACIKEALRLYPSVPFIARKLSEDVPLPD----YVLPRDTEVIIVVYNLHRD 439
LN + L++ IKE+LRL R ED L Y + +D + + +H D
Sbjct: 322 ELNDLPVLDSIIKESLRLSS-ASLNIRTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLD 380
Query: 440 PEVFPRPELYDPDRFLSENVAGR---------NPYAYIPFSAGPRNCIGES 481
PE++P P + DR+L EN + Y Y+PF +G C G
Sbjct: 381 PEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATICPGRL 431
Score = 53.5 bits (129), Expect = 1e-07
Identities = 8/100 (8%), Positives = 22/100 (22%), Gaps = 6/100 (6%)
Query: 38 DGIRPILNNSRTIH-KSSDYCYIEPWLG-NGLLTSAGHIWHQRRKILTPAFHFRILEDFV 95
+L + + K + G + G+ L
Sbjct: 66 LSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTENINDTFIKTLQGHALNSLT 125
Query: 96 EVFQEQSEVLVRRLGE----VGVGESINVFPYVTLCTLDI 131
E E + ++R + ++ + +
Sbjct: 126 ESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEA 165
Score = 38.5 bits (90), Expect = 0.004
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 1 MLEEKVILANILRRFRVEAVDRRE-----DLTLLGELILRPQDGIR 41
+ E K L +L F +E ++ + D + G IL P + I
Sbjct: 434 IHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILPPLNDIE 479
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 174 bits (444), Expect = 4e-49
Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 22/216 (10%)
Query: 282 ERKADLKARRNIEETMEDSAEDVK-KRPAFLDLLIEASERHNLSDENIREEVDTFMFEGH 340
E++ AR + + + S D K + ++L ++ + + E R + ++
Sbjct: 207 EKQIASAAREKLWKWLTPSGLDRKPREQSWLGSYVKQLQDEGIDAEMQRRAMLLQLWVTQ 266
Query: 341 DTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALR 400
A W + L ++ E V EEI + + ++ + E LR
Sbjct: 267 GNAGPAAFWVMGYLLTHPEALRAVREEI-----QGGKHLRLEERQKNTPVFDSVLWETLR 321
Query: 401 LYPSVPFIARKLSEDVPLPD-----YVLPRDTEVIIVVY-NLHRDPEVFPRPELYDPDRF 454
L + R +++D + Y L R + + + + DP++ +PE++ DRF
Sbjct: 322 LTAAALIT-RDVTQDKKICLSNGQEYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRF 380
Query: 455 LSENV---------AGRNPYAYIPFSAGPRNCIGES 481
L+ + R Y +P+ C G
Sbjct: 381 LNADRTEKKDFFKNGARVKYPSVPWGTEDNLCPGRH 416
Score = 31.5 bits (72), Expect = 0.74
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 38 DGIRPILNNSRTIHKSSDYCYIEPWLGNGLLTSAGHIWHQRRKILTPAFHFRILEDFVEV 97
+ +L++ ++ ++S + + N +L S ++R + F L
Sbjct: 71 NCYDAVLSDVASLDQTSYAQVLMKRIFNMILPSHNPESEKKRAEMH--FQGASLTQLSNS 128
Query: 98 FQEQSEVLVRRLGEVGVGESINVFPYVTLCT 128
Q +L+ LC
Sbjct: 129 MQNNLRLLMTPSEMGLKTSEWKKDGLFNLCY 159
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 166 bits (423), Expect = 1e-46
Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 35/206 (16%)
Query: 287 LKARRNIEETMEDSAEDVKKRPA------FLDLLIEASERHN--LSDENIREEVDTFMFE 338
+AR EE +E ED + L + ++ L E+ +
Sbjct: 184 RRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIEL-INVLR 242
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEA 398
S + ++ L L + + + + + + E ++E
Sbjct: 243 PIVAISYFLVFSALALHEHPKYKEWLRSG-------------------NSREREMFVQEV 283
Query: 399 LRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSEN 458
R YP PF+ + +D + + T V++ +Y + DP ++ P+ + P+RF
Sbjct: 284 RRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAER- 342
Query: 459 VAGRNPYAYIPFSAGP----RNCIGE 480
N + IP G C GE
Sbjct: 343 --EENLFDMIPQGGGHAEKGHRCPGE 366
Score = 58.9 bits (143), Expect = 2e-09
Identities = 11/100 (11%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 38 DGIRPILNNSRTIHKSSDYCYI-EPWLG-NGLLTSAGHIWHQRRKILTPAFHFRILEDFV 95
+ + + R +++ + + G N + G R+ + +
Sbjct: 53 EAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQGMDGSAHIHRKMLFLSLMTPPHQKRLA 112
Query: 96 EVFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDIKLQW 135
E+ E+ + V R + + + +F + W
Sbjct: 113 ELMTEEWKAAVTRWEK---ADEVVLFEEAKEILCRVACYW 149
Score = 36.2 bits (84), Expect = 0.021
Identities = 5/41 (12%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGIR 41
+ K L ++ + + ++ + L + P+ G
Sbjct: 370 IEVMKASLDFLVHQIEYDVPEQSLHYS-LARMPSLPESGFV 409
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 160 bits (406), Expect = 3e-44
Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 34/205 (16%)
Query: 287 LKARRNIEETMEDSAEDVKKRP-------AFLDLLIEASERHNLSDENIREEVDTFMFEG 339
ARR ++ + E ++ A + +L ++ +
Sbjct: 183 RLARRRVDAWAKRIIEGIRAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRP 242
Query: 340 HDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEAL 399
+ I + L + I+ + ++ Y E ++E
Sbjct: 243 TVAIAVYITFVAHALQTCSGIRAALVQQ--------------------PDYAELFVQEVR 282
Query: 400 RLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENV 459
R YP P + + S+D P +V++ +Y + D + P+ + P+RF +
Sbjct: 283 RFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRAW-- 340
Query: 460 AGRNPYAYIPFSAGP----RNCIGE 480
+ + +IP G C GE
Sbjct: 341 -DEDSFNFIPQGGGDHYLGHRCPGE 364
Score = 58.6 bits (142), Expect = 2e-09
Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 7/114 (6%)
Query: 26 LTLLGE--LILRPQDGIRPILNNSRTIHKSSDYCYIE-PWLG-NGLLTSAGHIWHQRRKI 81
L + L+ + +R + + I+ LG G+ G R+++
Sbjct: 38 SRFLLKKTNCLKGAKAAEIFYDTTRFEREGAMPVAIQKTLLGQGGVQGLDGETHRHRKQM 97
Query: 82 LTPAFHFRILEDFVEVFQEQSEVLVRRLGEVGVGESINVFPYVTLCTLDIKLQW 135
+ ++F+ + V I + + W
Sbjct: 98 FMGLMTPERVRALAQLFEAEWRRAVPGWTR---KGEIVFYDELHEPLTRAVCAW 148
Score = 37.8 bits (88), Expect = 0.008
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 1 MLEEKVILANILRRFRVEAVDRREDLTLLGELILRPQDGIR 41
+ KV ++ R + D+ + L P+ G
Sbjct: 368 LAIMKVAAHLLVNAMRYDVPDQDLSID-FARLPALPKSGFV 407
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 144 bits (366), Expect = 5e-38
Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 26/238 (10%)
Query: 252 PDFLFRLSSLYKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFL 311
P ++ R ++ F ++I + + K + F+
Sbjct: 207 PWIGILPFGKHQQLFRNAAVVYDFLSRLIEKASVNRK---------PQLPQH------FV 251
Query: 312 DLLIEASERH------NLSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVY 365
D ++ ++ S EN+ V + G +TT+ + W +L + IQ +V
Sbjct: 252 DAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQ 311
Query: 366 EEI-LVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYVL 423
+EI L+ + + M Y EA + E LR VP I SED + Y +
Sbjct: 312 KEIDLIMGP---NGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSI 368
Query: 424 PRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGES 481
P+ T VI +Y++H D + + PE++ P+RFL + A +PFS G R+C+GE
Sbjct: 369 PKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEH 426
Score = 29.1 bits (66), Expect = 4.1
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 176 VVRRIKQSRLVKLINRIPGPTSLPVLGN 203
+ ++ KQ R + PGP LP +GN
Sbjct: 1 MAKKTKQRRPMGFP---PGPPGLPFIGN 25
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 140 bits (355), Expect = 2e-36
Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 31/236 (13%)
Query: 260 SLYKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASE 319
++++ ++ +F L D +D I ++E
Sbjct: 216 TVFREFEQLNRNFSNFILDKFLRHCESL----RPGAAPRD----------MMDAFILSAE 261
Query: 320 RHN----------LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEI- 368
+ L EN+ + DT S A+ W LLL ++Q +V E+
Sbjct: 262 KKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELD 321
Query: 369 LVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYVLPRDT 427
V + ++ Y+ A + EA+R VP I + + + Y +P+DT
Sbjct: 322 QVVGR---DRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDT 378
Query: 428 EVIIVVYNLHRDPEVFPRPELYDPDRFLSEN--VAGRNPYAYIPFSAGPRNCIGES 481
V + ++++ DP +P PE +DP RFL ++ + + FS G R CIGE
Sbjct: 379 VVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEE 434
Score = 27.9 bits (63), Expect = 8.3
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 177 VRRIKQSRLVKLINRIPGPTSLPVLGN 203
+ + S+ + PGP + P++GN
Sbjct: 1 MAKKTSSK-----GKPPGPFAWPLIGN 22
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 139 bits (352), Expect = 4e-36
Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 27/237 (11%)
Query: 254 FLFRLSSLYKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDL 313
L + +L R + +++ E + + D +
Sbjct: 207 VLLHIPALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQPPR--------D------LTEA 252
Query: 314 LIEASERHN------LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEE 367
+ E+ +DEN+R V G TTS + W LLL+ + ++Q +V +E
Sbjct: 253 FLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQE 312
Query: 368 ILVTSFKAL--HKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYVLP 424
I + + M Y A I E R VP + S D+ + + +P
Sbjct: 313 I----DDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIP 368
Query: 425 RDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGES 481
+ T +I + ++ +D V+ +P + P+ FL P A++PFSAG R C+GE
Sbjct: 369 KGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEP 425
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 139 bits (352), Expect = 5e-36
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 37/235 (15%)
Query: 262 YKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERH 321
+ + F K + E D ++S D L + S++
Sbjct: 226 LQRFKAFNQRFLWFLQKTVQEHYQDFD---------KNSVRD------ITGALFKHSKKG 270
Query: 322 N------LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEI-LVTSFK 374
+ E I V+ G DT + AI W+L+ L + EIQ K+ +E+ V +
Sbjct: 271 PRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIGRE 330
Query: 375 AL----HKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYVLPRDTEV 429
+P + YLEA I E R +PF I + D L + +P+ V
Sbjct: 331 RRPRLSDRP-------QLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKCCV 383
Query: 430 IIVVYNLHRDPEVFPRPELYDPDRFLSEN---VAGRNPYAYIPFSAGPRNCIGES 481
+ + ++ DPE++ P + P+RFL+ + + + F G R CIGE
Sbjct: 384 FVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEV 438
Score = 29.1 bits (66), Expect = 4.0
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 175 FVVRRIKQSRLVKLINRIPGPTSLPVLGN 203
V++ ++ K + P P P+LG+
Sbjct: 2 AVLKGLRPRVP-KGLKSPPEPWGWPLLGH 29
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 138 bits (351), Expect = 6e-36
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 28/229 (12%)
Query: 262 YKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERH 321
++ + K + K + D D +++ R
Sbjct: 222 LWRLKQAIENRDHMVEKQLRRHKESMV---------AGQWRD------MTDYMLQGVGRQ 266
Query: 322 N-------LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEI-LVTSF 373
L + ++ V G +TT++ + W + L + EIQ ++ EE+
Sbjct: 267 RVEEGPGQLLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGP 326
Query: 374 KALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYVLPRDTEVIIV 432
A T + + L A I E LRL P VP + + + + Y +P VI
Sbjct: 327 GASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGYDIPEGMVVIPN 386
Query: 433 VYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGES 481
+ H D V+ +P + PDRFL + + F G R C+GES
Sbjct: 387 LQGAHLDETVWEQPHEFRPDRFLEPG--AN--PSALAFGCGARVCLGES 431
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 138 bits (349), Expect = 1e-35
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 42/240 (17%)
Query: 262 YKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEA---S 318
+ + + + K++ K + DS + LD L++A S
Sbjct: 211 LEKLKSHVKIRNDLLNKILENYKEKFR---------SDSITN------MLDTLMQAKMNS 255
Query: 319 ERHN---------LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEI- 368
+ N LSD +I + G +TT++ + WTL L N +++ K+YEEI
Sbjct: 256 DNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEID 315
Query: 369 LVTSFKAL----HKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYVL 423
F + + LEA I+E LRL P P I K + D + ++ +
Sbjct: 316 QNVGFSRTPTISDRN-------RLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAV 368
Query: 424 PRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSEN--VAGRNPYAYIPFSAGPRNCIGES 481
+ TEVII ++ LH + + + +P+ + P+RFL+ +Y+PF AGPR+CIGE
Sbjct: 369 DKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEI 428
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 133 bits (338), Expect = 3e-34
Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 252 PDFLFRLSSLYKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFL 311
P FL L ++ + + + + + + E L + D
Sbjct: 201 PSFLHYLPGSHRKVIKNVAEVKEYVSERVKEHHQSLD---------PNCPRD------LT 245
Query: 312 D-LLIEASERHN-----LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVY 365
D LL+E + + + + I V F G +TTS + + LL+L EI+ K++
Sbjct: 246 DCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLH 305
Query: 366 EEILVTSFKAL--HKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYV 422
EEI + + + + M Y++A + E R VP + + + D Y+
Sbjct: 306 EEI----DRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYL 361
Query: 423 LPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGES 481
+P+ T V+ + ++ D + FP PE + P+ FL+EN + + PFS G R C GE
Sbjct: 362 IPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEG 420
Score = 27.9 bits (63), Expect = 9.0
Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 64 GNGLLTSAGHIWHQRRKILTPAF-HF----RILEDFVEVFQEQSEVLVRRLGEVGVGESI 118
G++ + G W R+ ++ + E + Q ++ L+ L + G+
Sbjct: 90 DRGIIFNNGPTWKDIRRFSLTTLRNYGMGKQGNESRI---QREAHFLLEALRKTQ-GQPF 145
Query: 119 NVFPYVTLCT 128
+ +
Sbjct: 146 DPTFLIGCAP 155
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 131 bits (332), Expect = 2e-33
Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 28/239 (11%)
Query: 252 PDFLFRLSSLYKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFL 311
FL ++ R L +++F + + + +A L + D F+
Sbjct: 202 SGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLD---------PSNPRD------FI 246
Query: 312 D-LLIEASERHN-----LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVY 365
D L+ + + +N+ V + F G +TTS + + LL+ + +V
Sbjct: 247 DVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQ 306
Query: 366 EEILVTSFKAL--HKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYV 422
+EI + + H+P M Y +A I E RL +PF + +++D YV
Sbjct: 307 KEI----EQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYV 362
Query: 423 LPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGES 481
+P++TEV V+ + DP F P ++P FL N A + ++PFS G R C+GE
Sbjct: 363 IPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEG 421
Score = 28.3 bits (64), Expect = 6.9
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 64 GNGLLTSAGHIWHQRRKILTPAF-HF----RILEDFVEVFQEQSEVLVRRLGEVGVGESI 118
G G++ + G W R+ F R +E+ + QE++ LV L + G +
Sbjct: 91 GYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERI---QEEARCLVEELRKSK-GALL 146
Query: 119 NVFPYVTLCT 128
+ T
Sbjct: 147 DNTLLFHSIT 156
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 130 bits (330), Expect = 4e-33
Identities = 54/239 (22%), Positives = 109/239 (45%), Gaps = 28/239 (11%)
Query: 252 PDFLFRLSSLYKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFL 311
+ + + + + S+ + + E + + ++ +D F+
Sbjct: 203 SPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMD---------MNNPQD------FI 247
Query: 312 D-LLIE-ASERHN----LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVY 365
D L++ E+HN + E++ G +TTS + + LLLL + E+ KV
Sbjct: 248 DCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQ 307
Query: 366 EEILVTSFKAL--HKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYV 422
EEI + + ++ + + M Y +A + E R +P + ++ D+ +Y+
Sbjct: 308 EEI----ERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYL 363
Query: 423 LPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGES 481
+P+ T ++I + ++ D + FP PE++DP FL E + ++PFSAG R C+GE+
Sbjct: 364 IPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEA 422
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 129 bits (327), Expect = 9e-33
Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 252 PDFLFRLSSLYKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPAFL 311
+ L + + L L F K + + L +S D F+
Sbjct: 202 SSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLD---------PNSPRD------FI 246
Query: 312 D-LLIEASERHN-----LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVY 365
D LI E +N+ G +T S + + LLL + E++ KV+
Sbjct: 247 DSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVH 306
Query: 366 EEILVTSFKAL--HKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPLPDYV 422
EEI + + ++ M Y+EA I E R +P +AR++ +D D+
Sbjct: 307 EEI----DRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFF 362
Query: 423 LPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGES 481
LP+ TEV ++ ++ RDP F P+ ++P FL+E + A++PFS G RNC GE
Sbjct: 363 LPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEG 421
Score = 27.9 bits (63), Expect = 8.3
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 64 GNGLLTSAGHIWHQRRKILTPAF-HF----RILEDFVEVFQEQSEVLVRRLGEVGVGESI 118
G G++ S G Q R+ F R +E+ + QE++ L+ L G G +I
Sbjct: 91 GYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERI---QEEAGFLIDALRGTG-GANI 146
Query: 119 NVFPYVTLCT 128
+ +++
Sbjct: 147 DPTFFLSRTV 156
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 73.1 bits (180), Expect = 5e-14
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEA-SERHNLSDENIREEVDTFMFE 338
R L + + + ++ + P + +L + E LSD++I + +
Sbjct: 210 ARAHSLWCSEQLSQYLMPVIKERRVNPGSDLISILCTSEYEGMALSDKDILALILNVLLA 269
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEA 398
+ + + L +N E N V + RSL + I E
Sbjct: 270 ATEPADKTLALMIYHLLNNPEQMNDVLAD---------------RSL-----VPRAIAET 309
Query: 399 LRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDR-FLSE 457
LR P V I R+LS+D + + +DT V ++ +RDPE F +P++++ R L
Sbjct: 310 LRYKPPVQLIPRQLSQDTVVGGMEIKKDTIVFCMIGAANRDPEAFEQPDVFNIHREDLGI 369
Query: 458 NVAGRNPYAYIPFSAGPRNCIG 479
A ++ F +G NC+G
Sbjct: 370 KSAFSGAARHLAFGSGIHNCVG 391
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 69.6 bits (171), Expect = 6e-13
Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 33/202 (16%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEASERHNLSDENIREEVDTFMFEG 339
+ A + + + ED + P D L++A+ +++ + F G
Sbjct: 175 DVDRAAVAFGYLSARVAEMLEDKRVNPGDGLADSLLDAARAGEITESEAIATILVFYAVG 234
Query: 340 HDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEAL 399
H I + L E+ + S A I E +
Sbjct: 235 HMAIGYLIASGIELFARRPEVFTAFRND---------------ESA-----RAAIINEMV 274
Query: 400 RLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSEN- 458
R+ P R +EDV + ++ + + ++ +RDPEVF P+++D R + +
Sbjct: 275 RMDPPQLSFLRFPTEDVEIGGVLIEAGSPIRFMIGAANRDPEVFDDPDVFDHTRPPAASR 334
Query: 459 -VAGRNPYAYIPFSAGPRNCIG 479
++ F GP +C G
Sbjct: 335 NLS---------FGLGPHSCAG 347
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 69.2 bits (170), Expect = 8e-13
Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 30/199 (15%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEAS-ERHNLSDENIREEVDTFMFEGH 340
R++ ++ + + + + P I A + ++ E V + + G
Sbjct: 194 LRQSAIERSAPHQAYVAEQCQRPNLAPGGFGACIHAFSDTGEITPEEAPLLVRSLLSAGL 253
Query: 341 DTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALR 400
DTT I + L + ++ + SL +EA+R
Sbjct: 254 DTTVNGIAAAVYCLARFPDEFARLRAD---------------PSL-----ARNAFEEAVR 293
Query: 401 LYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVA 460
V R + DV L + +V++ + + +RDP + P+ YD R S +V
Sbjct: 294 FESPVQTFFRTTTRDVELAGATIGEGEKVLMFLGSANRDPRRWDDPDRYDITRKTSGHVG 353
Query: 461 GRNPYAYIPFSAGPRNCIG 479
F +G C+G
Sbjct: 354 ---------FGSGVHMCVG 363
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 68.4 bits (168), Expect = 1e-12
Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 30/201 (14%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEAS-ERHNLSDENIREEVDTFMFE 338
+ + ++ + + P + L+ A + L DE +
Sbjct: 182 LAERIADVLNPLTAYLKARCAERRADPGDDLISRLVLAEVDGRALDDEEAANFSTALLLA 241
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEA 398
GH TT+ + + L + + E+ + A ++E
Sbjct: 242 GHITTTVLLGNIVRTLDEHPAHWDAAAED---------------PGR-----IPAIVEEV 281
Query: 399 LRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSEN 458
LR P P + R ++ + +P D V V + +RD + P+ +DP R
Sbjct: 282 LRYRPPFPQMQRTTTKATEVAGVPIPADVMVNTWVLSANRDSDAHDDPDRFDPSR----- 336
Query: 459 VAGRNPYAYIPFSAGPRNCIG 479
A + F G C+G
Sbjct: 337 --KSGGAAQLSFGHGVHFCLG 355
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 66.9 bits (164), Expect = 4e-12
Identities = 37/194 (19%), Positives = 61/194 (31%), Gaps = 31/194 (15%)
Query: 289 ARRNIEETMEDSAEDVKKRPA--FLDLLIEAS-ERHNLSDENIREEVDTFMFEGHDTTSA 345
++ ++ + E +P ++ + + R +F G DT +A
Sbjct: 182 LKQAADDYLWPFIEKRMAQPGDDLFSRILSEPVGGRPWTVDEARRMCRNLLFGGLDTVAA 241
Query: 346 AICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSV 405
I L L + E Q + E L + A E +R YP+V
Sbjct: 242 MIGMVALHLARHPEDQRLLRER---------------PDL-----IPAAADELMRRYPTV 281
Query: 406 PFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPY 465
+R DV + + V + + DP F PE DR G P
Sbjct: 282 AV-SRNAVADVDADGVTIRKGDLVYLPSVLHNLDPASFEAPEEVRFDR-------GLAPI 333
Query: 466 AYIPFSAGPRNCIG 479
+ G C+G
Sbjct: 334 RHTTMGVGAHRCVG 347
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 66.2 bits (162), Expect = 8e-12
Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 33/201 (16%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEASER-HNLSDENIREEVDTFMFE 338
+ ++ A + E + + + ++ + D+ V +
Sbjct: 197 QGRSLEAANKGFFEYVAPIIAARRGGSGTDLITRILNVEIDGKPMPDDRALGLVSLLLLG 256
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEA 398
G DT + + ++ L + E ++ E L+ ++E
Sbjct: 257 GLDTVVNFLGFMMIYLSRHPETVAEMRRE---------------PLK-----LQRGVEEL 296
Query: 399 LRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSEN 458
R + V AR + D+ +L +++ D P D R +
Sbjct: 297 FRRFAVVSD-ARYVVSDMEFHGTMLKEGDLILLPTALHGLDDRHHDDPMTVDLSRRDVTH 355
Query: 459 VAGRNPYAYIPFSAGPRNCIG 479
F+ GP C G
Sbjct: 356 ST---------FAQGPHRCAG 367
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 65.7 bits (161), Expect = 9e-12
Identities = 25/194 (12%), Positives = 62/194 (31%), Gaps = 33/194 (17%)
Query: 289 ARRNIEETMEDSAEDVKKRPA--FLDLLIEAS-ERHNLSDENIREEVDTFMFEGHDTTSA 345
+ + + P + +I + + +LS++++ + G D T+
Sbjct: 180 IFAELVAHARTLIAERRTNPGNDIMSRVIMSKIDGESLSEDDLIGFFTILLLGGIDNTAR 239
Query: 346 AICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSV 405
+ L + E++ ++ L + + E LR Y
Sbjct: 240 FLSSVFWRLAWDIELRRRLIAH---------------PEL-----IPNAVDELLRFYGPA 279
Query: 406 PFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPY 465
R ++++V + D + ++ RD F P+ +R + +++
Sbjct: 280 MV-GRLVTQEVTVGDITMKPGQTAMLWFPIASRDRSAFDSPDNIVIERTPNRHLS----- 333
Query: 466 AYIPFSAGPRNCIG 479
G C+G
Sbjct: 334 ----LGHGIHRCLG 343
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 65.8 bits (161), Expect = 1e-11
Identities = 35/194 (18%), Positives = 75/194 (38%), Gaps = 32/194 (16%)
Query: 289 ARRNIEETMEDSAEDVKKRPA--FLDLLIEASERHN-LSDENIREEVDTFMFEGHDTTSA 345
A + + + ++ ++ P + L+ E + L+++ I + + GH+TT
Sbjct: 204 AGMWLRDYLRALIDERRRTPGEDLMSGLVAVEESGDQLTEDEIIATCNLLLIAGHETTVN 263
Query: 346 AICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSV 405
I L + + + S A I+E +R P V
Sbjct: 264 LIANAALAMLRTPGQWAALAAD---------------GSR-----ASAVIEETMRYDPPV 303
Query: 406 PFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPY 465
++R +D+ + + +P+ +++++ HRDP + P+ +DPDR ++
Sbjct: 304 QLVSRYAGDDLTIGTHTVPKGDTMLLLLAAAHRDPTIVGAPDRFDPDRAQIRHLG----- 358
Query: 466 AYIPFSAGPRNCIG 479
F G C+G
Sbjct: 359 ----FGKGAHFCLG 368
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 65.0 bits (159), Expect = 2e-11
Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 31/200 (15%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEASERHNLSDENIREEVDTFMFEG 339
++ + K+ P + +L++ E+ L++E G
Sbjct: 176 ALTEGNIMAVQAMAYFKELIQKRKRHPQQDMISMLLKGREKDKLTEEEAASTCILLAIAG 235
Query: 340 HDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEAL 399
H+TT I ++L L + E K+ E L + ++E L
Sbjct: 236 HETTVNLISNSVLCLLQHPEQLLKLREN---------------PDL-----IGTAVEECL 275
Query: 400 RLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENV 459
R AR SED+ + + + +V +++ +RDP +F P+++D R + ++
Sbjct: 276 RYESPTQMTARVASEDIDICGVTIRQGEQVYLLLGAANRDPSIFTNPDVFDITRSPNPHL 335
Query: 460 AGRNPYAYIPFSAGPRNCIG 479
+ F G C+G
Sbjct: 336 S---------FGHGHHVCLG 346
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 63.8 bits (156), Expect = 4e-11
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEASERHNLSDENIREEVDTFMFEG 339
+ + A + +E + ++ L L+++A +R +S I V TF+F G
Sbjct: 175 DMRRGHAAIAEFADYVERALARRRREGGEDLLALMLDAHDRGLMSRNEIVSTVVTFIFTG 234
Query: 340 HDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEAL 399
H+T ++ + +L L ++ + + + L L ++E L
Sbjct: 235 HETVASQVGNAVLSLLAHPDQLDLLRRR---------------PDL-----LAQAVEECL 274
Query: 400 RLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENV 459
R PSV R+L DV L L RD V+++ +RDP + RP+ +D +R ++
Sbjct: 275 RYDPSVQSNTRQLDVDVELRGRRLRRDDVVVVLAGAANRDPRRYDRPDDFDIERDPVPSM 334
Query: 460 AGRNPYAYIPFSAGPRNCIG 479
+ F AG R C+G
Sbjct: 335 S---------FGAGMRYCLG 345
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 63.8 bits (156), Expect = 4e-11
Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 35/204 (17%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEASERHN---LSDENIREEVDTFM 336
L A ++ E + PA + L+ A + +I T +
Sbjct: 189 ATTGALDAVGSMMAYFTGLIERRRTEPADDAISHLVAAGVGADGDTAGTLSILAFTFTMV 248
Query: 337 FEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIK 396
G+DT + + ++ LL + + + ++ + ++
Sbjct: 249 TGGNDTVTGMLGGSMPLLHRRPDQRRLLLDD---------------PEG-----IPDAVE 288
Query: 397 EALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVF-PRPELYDPDRFL 455
E LRL V +AR + DV + D +P V+++ + +RD + P D R
Sbjct: 289 ELLRLTSPVQGLARTTTRDVTIGDTTIPAGRRVLLLYGSANRDERQYGPDAAELDVTRCP 348
Query: 456 SENVAGRNPYAYIPFSAGPRNCIG 479
+ FS G +C+G
Sbjct: 349 RNILT---------FSHGAHHCLG 363
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 63.4 bits (155), Expect = 5e-11
Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 32/201 (15%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEASER-HNLSDENIREEVDTFMFE 338
+ + + A + + + P + +L+ + LSD+ + E +
Sbjct: 171 DFQITMDAFAAYNDFTRATIAARRADPTDDLVSVLVSSEVDGERLSDDELVMETLLILIG 230
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEA 398
G +TT + L N++ + + + SL L I+E
Sbjct: 231 GDETTRHTLSGGTEQLLRNRDQWDLLQRD---------------PSL-----LPGAIEEM 270
Query: 399 LRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSEN 458
LR V + R L+ D L +++++ + + D VF PE +D R + +
Sbjct: 271 LRWTAPVKNMCRVLTADTEFHGTALCAGEKMMLLFESANFDEAVFCEPEKFDVQRNPNSH 330
Query: 459 VAGRNPYAYIPFSAGPRNCIG 479
+A F G C+G
Sbjct: 331 LA---------FGFGTHFCLG 342
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 62.7 bits (153), Expect = 8e-11
Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 33/195 (16%)
Query: 288 KARRNIEETMEDSAEDVKKRPA--FLDLLIEASER-HNLSDENIREEVDTFMFEGHDTTS 344
+A+ + + + E +++P + ++ ++ + + + G DT
Sbjct: 196 EAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVV 255
Query: 345 AAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPS 404
+ +++ L + E + ++ E + A +E LR +
Sbjct: 256 NFLSFSMEFLAKSPEHRQELIER---------------PER-----IPAACEELLRRFSL 295
Query: 405 VPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNP 464
V R L+ D L + ++++ D P D R +
Sbjct: 296 VAD-GRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQKVSHTT---- 350
Query: 465 YAYIPFSAGPRNCIG 479
F G C+G
Sbjct: 351 -----FGHGSHLCLG 360
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 62.7 bits (153), Expect = 1e-10
Identities = 26/194 (13%), Positives = 57/194 (29%), Gaps = 33/194 (17%)
Query: 289 ARRNIEETMEDSAEDVKKRPA--FLDLLIEASER-HNLSDENIREEVDTFMFEGHDTTSA 345
++ + L++ + ++ + + + + G DT
Sbjct: 203 GNNGFYAYVDPIIRARVGGDGDDLITLMVNSEINGERIAHDKAQGLISLLLLGGLDTVVN 262
Query: 346 AICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSV 405
+ + ++ L + E+ ++ + L +E R +P V
Sbjct: 263 FLSFFMIHLARHPELVAELRSD---------------PLK-----LMRGAEEMFRRFPVV 302
Query: 406 PFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPY 465
AR +++D L R +++ D P P D R
Sbjct: 303 SE-ARMVAKDQEYKGVFLKRGDMILLPTALHGLDDAANPEPWKLDFS---------RRSI 352
Query: 466 AYIPFSAGPRNCIG 479
++ F GP C G
Sbjct: 353 SHSTFGGGPHRCAG 366
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 61.9 bits (151), Expect = 2e-10
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 32/182 (17%)
Query: 301 AEDVKKRPAFLDL---LIEASERHNLSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSN 357
E V K P DL L + N++ E V + G+DTT ++ +L L N
Sbjct: 226 NERVNKDPGN-DLISMLAHSPATRNMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKN 284
Query: 358 QEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPFIARKLSEDVP 417
+ K+ +L +E + E +R + + R D
Sbjct: 285 PDQFAKLKAN---------------PAL-----VETMVPEIIRWQTPLAHMRRTAIADSE 324
Query: 418 LPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNC 477
L + + +V++ Y+ +RD EV RPE + DR P ++ F G C
Sbjct: 325 LGGKTIRKGDKVVMWYYSGNRDDEVIDRPEEFIIDR--------PRPRQHLSFGFGIHRC 376
Query: 478 IG 479
+G
Sbjct: 377 VG 378
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 61.1 bits (149), Expect = 2e-10
Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 44/195 (22%)
Query: 298 EDSAEDVKKRPAFLDLLIEASERHN-------------LSDENIREEVDTFMFEGHDTTS 344
E + +L+L+ + N LSD + + G++TT+
Sbjct: 156 GKPGEIFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTT 215
Query: 345 AAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPS 404
I +++ ++ EE L I+EALR P
Sbjct: 216 NLISNSVIDFTRFNL-WQRIREENLYLKA---------------------IEEALRYSPP 253
Query: 405 VPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNP 464
V RK E V L D + V + + + +RD EVF E + PD RNP
Sbjct: 254 VMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPD---------RNP 304
Query: 465 YAYIPFSAGPRNCIG 479
++ F +G C+G
Sbjct: 305 NPHLSFGSGIHLCLG 319
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 59.9 bits (146), Expect = 5e-10
Identities = 31/199 (15%), Positives = 73/199 (36%), Gaps = 37/199 (18%)
Query: 285 ADLKARRNIEETMEDSAEDVKKRPA--FLDLLIEAS-ERHNLSDENIREEVDTFMFEGHD 341
+ + M ++ K + +++L +S + L+ + + + + G++
Sbjct: 132 KRDENFNYVNNRMVSRLLEIFKSDSHGIINVLAGSSLKNRKLTMDEKIKYIMLLIIGGNE 191
Query: 342 TTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRL 401
TT+ I + ++ N +I + + ++E LR
Sbjct: 192 TTTNLIGNMIRVIDENPDIIDDALKNR-----------------------SGFVEETLRY 228
Query: 402 YPSVP-FIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVA 460
Y + R +ED + + + + +VI+ + + +RD F P+L+ R
Sbjct: 229 YSPIQFLPHRFAAEDSYINNKKIKKGDQVIVYLGSANRDETFFDEPDLFKIGR------- 281
Query: 461 GRNPYAYIPFSAGPRNCIG 479
R ++ F G C+G
Sbjct: 282 -REM--HLAFGIGIHMCLG 297
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 60.4 bits (147), Expect = 6e-10
Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 34/203 (16%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPAFLDL---LIEASERHN-LSDENIREEVDTFMF 337
E K + + + ++ ++ P D+ L++A + LS + + V +
Sbjct: 194 ETKTLVASVTEGLALLHGVLDERRRNPLENDVLTMLLQAEADGSRLSTKELVALVGAIIA 253
Query: 338 EGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKE 397
G DTT I + +L L + E V E L + + E
Sbjct: 254 AGTDTTIYLIAFAVLNLLRSPEALELVKAE---------------PGL-----MRNALDE 293
Query: 398 ALRLYPSVP-FIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLS 456
LR + R +D+ + + V +++ + RD VF RP+++D R S
Sbjct: 294 VLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRDTS 353
Query: 457 ENVAGRNPYAYIPFSAGPRNCIG 479
++A + GP C G
Sbjct: 354 ASLA---------YGRGPHVCPG 367
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 60.4 bits (147), Expect = 6e-10
Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 24/171 (14%)
Query: 287 LKARRNIEETMEDSAEDVKKRPAFLDL---LIEAS-ERHNLSDENIREEVDTFMFEGHDT 342
++ +I AED + DL L+EA + LS I + G++T
Sbjct: 220 MQVSADIGAYATALAEDRRVNHHD-DLTSSLVEAEVDGERLSSREIASFFILLVVAGNET 278
Query: 343 TSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLY 402
T AI +L L E +++ + + L ++E +R
Sbjct: 279 TRNAITHGVLALSRYPEQRDRWWSD--------------FDGL-----APTAVEEIVRWA 319
Query: 403 PSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDR 453
V ++ R L++D+ L + +V + + +RD F P +D R
Sbjct: 320 SPVVYMRRTLTQDIELRGTKMAAGDKVSLWYCSANRDESKFADPWTFDLAR 370
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 60.4 bits (147), Expect = 6e-10
Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 311 LDLLIEASER-HNLSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEIL 369
L LL+ A + LS + I + GH+TT+ + +L L +++++ +++
Sbjct: 226 LTLLVRARDTGSPLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTT-- 283
Query: 370 VTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEV 429
A ++E +R P V + R ED+ L D+ +PR + V
Sbjct: 284 -------------PES-----TPAAVEELMRYDPPVQAVTRWAYEDIRLGDHDIPRGSRV 325
Query: 430 IIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIG 479
+ ++ + +RDP FP P++ D R V F G C+G
Sbjct: 326 VALLGSANRDPARFPDPDVLDVHRAAERQVG---------FGLGIHYCLG 366
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 60.0 bits (146), Expect = 8e-10
Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 36/201 (17%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPAFLDL---LIEASERHNLSDENIREEVDTFMFE 338
+ +A I ++ +K P DL L+ + L+ +++ D +
Sbjct: 199 DGMTPRQAHTEILVYFDELITARRKEPGD-DLVSTLVTD-DD--LTIDDVLLNCDNVLIG 254
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEA 398
G++TT AI + L + + + + + ++ ++E
Sbjct: 255 GNETTRHAITGAVHALATVPGLLTALRDG---------------SAD-----VDTVVEEV 294
Query: 399 LRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSEN 458
LR + R + DV + LP T V+ + +RDP F P+ + P
Sbjct: 295 LRWTSPAMHVLRVTTADVTINGRDLPSGTPVVAWLPAANRDPAEFDDPDTFLPG------ 348
Query: 459 VAGRNPYAYIPFSAGPRNCIG 479
R P +I F G +C+G
Sbjct: 349 ---RKPNRHITFGHGMHHCLG 366
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 58.5 bits (142), Expect = 2e-09
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 397 EALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLS 456
E LRL+P++ R + +V L ++V+ EV++VV +RDPEVF P+ D DR +
Sbjct: 261 EVLRLHPALHLERRTATAEVRLGEHVIGEGEEVVVVVAAANRDPEVFAEPDRLDVDRPDA 320
Query: 457 ENVAGRNPYAYIPFSAGPRNCIG 479
+ +
Sbjct: 321 DRAL---------SAHRGHPGRL 334
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 58.0 bits (141), Expect = 2e-09
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 48/205 (23%)
Query: 282 ERKADLKARRNIEETMEDSAEDVKKRPAFLDL---LIEASERHNLSDENIREEVDTFMFE 338
E + + + + + K + DL + + NLS+ E + +
Sbjct: 156 EIFSIGRKYLELISFSKKELDSRKGKEIV-DLTGKIANS----NLSEL----EKEGYFIL 206
Query: 339 ----GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEAC 394
G++TT+ I + V E+ +L +
Sbjct: 207 LMIAGNETTTNLIGNAIEDFTLYNSWD-YVREK---------------GALKA------- 243
Query: 395 IKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRF 454
++EALR P V R E V + D V+ V + + + +RD EVF P+ + PDR
Sbjct: 244 VEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDRT 303
Query: 455 LSENVAGRNPYAYIPFSAGPRNCIG 479
+ +++ F +G C+G
Sbjct: 304 PNPHLS---------FGSGIHLCLG 319
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 57.6 bits (140), Expect = 4e-09
Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 31/194 (15%)
Query: 289 ARRNIEETMEDSAEDVKKRPA--FLDLLIEASERHNLSDENIREEVDTFMFEGHDTTSAA 346
+ + + + E K P ++ A L D +R V T + G++TT+
Sbjct: 202 GLGRMFDYLVAAIEKRKVEPGDDLTSDIVRAFHDGVLDDYELRTLVATVLVAGYETTNHQ 261
Query: 347 ICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVP 406
+ + + + K+ E L ++E LR P++P
Sbjct: 262 LALAMYDFAQHPDQWMKIKEN---------------PEL-----APQAVEEVLRWSPTLP 301
Query: 407 F-IARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPY 465
R +ED + +P T V + + HRDP VF + +D +
Sbjct: 302 VTATRVAAEDFEVNGVRIPTGTPVFMCAHVAHRDPRVFADADRFDITV--------KREA 353
Query: 466 AYIPFSAGPRNCIG 479
I F GP C+G
Sbjct: 354 PSIAFGGGPHFCLG 367
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 56.9 bits (138), Expect = 7e-09
Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 34/183 (18%)
Query: 301 AEDVKKRPAFLDL---LIEAS-ERHNLSDENIREEVDTFMFEGHDTTSAAICWTLLLLGS 356
D + P D+ L + + + + D+ I GHDTTS++ ++ L
Sbjct: 227 TVDRRSCPKD-DVMSLLANSKLDGNYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSR 285
Query: 357 NQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPFIARKLSEDV 416
N E + +L + + EA+R V R D
Sbjct: 286 NPEQLALAKSD---------------PAL-----IPRLVDEAVRWTAPVKSFMRTALADT 325
Query: 417 PLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRN 476
+ + R +++ + +RD EVF P+ +D R P ++ F G
Sbjct: 326 EVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDIT---------RFPNRHLGFGWGAHM 376
Query: 477 CIG 479
C+G
Sbjct: 377 CLG 379
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 56.1 bits (136), Expect = 1e-08
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 397 EALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLS 456
E LR R +E+V + +P+ + V++ +RDP+ FP P +D R
Sbjct: 280 EILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVTRDTR 339
Query: 457 ENVAGRNPYAYIPFSAGPRNCIG 479
+++ F G C+G
Sbjct: 340 GHLS---------FGQGIHFCMG 353
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 55.4 bits (134), Expect = 2e-08
Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 34/201 (16%)
Query: 283 RKADLKARRNIEETMEDSAEDVKKRPAFLDL---LIEASER-HNLSDENIREEVDTFMFE 338
+ A E A + ++ P D+ + A +SD +
Sbjct: 231 SQIVAGAVAEFERYFAGLAAERRRNPTD-DVATVIANAVVDGEPMSDRDTAGYYIITASA 289
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEA 398
GHDTTSA+ L L + ++ +V + R+L L ++EA
Sbjct: 290 GHDTTSASSAGAALALARDPDLFARVKAD---------------RNL-----LPGIVEEA 329
Query: 399 LRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSEN 458
+R V R + D L + +++ + DP FP P +DP R + +
Sbjct: 330 IRWTTPVQHFMRTAATDTELCGQKIAAGDWLMLNYVAANHDPAQFPEPRKFDPTRPANRH 389
Query: 459 VAGRNPYAYIPFSAGPRNCIG 479
+A F AG C+G
Sbjct: 390 LA---------FGAGSHQCLG 401
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 54.6 bits (132), Expect = 4e-08
Identities = 35/189 (18%), Positives = 56/189 (29%), Gaps = 38/189 (20%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDTTSAAICWTLL 352
+ DV +L A R + + G T L
Sbjct: 206 VRARAGSEGGDV------YSMLGAAVGRGEVGETEAVGLAGPLQIGGEAVTHNVGQMLYL 259
Query: 353 LLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVP--FIAR 410
LL + +E+ ++ E + E LR +AR
Sbjct: 260 LL-TRRELMARMRER---------------PGA-----RGTALDELLRWISHRTSVGLAR 298
Query: 411 KLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPF 470
EDV + + V + +RDP+VFP P+ D DR + ++A +
Sbjct: 299 IALEDVEVHGTRIAAGEPVYVSYLAANRDPDVFPDPDRIDLDRDPNPHLA---------Y 349
Query: 471 SAGPRNCIG 479
G C G
Sbjct: 350 GNGHHFCTG 358
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 54.2 bits (131), Expect = 5e-08
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 397 EALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLS 456
E LR I R ED+ + + V++ + ++RD + + P+++D R
Sbjct: 282 ELLRFTSVSDHIVRMAKEDIEVGGATIKAGDAVLVSITLMNRDAKAYENPDIFDARRNAR 341
Query: 457 ENVAGRNPYAYIPFSAGPRNCIG 479
+V F G C+G
Sbjct: 342 HHVG---------FGHGIHQCLG 355
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 53.4 bits (129), Expect = 8e-08
Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 34/181 (18%)
Query: 305 KKRPA--FLDLLIEASERHN---LSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQE 359
+ L + +SDE TF G +T + + L+ L +
Sbjct: 195 NPNITTGLMGELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRPQ 254
Query: 360 IQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARKLSEDVPL 418
++N ++E+ L + A ++E LR+ S + R + D+ +
Sbjct: 255 LRNLLHEK---------------PEL-----IPAGVEELLRINLSFADGLPRLATADIQV 294
Query: 419 PDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCI 478
D ++ + V++++ + DPE FP P + DR NP +++ F G C
Sbjct: 295 GDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDR--------PNPTSHLAFGRGQHFCP 346
Query: 479 G 479
G
Sbjct: 347 G 347
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 53.5 bits (129), Expect = 9e-08
Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 27/175 (15%)
Query: 283 RKADLKARRNIEETMEDSAEDVKKRPAFLDL---LIEAS-ERHNLSDENIREEVDTFMFE 338
+ + AE+ K PA D+ LI+A + LSD+ V
Sbjct: 210 HIDPKASSAELIGYAMKMAEEKAKNPAD-DIVTQLIQADIDGEKLSDDEFGFFVVMLAVA 268
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEA 398
G++TT +I ++ + + + E E
Sbjct: 269 GNETTRNSITQGMMAFAEHPDQWELYKKVRP----------------------ETAADEI 306
Query: 399 LRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDR 453
+R V R D L + + V++ + + D EVF P ++ R
Sbjct: 307 VRWATPVTAFQRTALRDYELSGVQIKKGQRVVMFYRSANFDEEVFQDPFTFNILR 361
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 53.4 bits (129), Expect = 1e-07
Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 38/190 (20%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERHN--LSDENIREEVDTFMFEGHDTTSAAICWT 350
I+ ED+ L L+ S+ L+ E + + GH+TT I
Sbjct: 222 IDSKRGQDGEDL------LSALVRTSDEDGSRLTSEELLGMAHILLVAGHETTVNLIANG 275
Query: 351 LLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IA 409
+ L S+ + + + +L L+ ++E LR V
Sbjct: 276 MYALLSHPDQLAALRAD---------------MTL-----LDGAVEEMLRYEGPVESATY 315
Query: 410 RKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIP 469
R E V L V+P V++V+ + HR PE FP P +D R + ++A
Sbjct: 316 RFPVEPVDLDGTVIPAGDTVLVVLADAHRTPERFPDPHRFDIRRDTAGHLA--------- 366
Query: 470 FSAGPRNCIG 479
F G CIG
Sbjct: 367 FGHGIHFCIG 376
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 53.0 bits (128), Expect = 1e-07
Identities = 42/189 (22%), Positives = 63/189 (33%), Gaps = 38/189 (20%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDTTSAAICWTLL 352
I + + EDV LL A R ++ G T+ + L
Sbjct: 203 IGLRSDSAGEDV------TSLLGAAVGRDEITLSEAVGLAVLLQIGGEAVTNNSGQMFHL 256
Query: 353 LLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF--IAR 410
LL S E+ ++ E + I E LR P ++R
Sbjct: 257 LL-SRPELAERLRSE---------------PEI-----RPRAIDELLRWIPHRNAVGLSR 295
Query: 411 KLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPF 470
EDV + + V + +RDPEVFP P+ D +R + +V+ F
Sbjct: 296 IALEDVEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFERSPNPHVS---------F 346
Query: 471 SAGPRNCIG 479
GP C G
Sbjct: 347 GFGPHYCPG 355
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 52.2 bits (126), Expect = 2e-07
Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 34/196 (17%)
Query: 289 ARRNIEETMEDSAEDVKKRPA--FLDLLIEASERH--NLSDENIREEVDTFMFEGHDTTS 344
A + + D E + P L L+ S+ LS E + + GH+TT
Sbjct: 183 AMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTV 242
Query: 345 AAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPS 404
I +L L ++ + + + E+ SL + + ++E LR
Sbjct: 243 NLIGNGVLALLTHPDQRKLLAED---------------PSL-----ISSAVEEFLRFDSP 282
Query: 405 VPF-IARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRN 463
V R +EDV +P V++ + +RD + P P+ D R S V
Sbjct: 283 VSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVF--- 339
Query: 464 PYAYIPFSAGPRNCIG 479
F G C+G
Sbjct: 340 ------FGHGIHFCLG 349
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 52.3 bits (126), Expect = 2e-07
Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 37/188 (19%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDTTSAAICWTLL 352
I ++ E + + ++ + +DE +R M G D S I +L
Sbjct: 198 IARERKEPGEGM------IGAVVAE-YGDDATDEELRGFCVQVMLAGDDNISGMIGLGVL 250
Query: 353 LLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARK 411
+ + E + + + + E +R R
Sbjct: 251 AMLRHPEQIDAFRGD---------------EQS-----AQRAVDELIRYLTVPYSPTPRI 290
Query: 412 LSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFS 471
ED+ L + + VI + +RDP + P + D R +VA F
Sbjct: 291 AREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTREPIPHVA---------FG 341
Query: 472 AGPRNCIG 479
G +C+G
Sbjct: 342 HGVHHCLG 349
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 51.9 bits (125), Expect = 3e-07
Identities = 34/190 (17%), Positives = 75/190 (39%), Gaps = 38/190 (20%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERH-NLSDENIREEVDTFMFEGHDTTSAAICWTL 351
I+ ++ +D+ + L++A ++ +LS++ + + + G+++T+ I +
Sbjct: 214 IDRRRKEPTDDL------VSALVQARDQQDSLSEQELLDLAIGLLVAGYESTTTQIADFV 267
Query: 352 LLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPFIA-- 409
LL + E++ ++ + L + + ++E R P A
Sbjct: 268 YLLMTRPELRRQLLDR---------------PEL-----IPSAVEELTRWVPLGVGTAFP 307
Query: 410 RKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIP 469
R EDV L + V+ +RD FP + D DR ++++
Sbjct: 308 RYAVEDVTLRGVTIRAGEPVLASTGAANRDQAQFPDADRIDVDRTPNQHLG--------- 358
Query: 470 FSAGPRNCIG 479
F G +C+G
Sbjct: 359 FGHGVHHCLG 368
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 51.5 bits (124), Expect = 4e-07
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 37/199 (18%)
Query: 289 ARRNIEETMEDSAEDVKKRPA--FLDLLIEASERHN----LSDENIREEVDTFMFEGHDT 342
+ E ++ + P LLI A + LS E +R+ + + G++T
Sbjct: 187 NTARLYEVLDQLIAAKRATPGDDMTSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYET 246
Query: 343 TSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLY 402
T I + L + + V + ++E LR
Sbjct: 247 TVNVIDQAVHTLLTRPDQLALVRKG---------------EVT-----WADVVEETLRHE 286
Query: 403 PSVPF-IARKLSEDVPLPDYVL-PRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVA 460
P+V R D+ LPD R ++ +R P+ + +D R + E++A
Sbjct: 287 PAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDATRTVKEHLA 346
Query: 461 GRNPYAYIPFSAGPRNCIG 479
F G C+G
Sbjct: 347 ---------FGHGVHFCLG 356
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 50.7 bits (122), Expect = 6e-07
Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 35/189 (18%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERH-NLSDENIREEVDTFMFEGHDTTSAAICWTL 351
+E+ + + +D+ + L + N+ + + + G+ T I +
Sbjct: 200 VEQRLVEPKDDI------ISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGV 253
Query: 352 LLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IAR 410
L + + ++ SL ++E R + + I R
Sbjct: 254 ATLAQHPDQLAQLKAN---------------PSL-----APQFVEELCRYHTASALAIKR 293
Query: 411 KLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPF 470
EDV + D ++ + +I + +RD EVF P+ ++ +R P + F
Sbjct: 294 TAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNR-------KWPPQDPLGF 346
Query: 471 SAGPRNCIG 479
G CI
Sbjct: 347 GFGDHRCIA 355
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 50.7 bits (122), Expect = 6e-07
Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 37/188 (19%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDTTSAAICWTLL 352
+ D + + L +++ + ++DE ++ + G +T + I + +L
Sbjct: 207 LARQRADPDDGL------LGMIVRDHGDN-VTDEELKGLCTALILGGVETVAGMIGFGVL 259
Query: 353 LLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARK 411
L N ++E E + E +R V R
Sbjct: 260 ALLDNPGQIELLFES---------------PEK-----AERVVNELVRYLSPVQAPNPRL 299
Query: 412 LSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFS 471
+DV + ++ V+ + +RD + P P++ D +R +V F
Sbjct: 300 AIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDANRAAVSDVG---------FG 350
Query: 472 AGPRNCIG 479
G C+G
Sbjct: 351 HGIHYCVG 358
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 50.7 bits (122), Expect = 6e-07
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 397 EALRLYPSVPF-IARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFL 455
E LR R + D+ + ++ VI+V +RD V+ P+ D R
Sbjct: 283 ELLRYLAIADIAGGRVATADIEVEGQLIRAGEGVIVVNSIANRDGTVYEDPDALDIHRSA 342
Query: 456 SENVAGRNPYAYIPFSAGPRNCIG 479
++A F G C+G
Sbjct: 343 RHHLA---------FGFGVHQCLG 357
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 8e-07
Identities = 69/512 (13%), Positives = 150/512 (29%), Gaps = 188/512 (36%)
Query: 16 RVEAVDRREDLTLLGELILRPQDGIRPILNNSRTIHKSSDYCYIEPWLGNGLLTSAGHIW 75
V R L L+ + ++ ++ + +Y +L +
Sbjct: 60 AVSGTLR-----LFWTLLSKQEEMVQKFVEEV----LRINY----KFLMSP--------I 98
Query: 76 HQRRKILTPAFHFRILEDFVEVFQEQSEVLVRRLGEVGVGESINVF---PYVTLCTLDIK 132
++ P+ R+ + + ++V + NV PY+ L ++
Sbjct: 99 KTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKY----------NVSRLQPYLKLRQALLE 146
Query: 133 LQWEE-----------KSMLRATVTQNMSKLS--------MSIQSVIREFRTIALLLTLG 173
L+ + K+ + V + +++++ + +L L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 174 YFVV----------RRIK------QSRLVKLINRIPGPTSLPVLGNSIECNVDNEETAMG 217
Y + IK Q+ L +L+ P L VL
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---------------- 250
Query: 218 RKINAQDD-SNSEYVKAVYEIGS--IIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTLHS 274
+ N++ A + + ++ R ++ DF LS+ H + +
Sbjct: 251 ------LNVQNAKAWNA-FNLSCKILLTTRFKQV---TDF---LSAATTTHISLDHHSMT 297
Query: 275 FSY--------KVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDE 326
+ K ++ R DL E + P + ++ E
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLP------------REVLTTNP----RRL------SIIAE 335
Query: 327 NIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLN 386
+IR+ + T+ W + + I+ +S L +P R +
Sbjct: 336 SIRDGLATWDN-----------W--------KHVNCDKLTTIIESSLNVL-EPAEYRKM- 374
Query: 387 SMKYLEACIKEALRLYPSVPFIARKLSEDVPLPDYVLPR------DTEVIIVVYNLH--- 437
+ + L ++P +P +L ++V++VV LH
Sbjct: 375 ---F------DRLSVFP----------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 438 ---RDPEVFPRPELYDPDRFLSENVAGRNPYA 466
+ P+ + P +L V N YA
Sbjct: 416 LVEKQPK---ESTISIPSIYLELKVKLENEYA 444
Score = 50.2 bits (119), Expect = 1e-06
Identities = 72/467 (15%), Positives = 132/467 (28%), Gaps = 150/467 (32%)
Query: 7 ILANILRRFRVEAVDRREDLTLLGELILRPQDGIRPILNNSRTIHKSSDYCYIEPWLGNG 66
+L +L + + T + + I I R + KS Y N
Sbjct: 201 MLQKLLYQID-------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NC 246
Query: 67 LLTSAGHIWHQRRKILTPAFHF--RIL--------EDFVEVFQEQSEVLVRRLGEVGVGE 116
LL ++ + K AF+ +IL DF+ L + E
Sbjct: 247 LLVLL-NVQN--AKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 117 SINVFPYVTLCT-------------LDIKLQWEEKSMLRATVTQ----NMSKLSMSIQSV 159
++ C + + E AT N KL+ I+S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 160 IR-----EFRTIALLLTLGYFVVRRIKQSRLVKLINRIPGPTSLPVL-GNSIECNVDNEE 213
+ E+R + L F IP L ++ + I+ +V
Sbjct: 363 LNVLEPAEYR--KMFDRLSVFPPS-------AH----IPTIL-LSLIWFDVIKSDVMVVV 408
Query: 214 TAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAK----IH-LQPDFLFRLSSLYKNHQRC 268
+ + S+++K+ + I + + +L + Y H+
Sbjct: 409 NKLHKY-------------------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 269 LNTLHSFSYKVINERKAD------------------LKARRNIEETMEDSAEDVKKRPAF 310
++ Y + +D LK + E R F
Sbjct: 450 VD-----HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-------FRMVF 497
Query: 311 LDL-LIEASERHNLSDENIREEVDTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEIL 369
LD +E IR HD+T+ ++L N Q K Y+
Sbjct: 498 LDFRFLEQK---------IR----------HDSTAWNASGSIL----NTLQQLKFYKP-- 532
Query: 370 VTSFKALHKPFTTRSLNS-MKYLEACIKEALRLYPSVPFIARKLSED 415
+ + P R +N+ + +L +E L + L +
Sbjct: 533 ---YICDNDPKYERLVNAILDFLPKI-EENLICSKYTDLLRIALMAE 575
Score = 46.4 bits (109), Expect = 2e-05
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 30/158 (18%)
Query: 294 EETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDTTSA-AICWTLL 352
++ + + D ++ + LS E E+D + + + WTLL
Sbjct: 19 KDILSVFEDAFVDNFDCKD--VQDMPKSILSKE----EIDHIIMSKDAVSGTLRLFWTLL 72
Query: 353 LLGSNQEIQNKVYEEILVTSFKALHKPFTTR----SLNSMKYLEACIKEALRLYPSVPFI 408
+E+ K EE+L ++K L P T S+ + Y+E + RLY
Sbjct: 73 S--KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE----QRDRLYNDNQ-- 124
Query: 409 ARKLSEDVPLPDYVLPRD---TEVIIVVYNLHRDPEVF 443
Y + R ++ + L V
Sbjct: 125 --------VFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 50.3 bits (121), Expect = 8e-07
Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 37/189 (19%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERH-NLSDENIREEVDTFMFEGHDTTSAAICWTL 351
++E + +D+ + LI + + D + T + HDTT+ I
Sbjct: 197 VQERRANPGDDL------ISALITTEDPDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGT 250
Query: 352 LLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IAR 410
LL + + + E+ SL + ++E LR F R
Sbjct: 251 ALLLDSPDQLALLRED---------------PSL-----VGNAVEELLRYLTIGQFGGER 290
Query: 411 KLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPF 470
+ DV L + + +V+ V DP PE +D R + ++A F
Sbjct: 291 VATRDVELGGVRIAKGEQVVAHVLAADFDPAFVEEPERFDITRRPAPHLA---------F 341
Query: 471 SAGPRNCIG 479
G CIG
Sbjct: 342 GFGAHQCIG 350
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 50.3 bits (121), Expect = 8e-07
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 37/189 (19%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERH-NLSDENIREEVDTFMFEGHDTTSAAICWTL 351
+ E E+ +D+ + L+ N++ E + + + G +TT++ I +
Sbjct: 209 VAERREEPRDDL------ISKLVTDHLVPGNVTTEQLLSTLGITINAGRETTTSMIALST 262
Query: 352 LLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IAR 410
LLL E+ ++ ++ L + A + E LR+ R
Sbjct: 263 LLLLDRPELPAELRKD---------------PDL-----MPAAVDELLRVLSVADSIPLR 302
Query: 411 KLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPF 470
+ED+ L +P D VI ++ + DPE F PE D R + +VA F
Sbjct: 303 VAAEDIELSGRTVPADDGVIALLAGANHDPEQFDDPERVDFHRTDNHHVA---------F 353
Query: 471 SAGPRNCIG 479
G C+G
Sbjct: 354 GYGVHQCVG 362
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 50.3 bits (121), Expect = 8e-07
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 397 EALRLYPSVPF-IARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFL 455
E LR + +R +EDV + + VI+ + + + DP VF P + D +R
Sbjct: 284 ELLRYFTIADGVTSRLATEDVEIGGVSIKAGEGVIVSMLSANWDPAVFKDPAVLDVERGA 343
Query: 456 SENVAGRNPYAYIPFSAGPRNCIG 479
++A F GP C+G
Sbjct: 344 RHHLA---------FGFGPHQCLG 358
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 49.9 bits (120), Expect = 9e-07
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 397 EALRLYPSV--PFIARKLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRF 454
E LR + R SED+ + V+ + + D F PE +D R
Sbjct: 280 EVLRTARAGGSVLPPRYASEDMEFGGVTIRAGDLVLFDLGLPNFDERAFTGPEEFDAART 339
Query: 455 LSENVAGRNPYAYIPFSAGPRNCIG 479
+ ++ F G +CIG
Sbjct: 340 PNPHLT---------FGHGIWHCIG 355
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 75/437 (17%), Positives = 130/437 (29%), Gaps = 167/437 (38%)
Query: 2 LEEKVILANILRRFRVEAVDRREDL-----TLLGELILRPQD-------GIRPI--LNNS 47
EE L ++ + + V DL L ELI D G+ + L N
Sbjct: 170 FEE---LRDLYQTYHVLV----GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 48 RTIHKSSDY-CYIE---PWLGNGLLTSAGHIWHQRRKI-LTPAFHFRIL-------EDFV 95
DY I P +G + H + + TP L + V
Sbjct: 223 SNTP-DKDYLLSIPISCPLIG---VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 96 -----------EVFQEQSEVLVRRLGEVGVGESINVFPYVTLC--TLDIKLQWEEKS--- 139
E F + L +GV +P +L L+ L+ E
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGV-RCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 140 MLRATVTQNMSKLSMSIQSVIREFRT-------IALLLTLGY--FVVRRIKQSRLVKLIN 190
ML +++ N+++ +Q + + + + + L G VV S
Sbjct: 338 ML--SIS-NLTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-----S------- 380
Query: 191 RIPG-PTSLPVLGNSIECNVDNEETAMGRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIH 249
G P SL L ++ RK A + + + +R+ K
Sbjct: 381 ---GPPQSLYGLNLTL------------RKAKAPSGLDQS--RIPFS------ERKLKFS 417
Query: 250 LQPDFLFRLSSLYKNHQRCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKKRPA 309
+ FL ++S + HS + +++ + K
Sbjct: 418 NR--FL-PVASPF----------HS-HL-------------------LVPASDLINKDLV 444
Query: 310 FLDLLIEASERHNLSDENIREEV-DTFMFEGHDTTSAAICWTLLLLGSNQEIQNKVYEEI 368
++ A + I+ V DT F+G D L + I ++ + I
Sbjct: 445 KNNVSFNAKD--------IQIPVYDT--FDGSD-----------LRVLSGSISERIVDCI 483
Query: 369 LV--------TSFKALH 377
+ T FKA H
Sbjct: 484 IRLPVKWETTTQFKATH 500
Score = 44.3 bits (104), Expect = 1e-04
Identities = 54/320 (16%), Positives = 86/320 (26%), Gaps = 133/320 (41%)
Query: 216 MGRKINAQDD--SNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNHQRCLNTLH 273
MG D S+ + V+ +A H + + F + + N+ L T+H
Sbjct: 1631 MGM------DLYKTSKAAQDVWN--------RADNHFKDTYGFSILDIVINNPVNL-TIH 1675
Query: 274 SFSY---KVINERKADLKARRNIEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIRE 330
F K I E + + I ET+ D +K F ++ +E+
Sbjct: 1676 -FGGEKGKRIRENYSAM-----IFETIVD--GKLKTEKIFKEI-----------NEHSTS 1716
Query: 331 EVDTFMFEGHD--------------TTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKAL 376
+ F A L S I F A
Sbjct: 1717 ----YTFRSEKGLLSATQFTQPALTLMEKAA---FEDLKSKGLIPADAT-------F-AG 1761
Query: 377 HKPFTTRSLNSMKYLE----ACIKEALRLYPSVPFIARKLSEDVPLPDYVLPRDTEVIIV 432
H SL E A + + + E ++ V
Sbjct: 1762 H------SLG-----EYAALASLADVM------SI------ES-------------LVEV 1785
Query: 433 VYNLHR---DPEVFPRPELYDPDRFLSENVAGRNPYAYIPFSAGPRNCIGESEILEREQR 489
V+ +R PR EL GR+ Y I + G E L+
Sbjct: 1786 VF--YRGMTMQVAVPRDEL------------GRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 490 KVATYS------ANNTFNVS 503
+V + N +NV
Sbjct: 1832 RVGKRTGWLVEIVN--YNVE 1849
Score = 42.0 bits (98), Expect = 5e-04
Identities = 75/420 (17%), Positives = 127/420 (30%), Gaps = 121/420 (28%)
Query: 162 EFRTIALLLT--LGYFVVRRIKQSRLVKLINRIPGPTSLPVLGNSIECNV--DNEETAMG 217
E T A L+ LG +V ++ S+ V +++ L + E N+ A+
Sbjct: 53 EPTTPAELVGKFLG-YVSSLVEPSK-VGQFDQV-----LNLCLTEFENCYLEGNDIHALA 105
Query: 218 RKINAQDDS----NSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSS-----LYK----- 263
K+ ++D+ E +K + ++ K LFR L
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQ 163
Query: 264 -NHQRCLNTLHSFSYKVINERKADL--KARRNIEETMEDSAEDVKKRPAFLDLLIEASER 320
N L Y+ + DL + + E + + + K L++L
Sbjct: 164 GNTDDYFEELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL------ 216
Query: 321 HNLSDENIREEVDTFMFEGHDTTSAAICWTLL-------------LLGSN-QEIQNK--- 363
L + + + D S I L+ LLG E+++
Sbjct: 217 EWLENPSNTPDKDYL-------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 364 ---VYEEILVTSFKALHK---PFTTRSLNSMKYLEACIKEALRLYP--SVPFIARKLS-- 413
+ ++ A F ++ L YP S+P + S
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 414 --EDVPLP-------------DYV------LPRDTEVIIVVYNLHRDPEVF----PRPEL 448
E VP P DYV LP +V I + N ++ P L
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN---LVVSGPPQSL 386
Query: 449 YDPDRFLSENVAGRNPY-AYIPFSAGPRNCIGESEILEREQRKVATYSANNTF-NVSV-F 505
Y + L + A + IPFS +RK+ N F V+ F
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFS----------------ERKLKFS---NRFLPVASPF 427
Score = 40.4 bits (94), Expect = 0.002
Identities = 42/239 (17%), Positives = 65/239 (27%), Gaps = 99/239 (41%)
Query: 301 AEDVKKRPAFLDLLIEASERHNLSDE--NIREEVDTFM---------------------- 336
A ++++ F +L E +E DE E V F+
Sbjct: 30 ASQLQEQ--FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 337 ---FE-----GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALH---KPFTTRS- 384
FE G+D + A LL N K E++ A +PF +S
Sbjct: 88 LTEFENCYLEGNDIHALA----AKLLQENDTTLVKTK-ELIKNYITARIMAKRPFDKKSN 142
Query: 385 ---LNSMK------YL--------EACIKEALR-LY----PSV-PFIAR------KLSED 415
++ + +E LR LY V I +L
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 416 VPLPDYVLPRDTEVIIVVYNLH---RDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFS 471
+ V + N+ +P P D D +L IP S
Sbjct: 202 TLDAEKVFTQ-------GLNILEWLENPSNTP-----DKD-YL----------LSIPIS 237
Score = 36.6 bits (84), Expect = 0.021
Identities = 43/293 (14%), Positives = 96/293 (32%), Gaps = 96/293 (32%)
Query: 70 SAGHIWHQRRKILTPAFHFRILEDFVE--------VF--------QEQSEVLVRRLGEVG 113
+A +W++ + F IL D V F +E ++ G
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSIL-DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 114 VGESINVFPYVTLCTLDIKLQWE-EKSMLRAT-VTQ-NMSKLSMSIQSVIREFRTI---- 166
++ +F + + + EK +L AT TQ ++ + + ++ + +
Sbjct: 1700 KLKTEKIFKEINEHS--TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS-KGLIPAD 1756
Query: 167 ------------AL-----LLTLGYFVVRRIKQSRLVKLINRIPGPTSLPVLGNSIECNV 209
AL ++++ V +V R G +++ V
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLV-------EVVFY--R----------GMTMQVAV 1797
Query: 210 DNEETAMGRK----INAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQPDFLFRLSSLYKNH 265
+E IN + S +A+ + + KR + ++ N+
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-VEI----------VNY 1846
Query: 266 -----Q-------RCLNTLHSFSYKVINERKADLKARRNIEETMEDSAEDVKK 306
Q R L+T+ + I +K D+ +++++ S E+V+
Sbjct: 1847 NVENQQYVAAGDLRALDTV-TNVLNFIKLQKIDIIE---LQKSL--SLEEVEG 1893
Score = 31.2 bits (70), Expect = 1.0
Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 52/168 (30%)
Query: 74 IWHQRRK---------ILTPAFHFRILEDFVEVFQEQSEVLVRRLGEVGV---GESINVF 121
I RK + +P FH +L ++ + L + V + I +
Sbjct: 407 IPFSERKLKFSNRFLPVASP-FHSHLLVPASDLINK-------DLVKNNVSFNAKDIQI- 457
Query: 122 P-YVTLCTLDIKLQWEEKSMLRATVTQNMSK-------LSMSIQSVIREF--RTIALLLT 171
P Y T D L+ S+ V + ++ +F + L
Sbjct: 458 PVYDTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGV 514
Query: 172 LGYFVVRRIKQSRLVKLINRIPGPTSLPVLGNSIECNVDNEETAMGRK 219
L R K V++I + +++ N D++ G K
Sbjct: 515 L----THRNKDGTGVRVI-----------VAGTLDINPDDD---YGFK 544
Score = 30.0 bits (67), Expect = 2.6
Identities = 42/248 (16%), Positives = 64/248 (25%), Gaps = 90/248 (36%)
Query: 201 LGNSIECNVDNEETAM--------GRKINAQDDSNSEYVKAVYEIGSIIQKRQAKIHLQP 252
G SI V N + G++I Y ++E + + KI
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIREN------YSAMIFETIVDGKLKTEKIF--K 1708
Query: 253 DFLFRLSSLYKNHQRCL-----NT---LHSFSYKVINERKADLKARRNIEE--------- 295
+ +S ++ L T L DLK++ I
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF----EDLKSKGLIPADATFAGHSL 1764
Query: 296 -------------TMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDT 342
++E E V R + A R DE R M
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQ---VAVPR----DELGRSNYG--M------ 1809
Query: 343 TSAAICWTLLLLGSNQEIQNKVYEEI-------------------LVTS--FKALHKPFT 381
AI + +QE V E + V + +AL
Sbjct: 1810 --IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT--V 1865
Query: 382 TRSLNSMK 389
T LN +K
Sbjct: 1866 TNVLNFIK 1873
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 47.6 bits (114), Expect = 5e-06
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 37/190 (19%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASER-HNLSDENIREEVDTFMFEGHDTTSAAICWTL 351
+ +D+ LI+ASE +L+D I + + GH+TT + I +
Sbjct: 202 VAAKRAAPGDDL------TSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAV 255
Query: 352 LLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IAR 410
+ L ++ E + V + A ++E LR + R
Sbjct: 256 VNLSTHPEQRALVLSG---------------EAE-----WSAVVEETLRFSTPTSHVLIR 295
Query: 411 KLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVF-PRPELYDPDRFLSENVAGRNPYAYIP 469
+EDVP+ D V+P +I+ L RD P + +D R + +I
Sbjct: 296 FAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTR--------TSGNRHIS 347
Query: 470 FSAGPRNCIG 479
F GP C G
Sbjct: 348 FGHGPHVCPG 357
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 6e-04
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 386 NSMKYLEACIKEALRLY-P-SVPFIARKLS 413
++K L+A +L+LY S P +A K +
Sbjct: 20 QALKKLQA----SLKLYADDSAPALAIKAT 45
Score = 34.9 bits (79), Expect = 0.025
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 181 KQSRLVKLINRIP--GPTSLPVLG-N-SIE 206
KQ+ L KL + S P L ++E
Sbjct: 19 KQA-LKKLQASLKLYADDSAPALAIKATME 47
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 36.4 bits (85), Expect = 0.020
Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 42/188 (22%)
Query: 293 IEETMEDSAEDVKKRPAFLDLLIEASERHNLSDENIREEVDTFMFEGHDTTSAAICWTLL 352
D + + + +++ +SDE + + + + +A + +L
Sbjct: 188 TSGKRRDPGDGM------IGVIVRE-HGAEISDEELAGLAEGNLIMAAEQMAAQLAVAVL 240
Query: 353 LLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEACIKEALRLYPSVPF-IARK 411
LL ++ + + E+ L +++ +E LR V R
Sbjct: 241 LLVTHPDQMALLREK---------------PEL-----IDSATEEVLRHASIVEAPAPRV 280
Query: 412 LSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYIPFS 471
DV + + + + +R P + +D R + ++A F
Sbjct: 281 ALADVRMAGRDIHAGDVLTCSMLATNRAP-----GDRFDITREKATHMA---------FG 326
Query: 472 AGPRNCIG 479
G +CIG
Sbjct: 327 HGIHHCIG 334
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 32.4 bits (74), Expect = 0.41
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 271 TLHSFSYKVIN--ERKADLKARRNIEETMEDSAEDVKKRPAFLD--LLIEASERHNLSDE 326
TLH+ Y N +A++ E + LD L I +E N S +
Sbjct: 542 TLHALHYHQTNVQSVQANIAQT-----------EFNAEFEPLLDDLLTIPVAENANWSAQ 590
Query: 327 NIREEVD 333
I++E+D
Sbjct: 591 EIQQELD 597
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A,
isocitrate lyase, persistence, GLCB, structural
genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Length = 741
Score = 31.3 bits (71), Expect = 0.90
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 20/67 (29%)
Query: 271 TLHSFSYKVIN--ERKADLKARRNIEETMEDSAEDVKKRPAFLD--LLIEASERHNLSDE 326
TLH+ Y ++ + L +R A ++ L I ++ + +
Sbjct: 549 TLHALHYHQVDVAAVQQGLAGKR----------------RATIEQLLTIPLAKELAWAPD 592
Query: 327 NIREEVD 333
IREEVD
Sbjct: 593 EIREEVD 599
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 30.4 bits (68), Expect = 1.9
Identities = 12/118 (10%), Positives = 22/118 (18%), Gaps = 7/118 (5%)
Query: 339 GHDTTSAAICWTLLLLGSNQEIQNKVYEEILVTSFKALHKPFTTRSLNSMKYLEAC--IK 396
G L + + K + K
Sbjct: 196 GKFINH---LIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK 252
Query: 397 EALRLYPSVPFIARKLSEDVPLPD--YVLPRDTEVIIVVYNLHRDPEVFPRPELYDPD 452
E L + +E P + E++ + E P+ D
Sbjct: 253 ETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIP 310
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure
initiative, structural genomics, midwest for structural
genomics (MCSG); 1.90A {Shigella flexneri 2a str}
Length = 382
Score = 28.5 bits (64), Expect = 5.2
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 16/79 (20%)
Query: 267 RCLNTLHSFS--------YKVINERKADLKARRNIEETMEDSAE--------DVKKRPAF 310
LNT H+ + ++ I + D K R ++ ME+S D K A+
Sbjct: 214 FTLNTGHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAMEESGAVLIKRYGFDADKHAAY 273
Query: 311 LDLLIEASERHNLSDENIR 329
+ ++ E L D+ R
Sbjct: 274 IQKILGRFENPYLKDDVER 292
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1,
structural genomics, PSI-2, protein structure
initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP:
d.326.1.1
Length = 126
Score = 27.2 bits (60), Expect = 7.4
Identities = 3/41 (7%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 75 WHQRRKILTPAFHFRILEDFVEVFQEQSEVLV-RRLGEVGV 114
W ++++ + +I + + ++ + + + + G+
Sbjct: 63 WDGKKRVQHIILYLQIQNGKIWIEEDSTNLAIVDEMLVAGI 103
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 28.3 bits (62), Expect = 7.7
Identities = 5/44 (11%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 425 RDTEVIIVVYNLHRDPEVFPRPELYDPDRFLSENVAGRNPYAYI 468
++ + I++ N+ ++P+ +++ ++ E P +
Sbjct: 590 KNGQKIVIAANVGKEPKEITGGRVWN-GKWSDEEKVVLKPLEFA 632
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2,
structure initiative, joint center for structural
genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Length = 114
Score = 27.0 bits (60), Expect = 7.8
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 75 WHQRRKILTPAFHFRILEDFVEVFQEQSEVLV-RRLGEVGV 114
W ++I H RI + + + ++ +E + L +GV
Sbjct: 51 WQGSKRIKYTYVHIRIKNEKIYIEEDYTEEGIATELMRLGV 91
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 27.7 bits (62), Expect = 8.8
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 411 KLSEDVPLPDYVLPRDTEVIIVVYNLHRDPEVFPRPELYDPD 452
K + + + I V Y PE+F PE +PD
Sbjct: 251 KWIKQYTGINAISK-KEFSIDVGYERFLGPEIFFHPEFANPD 291
>3d7q_A XISI protein-like; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; 2.30A
{Nostoc punctiforme pcc 73102}
Length = 112
Score = 26.6 bits (59), Expect = 9.2
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 75 WHQRRKILTPAFHFRILEDFVEVFQEQSEVLV-RRLGEVGV 114
W+ + +I P H I + + + Q +E + L E+G+
Sbjct: 49 WNNQHRIYGPIMHLDIKNNKIWIQQNTTEADIALELMEMGI 89
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint
center for STR genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis}
SCOP: d.326.1.1
Length = 112
Score = 26.6 bits (59), Expect = 9.7
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 75 WHQRRKILTPAFHFRILEDFVEVFQEQSEVLV-RRLGEVGV 114
W +I HF I + + + Q ++ L +GV
Sbjct: 49 WQGLNRIYRCVIHFDIKDGKIWLQQNLTDRNPAEELVMMGV 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,884,243
Number of extensions: 479069
Number of successful extensions: 1278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 170
Length of query: 517
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 419
Effective length of database: 3,965,535
Effective search space: 1661559165
Effective search space used: 1661559165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)